View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11379_low_68 (Length: 281)

Name: NF11379_low_68
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11379_low_68
NF11379_low_68
[»] chr6 (12 HSPs)
chr6 (19-278)||(6465692-6465951)
chr6 (102-276)||(6528560-6528734)
chr6 (40-278)||(6520148-6520386)
chr6 (48-278)||(6515693-6515920)
chr6 (41-278)||(6505842-6506076)
chr6 (41-278)||(6472628-6472862)
chr6 (39-78)||(1837453-1837492)
chr6 (223-278)||(6461585-6461640)
chr6 (223-278)||(6497032-6497087)
chr6 (223-278)||(13035506-13035561)
chr6 (208-278)||(1841638-1841708)
chr6 (205-249)||(6526737-6526781)
[»] chr1 (1 HSPs)
chr1 (163-271)||(35231143-35231251)
[»] chr7 (3 HSPs)
chr7 (39-258)||(9664883-9665099)
chr7 (208-270)||(4046599-4046661)
chr7 (205-278)||(3753574-3753647)
[»] chr4 (1 HSPs)
chr4 (39-258)||(13535907-13536123)


Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 6465951 - 6465692
Alignment:
Q  19 gcctgattctgatttcaagcatgaagatgttcttgacaggtttagttcttgttaccctttatgcggtgatgctgtttttacaaaaccattttgtgttgag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6465951 gcctgattctgatttcaagcatgaagatgttcttgacaggtttagttcttgttaccctttatgtggtgatgctgtttttacaaaaccattttgtgttgag 6465852  T
Q  119 tataaatgggagaagaaaggttggggggatttattattgttagcacatcctcttcatgttcagcttttgtatgatagtgattgtgataatgttactgttt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6465851 tataaatgggagaagaaaggttggggggatttattattgttagcacatcctcttcatgttcagcttttgtatgatagtgattgtgataatgttactgttt 6465752  T
Q  219 tgactgattttaagtatagaagtattgatggtgatcttgtcggtgttgttggtgattcat 278  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6465751 tgaatgattttaagtatagaagtattgatggtgatcttgttggtgttgttggtgattcat 6465692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 102 - 276
Target Start/End: Complemental strand, 6528734 - 6528560
Alignment:
Q  102 aaccattttgtgttgagtataaatgggagaagaaaggttggggggatttattattgttagcacatcctcttcatgttcagcttttgtatgatagtgattg 201  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||| ||  |||||||||| ||||||||| |||||||||| | ||| |  |||||    
T  6528734 aaccattttgtgttgagtataaatgggagaagaagggttggggtgatttgttgatgttagcacaccctcttcatcttcagcttttatctgagaaagattg 6528635  T
Q  202 tgataatgttactgttttgactgattttaagtatagaagtattgatggtgatcttgtcggtgttgttggtgattc 276  Q
    | | ||| |||||||||||| |||||| ||||||| ||| |||||||| |||||||| ||  |||||| ||||||    
T  6528634 taagaatattactgttttgagtgatttcaagtataaaagcattgatggcgatcttgttggcattgttgctgattc 6528560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 278
Target Start/End: Original strand, 6520148 - 6520386
Alignment:
Q  40 tgaagatgttcttgacaggtttagttcttgttaccctttatgcggtgatgctgtttttacaaaaccattttgtgttgagtataaatgggagaagaaaggt 139  Q
    ||||| || |||||| ||||| |||| |||||||||| |  | ||| ||||||||||||||| || ||| |||||||||||||||||| ||||||| |||    
T  6520148 tgaagctgctcttgataggttcagttgttgttaccctgtgagtggtaatgctgtttttacaacacaattctgtgttgagtataaatggcagaagaagggt 6520247  T
Q  140 tggggggatttattattgttagcacatcctcttcatgttcagcttttgtatga---tagtgattgtgataatgttactgttttgactgattttaagtata 236  Q
    |  || |||||  || |||||||||| ||| | ||| |||| ||||||| |||   || ||||||||   |||||||| |||||| ||||||||||||||    
T  6520248 tcaggtgatttgctactgttagcacaccctttacatattcaacttttgtgtgacactattgattgtg---atgttactattttgagtgattttaagtata 6520344  T
Q  237 gaagtattgatggtgatcttgtcggtgttgttggtgattcat 278  Q
     ||| |||||||| || ||||| |||||  ||||||||||||    
T  6520345 aaagcattgatggagaccttgttggtgtcattggtgattcat 6520386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 48 - 278
Target Start/End: Original strand, 6515693 - 6515920
Alignment:
Q  48 ttcttgacaggtttagttcttgttaccctttatgcggtgatgctgtttttacaaaaccattttgtgttgagtataaatgggagaagaaaggttgggggga 147  Q
    ||||||| |||||||||||||||||||||||||  |||||||||    |||   || | |||||| |||||||||| |  |||||||||||||  || ||    
