View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_61 (Length: 299)
Name: NF11379_low_61
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 1325537 - 1325836
Alignment:
| Q |
1 |
ttcagataaatctcttgcaggtaatatgccggatgttaatgattcaattcagcaactcaagaccaagttcctaaacaagggtctcacagaaaaagacctt |
100 |
Q |
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| T |
1325537 |
ttcagataaatctcttgcaggtaatatgccggatgttaatgattcaattcagcaactcaagaccaagttcctaaacaagggtctcacagaaaaagacctt |
1325636 |
T |
|
| Q |
101 |
gttcttctcagtggtacactctctatctctcttttacactataaaacacag-----acatgatacacgtcgatactggtaataattttaaaaaatgaatt |
195 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
1325637 |
gttcttctcagtggtacactctctatctctctcttacactataaaacacagacacaacatgatccacgtcgatactgataataattttaaaaaatgaatt |
1325736 |
T |
|
| Q |
196 |
aaacaaacataatcctatatgtcgatg--------------cgtgtcagacacgtaacacgccttcaattagaaatgtctatttcagtgcttctagacaa |
281 |
Q |
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||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
1325737 |
aaacaaacataatcctatatgtcgatgtcagacacgtaacatgtgtcagacactaaacacgccttcaattagaaatgtctgtttcagtgcttcaagacaa |
1325836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 21768599 - 21768636
Alignment:
| Q |
159 |
acacgtcgatactggtaataattttaaaaaatgaatta |
196 |
Q |
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|||||||||||||||||||||||| | ||||||||||| |
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| T |
21768599 |
acacgtcgatactggtaataatttgagaaaatgaatta |
21768636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 11602946 - 11602914
Alignment:
| Q |
159 |
acacgtcgatactggtaataattttaaaaaatg |
191 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
11602946 |
acacgtcgatactggtaataattttagaaaatg |
11602914 |
T |
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