View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_59 (Length: 317)
Name: NF11379_low_59
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_59 |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 7 - 195
Target Start/End: Complemental strand, 12285523 - 12285332
Alignment:
| Q |
7 |
atttccaaattagtcacgtaaatttaatactaaaaatcaaggtcagggtcaacacaatacctac--nnnnnnnnnacaaattagtcacgtaaatttacct |
104 |
Q |
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| T |
12285523 |
atttccaaattagtcacgtaaatttaatactaaaaatcaaggtcagggtcaacacaatacctactttttttttttacaaattagtcacgtaaatttacct |
12285424 |
T |
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| Q |
105 |
tgcaatttcatgacaacaa-nnnnnnnctttcctacaaaaaataaatgcatcatttataaatattaattaaacaattaatttagttccattc |
195 |
Q |
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| T |
12285423 |
tgcaatttcatgacaacaatattttttttttcttacaaaaaataaatgcatcatttataaatattaattaaacaattaatttagttcaattc |
12285332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 219 - 305
Target Start/End: Complemental strand, 12285306 - 12285220
Alignment:
| Q |
219 |
caaataatttagttatttcttccttcttttcctcatattttctcatcaaatcccattacttataccctcttccaacattttcatctc |
305 |
Q |
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| T |
12285306 |
caaataatttagttatttcttccttcttttcctcatattttctcatcaaatcccattacttataccctcttccaacattttcatctc |
12285220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Complemental strand, 12254940 - 12254898
Alignment:
| Q |
263 |
atcaaatcccattacttataccctcttccaacattttcatctc |
305 |
Q |
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| T |
12254940 |
atcaaattccattacttaaaccctcttccagcattttcatctc |
12254898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Complemental strand, 12260483 - 12260441
Alignment:
| Q |
263 |
atcaaatcccattacttataccctcttccaacattttcatctc |
305 |
Q |
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| T |
12260483 |
atcaaattccattacttaaaccctcttccagcattttcatctc |
12260441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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