View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_63 (Length: 288)
Name: NF11379_low_63
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_63 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 35358124 - 35357850
Alignment:
| Q |
1 |
tgtaatgtgactgctaagattatcaaagattgaggaaaaaatgaaataaaatgagttgttatgacttatgagtggtaattgctatgagttgataaaaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35358124 |
tgtaatgtgactgctaagattatcaaagattgaggaaaaaatgaaataaaatgagttgttatgaattatgagtggtaattgctatgagttgataaaaact |
35358025 |
T |
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| Q |
101 |
atacttag-ttcttaccaccaacaacaatnnnnnnnnnnnnnnnnnnnntgaattgtacattcccatgtgcaaaatgaacatgcaagttttagattctac |
199 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35358024 |
atacttagtttcttaccaccaacaacaataaaagaaaagaaaaataaaatgaattgtacattcccatgtgcaaaatgaacatgcaagttttaaattctac |
35357925 |
T |
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| Q |
200 |
attcatgaccaaagatgaggcatagagatgtttaccttatatgacctcccaaaacgaaccaaaactgttgtgccc |
274 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35357924 |
attcatgaccaaagacgaggcatagagatgtttacctcatatgacctcccaaaacgaaccaaaactgttgtgccc |
35357850 |
T |
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