View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11379_low_65 (Length: 285)

Name: NF11379_low_65
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11379_low_65
NF11379_low_65
[»] chr5 (4 HSPs)
chr5 (1-279)||(41886722-41887000)
chr5 (61-120)||(28695710-28695769)
chr5 (61-121)||(28673460-28673520)
chr5 (203-260)||(41900799-41900856)
[»] chr4 (8 HSPs)
chr4 (53-173)||(7308311-7308431)
chr4 (58-148)||(8186543-8186633)
chr4 (69-148)||(7225346-7225425)
chr4 (70-142)||(532608-532680)
chr4 (73-122)||(1518820-1518869)
chr4 (53-121)||(1481563-1481631)
chr4 (212-256)||(1601177-1601221)
chr4 (207-247)||(53761152-53761192)
[»] chr6 (1 HSPs)
chr6 (53-148)||(9411909-9412004)
[»] chr8 (2 HSPs)
chr8 (70-148)||(18314833-18314911)
chr8 (204-258)||(18314967-18315021)
[»] chr3 (1 HSPs)
chr3 (212-258)||(51763737-51763783)


Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 41886722 - 41887000
Alignment:
Q  1 tggaagacctcgacctcagtgacccgatacaatgtgtacgctatgatgaggcagagcctctttcactggcacttttcaaactacgaaaggttaatctctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886722 tggaagacctcgacctcagtgacccgatacaatgtgtacgctatgatgaggcagagcctctttcactggcacttttcaaactacgaaaggttaatctctc 41886821  T
Q  101 tagtcatcactacatcaacgatagattgcttttcgacttgtttaagaaaagagagtttctggaagaggtcatcttgcgtgactgttatcgcataacggag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886822 tagtcatcactacatcaacgatagattgcttttcgacttgtttaagaaaagagagtttctggaagaggtcatcttgcgtgactgttatcgcataacggag 41886921  T
Q  201 gttggtattgtttctgctctccgcgaaagaccaacattgaagtctttatccatttccaatcctcacactagaaatctaa 279  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41886922 gttggtattgtttctgctctccgggaaagaccaacattgaagtctttatccatttccaatccttacactagaaatctaa 41887000  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 28695710 - 28695769
Alignment:
Q  61 tttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacg 120  Q
    ||||| || |||||||||||||  | ||||||||||||||| ||||||||||||||||||    
T  28695710 tttcattgccacttttcaaactctgcaaggttaatctctctcgtcatcactacatcaacg 28695769  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 28673460 - 28673520
Alignment:
Q  61 tttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacga 121  Q
    ||||| || |||||||||||||  | |||||||||||||||  ||||||||||||||||||    
T  28673460 tttcattgccacttttcaaactctgcaaggttaatctctctcatcatcactacatcaacga 28673520  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 41900799 - 41900856
Alignment:
Q  203 tggtattgtttctgctctccgcgaaagaccaacattgaagtctttatccatttccaat 260  Q
    |||| ||| ||||||||||||| | ||||||||||||| |||||||||  ||||||||    
T  41900799 tggtcttgcttctgctctccgccagagaccaacattgaggtctttatcattttccaat 41900856  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 173
Target Start/End: Complemental strand, 7308431 - 7308311
Alignment:
Q  53 agagcctctttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaaaaga 152  Q
    |||| ||||||||| || |||||||||||| || ||||| ||||||||| ||||||  ||||||||| |||| ||||||||| |||||||||||||  |     
T  7308431 agaggctctttcacgggaacttttcaaactccgcaaggtaaatctctctcgtcatcggtacatcaacaataggttgcttttccacttgtttaagaattgt 7308332  T
Q  153 gagtttctggaagaggtcatc 173  Q
     || |||||||||||| ||||    
T  7308331 aagcttctggaagaggccatc 7308311  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 8186543 - 8186633
Alignment:
Q  58 ctctttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaa 148  Q
    |||||||| |||||||||||||||| || ||||||||||| |||| |||| |||| |||||||| | |||||||||  ||||||| |||||    
T  8186543 ctctttcattggcacttttcaaacttcgcaaggttaatctatctaatcataactatatcaacgacaaattgctttttcacttgttaaagaa 8186633  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 7225346 - 7225425
Alignment:
Q  69 gcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaa 148  Q
    |||||||||||||| || | ||||||||||||| ||||| | |||||||| |||  |||||||||| | |||||||||||    
T  7225346 gcacttttcaaactccgtagggttaatctctctggtcatgaatacatcaatgatgaattgcttttccatttgtttaagaa 7225425  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 142
Target Start/End: Complemental strand, 532680 - 532608
Alignment:
Q  70 cacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtt 142  Q
    ||||||||||||| || ||||||||||| |||| |||| |||||||||||||   || ||||||| |||||||    
T  532680 cacttttcaaactccgcaaggttaatctttctactcatgactacatcaacgaccaatcgcttttccacttgtt 532608  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 1518820 - 1518869
Alignment:
Q  73 ttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgat 122  Q
    |||||||||| || ||| |||||||| ||||||||||||| |||||||||    
T  1518820 ttttcaaactccggaagtttaatctcactagtcatcactatatcaacgat 1518869  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 1481631 - 1481563
Alignment:
Q  53 agagcctctttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacga 121  Q
    |||| |||||||| ||||||| |||||||| || ||| |||||||||||  |||| ||||| |||||||    
T  1481631 agaggctctttcattggcactcttcaaactccgcaagcttaatctctctgatcattactacgtcaacga 1481563  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 1601221 - 1601177
Alignment:
Q  212 ttctgctctccgcgaaagaccaacattgaagtctttatccatttc 256  Q
    |||||||||||| || ||||||||||||| |||||||||| ||||    
T  1601221 ttctgctctccgtgagagaccaacattgaggtctttatccttttc 1601177  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 53761152 - 53761192
Alignment:
Q  207 attgtttctgctctccgcgaaagaccaacattgaagtcttt 247  Q
    |||| |||||||||||| |||||||||||||||| ||||||    
T  53761152 attgcttctgctctccgtgaaagaccaacattgacgtcttt 53761192  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 148
Target Start/End: Complemental strand, 9412004 - 9411909
Alignment:
Q  53 agagcctctttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaa 148  Q
    |||| |||||||| || |||||||||||||    ||| ||||||||||| ||||||||||||||||||| | ||  || ||| |||||||||||||    
T  9412004 agagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaa 9411909  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 148
Target Start/End: Original strand, 18314833 - 18314911
Alignment:
Q  70 cacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaa 148  Q
    ||||||||||||| |||||||||||| || ||  |||| ||||||||||||||  || ||||||| ||||||| |||||    
T  18314833 cacttttcaaactccgaaaggttaatttcgctgatcattactacatcaacgatcaatcgcttttccacttgttcaagaa 18314911  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 18314967 - 18315021
Alignment:
Q  204 ggtattgtttctgctctccgcgaaagaccaacattgaagtctttatccatttcca 258  Q
    ||||||| || ||||||||| || |||||||| |||| |||||||||||||||||    
T  18314967 ggtattgcttttgctctccgtgagagaccaactttgaggtctttatccatttcca 18315021  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 51763737 - 51763783
Alignment:
Q  212 ttctgctctccgcgaaagaccaacattgaagtctttatccatttcca 258  Q
    |||||||||||| |||||||||||||||| |||||||||| ||||||    
T  51763737 ttctgctctccgtgaaagaccaacattgacgtctttatccttttcca 51763783  T

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