T  6515693 ttcttgataggtttagttcttgttaccctttatcaggtgatgctaaacttagtgaaacgttttgtcttgagtataagtttgagaagaaaggttcaggtga 6515792  T
Q  148 tttattattgttagcacatcctcttcatgttcagcttttgtatgatagtgattgtgataatgttactgttttgactgattttaagtatagaagtattgat 247  Q
    ||| |||||||||||||| ||||||||| |||| ||||| | | | ||| |  |||   |||| |||||||||  |||||| ||||||  ||| ||||||    
T  6515793 tttgttattgttagcacaccctcttcatattcaacttttatctaaaagtaaaagtg---atgtaactgttttggatgatttcaagtatcaaagcattgat 6515889  T
Q  248 ggtgatcttgtcggtgttgttggtgattcat 278  Q
    || || ||||| |||||||||||||||||||    
T  6515890 ggagaccttgttggtgttgttggtgattcat 6515920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 278
Target Start/End: Complemental strand, 6506076 - 6505842
Alignment:
Q  41 gaagatgttcttgacaggtttagttcttgttaccctttatgcggtgatgctgtttttacaaaaccattttgtgttgagtataaatgggagaagaaaggtt 140  Q
    |||| |||||||||||| |||||||||||| ||||||||   ||| |||||    | | | |||||||||||||||||||||| |  |||||||| | ||    
T  6506076 gaagctgttcttgacagatttagttcttgtcaccctttagcaggtaatgctaaactcagagaaccattttgtgttgagtataagtttgagaagaatgttt 6505977  T
Q  141 ggggggatttattattgttagcacatcctcttcatgttcagcttttgtatgatagtgattgtgataatgttactgtt-ttgactgattttaagtatagaa 239  Q
      || ||||| ||||| |||||||| ||||||||| |||| ||| |||   | |||||  |||||   || |||||| |||| |||||| ||||||| ||    
T  6505976 caggtgatttgttattattagcacaccctcttcatcttcaacttctgtcaaaaagtgagagtgat---gtaactgttcttga-tgatttcaagtatacaa 6505881  T
Q  240 gtattgatggtgatcttgtcggtgttgttggtgattcat 278  Q
    | ||||||||||| ||||| |||||||||||||||||||    
T  6505880 gcattgatggtgaccttgttggtgttgttggtgattcat 6505842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 278
Target Start/End: Original strand, 6472628 - 6472862
Alignment:
Q  41 gaagatgttcttgacaggtttagttcttgttaccctttatgcggtgatgctgtttttacaaaaccattttgtgttgagtataaatgggagaagaaaggtt 140  Q
    |||||||| ||||| | ||  ||||||||||||||||| |  ||||| ||| |  | | | |||| ||| ||||||||||||| |  |||||||||||||    
T  6472628 gaagatgtccttgataagtacagttcttgttaccctttgtcaggtgaagctatgctcaaagaaccgtttagtgttgagtataagtttgagaagaaaggtt 6472727  T
Q  141 ggggggatttattattgttagcacatcctcttcatgttcagcttttgtatgatagtgattgtgataatgttactgttttgactgattttaagtatagaag 240  Q
      || |||||| |  |||||||||| ||||||||| | |||||| ||| | | |||||||     |||| |||  ||||||  ||||||||||||| |||    
T  6472728 caggtgatttactgatgttagcacaccctcttcatctccagcttatgtctaaaagtgattcc---aatgctacctttttgagggattttaagtataaaag 6472824  T
Q  241 tattgatggtgatcttgtcggtgttgttggtgattcat 278  Q
     ||||||||||| ||||| || ||||||||||||||||    
T  6472825 cattgatggtgaacttgttggagttgttggtgattcat 6472862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 1837453 - 1837492
Alignment:
Q  39 atgaagatgttcttgacaggtttagttcttgttacccttt 78  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  1837453 atgaagttgttcttgacaggtttagttcttgttacccttt 1837492  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 278
Target Start/End: Original strand, 6461585 - 6461640
Alignment:
Q  223 tgattttaagtatagaagtattgatggtgatcttgtcggtgttgttggtgattcat 278  Q
    |||||||||||||  ||| |||||||| || ||||| |||||||||||||||||||    
T  6461585 tgattttaagtatcaaagcattgatggagaccttgttggtgttgttggtgattcat 6461640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 6497087 - 6497032
Alignment:
Q  223 tgattttaagtatagaagtattgatggtgatcttgtcggtgttgttggtgattcat 278  Q
    |||||||||||||  ||| |||||||| || ||||| |||||||||||||||||||    
T  6497087 tgattttaagtatcaaagcattgatggagaccttgttggtgttgttggtgattcat 6497032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 278
Target Start/End: Original strand, 13035506 - 13035561
Alignment:
Q  223 tgattttaagtatagaagtattgatggtgatcttgtcggtgttgttggtgattcat 278  Q
    ||||| |||||||| ||| ||||||||||| ||||| || ||||||||||||||||    
T  13035506 tgattataagtataaaagcattgatggtgaacttgttggagttgttggtgattcat 13035561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 278
