View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11379_low_57 (Length: 319)
Name: NF11379_low_57
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_57 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 7 - 312
Target Start/End: Complemental strand, 39675852 - 39675547
Alignment:
| Q |
7 |
cggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaagaagtttgtgacagtgaattctgctgctttt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39675852 |
cggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaagaagtttgtgacagtgaattctgctgctttt |
39675753 |
T |
|
| Q |
107 |
ggttcttctttgttttgctggagggatcagaatatatttggcgttgaacttccatttctctcttgttaagtgaaggatttgaaatccagaaaatgaaaag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39675752 |
ggttcttctttgttttgctggagggatcagaatatatttggcgttgaacttccatttctctcttgttaagtgaaggatttgaaatccagaaaatgaaaag |
39675653 |
T |
|
| Q |
207 |
aaagaaaggagttcagggagattgattggtaatttgtttgaaacttgaaaaagaaagccaagatttagaatgttatttatagacagacaaagaataagag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39675652 |
aaagaaaggagttcagggagattgattggtaattggtttgaaacttgaaaaagaaagccaagatttagaatgttatttatagacagacaaagaataagag |
39675553 |
T |
|
| Q |
307 |
agtgag |
312 |
Q |
| |
|
|||||| |
|
|
| T |
39675552 |
agtgag |
39675547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 10888097 - 10888167
Alignment:
| Q |
9 |
gttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaagaag |
79 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||| ||||||| || ||||||||| || |||||||||| |
|
|
| T |
10888097 |
gttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacagcgtttgttaaatacagtgaagaag |
10888167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 10045840 - 10045775
Alignment:
| Q |
12 |
aagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaaga |
77 |
Q |
| |
|
||||||||| || |||||||||||||| ||||||||||||| | |||||||||||| |||||||| |
|
|
| T |
10045840 |
aagaagaaaatacgcgacggagaagaaaagaccgaagaaaattgcgtttgttaagtagagtgaaga |
10045775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 10866273 - 10866218
Alignment:
| Q |
13 |
agaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagta |
68 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||| | ||||||||||| |
|
|
| T |
10866273 |
agaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagta |
10866218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 10874032 - 10874087
Alignment:
| Q |
13 |
agaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagta |
68 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||| | ||||||||||| |
|
|
| T |
10874032 |
agaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagta |
10874087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 10879103 - 10879158
Alignment:
| Q |
13 |
agaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagta |
68 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||| | ||||||||||| |
|
|
| T |
10879103 |
agaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagta |
10879158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 10884174 - 10884229
Alignment:
| Q |
13 |
agaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagta |
68 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||| | ||||||||||| |
|
|
| T |
10884174 |
agaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagta |
10884229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University