View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_56 (Length: 320)
Name: NF11379_low_56
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 43119236 - 43119527
Alignment:
| Q |
18 |
agtgatgccacatcacttgtcgtgctggtcgtgcatacgtatttgtcgtgtgatttagcagtgctcttaaatttattattcttttcatttatagcatgct |
117 |
Q |
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| T |
43119236 |
agtgacgccacatcacttgtcgtgctggtggtgcgtacgtatt-gtcgtgtgatttagcagtgctcttaaatttattattcttttcatttatagcatgct |
43119334 |
T |
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| Q |
118 |
caatcatcacttcttcaaacaatgtaagacttttaactcacatttgctaaacgacaataatctccggggatcatacacattggaccaaaaccttaagtta |
217 |
Q |
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| T |
43119335 |
caatcatcacttcttcaaataatgtaagacttttaactcacatttgctaaacgacaataatcttcggggatcatacacattggaccaaatccttaagtta |
43119434 |
T |
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| Q |
218 |
ttgaatttatgagtcttttcattcataaagtattcaacatccaattttctaagcaatatgatctttaaatgaaaaaatgtttattcttctcac |
310 |
Q |
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| T |
43119435 |
ttgaatttatgagtcttttcatttataaagtgttcaacatccaattttctaagcaatatgatctttaaatgaaaaaatgtttattcttatcac |
43119527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 3509480 - 3509547
Alignment:
| Q |
18 |
agtgatgccacatcacttgtcgtgctggtcgtgcatacgtatttgtcgtgtgatttagcagtgctctt |
85 |
Q |
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| T |
3509480 |
agtgatgccacatcacctatcgtgcttgtcgtgcgtatggatttgtcgtgtgatttagcaatgctctt |
3509547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 25094047 - 25094114
Alignment:
| Q |
18 |
agtgatgccacatcacttgtcgtgctggtcgtgcatacgtatttgtcgtgtgatttagcagtgctctt |
85 |
Q |
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| T |
25094047 |
agtgatgccacatcacctatcgtgcttgtcgtgcatgtggatttgttgtgtgatttagcaatgctctt |
25094114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 2336721 - 2336649
Alignment:
| Q |
202 |
ccaaaaccttaagttattgaatttatgagtcttttcattcataaagtattcaacatccaattttctaagcaat |
274 |
Q |
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| T |
2336721 |
ccaaaatcttaaggcattgaatttatgggtcctctcacttataaagtgttcaacctccacttttctaagcaat |
2336649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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