View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_54 (Length: 335)
Name: NF11379_low_54
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_54 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 18824705 - 18824395
Alignment:
| Q |
18 |
tcttttacctcatgttcttgaaccaatgatatacaaggtataattttggtcctccttttctaatatctagtcttttagatcccggtaggatcttatatcc |
117 |
Q |
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| T |
18824705 |
tcttttacctcatgttcttgaatcaatgatatacaagatataattttggtcctccttttctaatatctagtcttttagatcctgctaggatcttatatcc |
18824606 |
T |
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| Q |
118 |
tttattaaataagctatggaaataagttttccatctatcctttatattatatcaacttccagaacaaattttttgccttcattgtctcaaatgtattcca |
217 |
Q |
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| T |
18824605 |
tttattaaataagctatggaaataaattttccatctatcctttatattatatcaacttccagaacaaattttttgccttcattgtctcaaatgtattcca |
18824506 |
T |
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| Q |
218 |
tcttattcacacttttcttcaaccatcatgattcaattttctctttgattttaaagtattccattttatgttgcatacttttgtccaaccatcaagattc |
317 |
Q |
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| T |
18824505 |
tcttattcacacttttcttcaaccatcatgattcaa-tttctctttgattttaaagtattccattttattttgcatacttttgttcaaccatcaagattc |
18824407 |
T |
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| Q |
318 |
gattttctcttt |
329 |
Q |
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| T |
18824406 |
gattttctcttt |
18824395 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 27451719 - 27451783
Alignment:
| Q |
101 |
ggtaggatcttatatcctttattaaataagctatggaaataagttttccatctatcctttatatt |
165 |
Q |
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| T |
27451719 |
ggtaagatctcatatccttcattaaataagttatggaaatacattttccatctatccttaatatt |
27451783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 74889 - 74954
Alignment:
| Q |
99 |
ccggtaggatcttatatcctttattaaataagctatggaaataagttttccatctatcctttatat |
164 |
Q |
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| T |
74889 |
ccggtaagatctcatatcctttattaaataagttatggaaacacttctttcatatatcctttatat |
74954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 26443823 - 26443783
Alignment:
| Q |
101 |
ggtaggatcttatatcctttattaaataagctatggaaata |
141 |
Q |
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| T |
26443823 |
ggtaagatctcatatcctttattaaataaggtatggaaata |
26443783 |
T |
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