Target Start/End: Original strand, 1841638 - 1841708
Alignment:
Q  208 tgttactgttttgactgattttaagtatagaagtattgatggtgatcttgtcggtgttgttggtgattcat 278  Q
    |||||||||||||| | |||||||||||| ||| ||| |||  || ||||||  |||||||||||||||||    
T  1841638 tgttactgttttgagttattttaagtataaaagcatttatgcagagcttgtcaatgttgttggtgattcat 1841708  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 6526781 - 6526737
Alignment:
Q  205 taatgttactgttttgactgattttaagtatagaagtattgatgg 249  Q
    ||||||||||||||||| |||||||||||||| | | ||||||||    
T  6526781 taatgttactgttttgagtgattttaagtataaacgcattgatgg 6526737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 163 - 271
Target Start/End: Original strand, 35231143 - 35231251
Alignment:
Q  163 acatcctcttcatgttcagcttttgtatgatagtgattgtgataatgttactgttttgactgattttaagtatagaagtattgatggtgatcttgtcggt 262  Q
    ||||||||||||| |||||||||| | ||| | ||||||| |||||||||||||||||| |||||||||||||| ||| |||||| |||| ||||| |||    
T  35231143 acatcctcttcatcttcagcttttatctgagaatgattgtaataatgttactgttttgaatgattttaagtataaaagcattgatagtgaacttgttggt 35231242  T
Q  263 gttgttggt 271  Q
    |||||||||    
T  35231243 gttgttggt 35231251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 258
Target Start/End: Original strand, 9664883 - 9665099
Alignment:
Q  39 atgaagatgttcttgacaggtttagttcttgttaccctttatgcggtgatgctgtttttacaaaaccattttgtgttgagtataaatgggagaagaaagg 138  Q
    |||||| ||||||||||| ||||||  |||||||||||||||  ||| | | | |||||  |||||| |||| ||| |||||||| ||| ||||| ||||    
T  9664883 atgaagctgttcttgacaagtttagcacttgttaccctttatcaggtaaagttatttttggaaaaccgttttctgtggagtataagtggaagaaggaagg 9664982  T
Q  139 ttggggggatttattattgttagcacatcctcttcatgttcagcttttgtatgatagtgattgtgataatgttactgttttgactgattttaagtataga 238  Q
     || || || || ||| || | || ||  |||| ||| |||  ||||||||||||| ||||||||||   ||||| || ||||||  ||||||||||| |    
T  9664983 gtgtggtgaattgttaatggtggctcacgctctccatcttcgccttttgtatgatattgattgtgat---gttacggtattgacttgttttaagtataaa 9665079  T
Q  239 agtattgatggtgatcttgt 258  Q
    || |||||||||||||||||    
T  9665080 agcattgatggtgatcttgt 9665099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 270
Target Start/End: Complemental strand, 4046661 - 4046599
Alignment:
Q  208 tgttactgttttgactgattttaagtatagaagtattgatggtgatcttgtcggtgttgttgg 270  Q
    |||||||||| | | |||||||||||||| |||| |||||||||||||||| |||||||||||    
T  4046661 tgttactgttcttaatgattttaagtataaaagtgttgatggtgatcttgttggtgttgttgg 4046599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 3753574 - 3753647
Alignment:
Q  205 taatgttactgttttgactgattttaagtatagaagtattgatggtgatcttgtcggtgttgttggtgattcat 278  Q
    ||||||||||||||||  |||||| ||||||| |||| | ||||||||||| || |||||| | || |||||||    
T  3753574 taatgttactgttttgcatgatttgaagtatacaagtgtcgatggtgatctcgttggtgttatcggagattcat 3753647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 258
Target Start/End: Original strand, 13535907 - 13536123
Alignment:
Q  39 atgaagatgttcttgacaggtttagttcttgttaccctttatgcggtgatgctgtttttacaaaaccattttgtgttgagtataaatgggagaagaaagg 138  Q
    |||||| ||||||||||| ||||||  |||||||||||||||  ||| | | | |||||  |||||| |||| ||| |||||||| ||| ||||| ||||    
T  13535907 atgaagctgttcttgacaagtttagcacttgttaccctttatcaggtaaagttatttttggaaaaccgttttctgtggagtataagtggaagaaggaagg 13536006  T
Q  139 ttggggggatttattattgttagcacatcctcttcatgttcagcttttgtatgatagtgattgtgataatgttactgttttgactgattttaagtataga 238  Q
     || || || || ||| || | || ||  |||| ||| |||  ||||||||||||| ||||||||||   ||||| || ||||||  ||||||||||| |    
T  13536007 gtgtggtgaattgttaatggtggctcacgctctccatcttcgccttttgtatgatattgattgtgat---gttacggtattgacttgttttaagtataaa 13536103  T
Q  239 agtattgatggtgatcttgt 258  Q
    || |||||||||||||||||    
T  13536104 agcattgatggtgatcttgt 13536123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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