View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_7 (Length: 614)
Name: NF11379_low_7
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 285 - 598
Target Start/End: Complemental strand, 9234302 - 9233989
Alignment:
| Q |
285 |
ttttcaacttcgacatgcaaaatggtagacccgatcccaacaactagaaccattaatttaatctctctttttcatcaattccattcacacaccctccatt |
384 |
Q |
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| T |
9234302 |
ttttcaacctcgacatgcaaaatggtagacccgatcccaacaactagaaccattaatttaatctctctttttcatcaattccattcacacaccctccatt |
9234203 |
T |
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| Q |
385 |
gttttaagcttcagatttctcaactggaacttcttctgctgctggagcttccactgactcaactggtttaacattctcttcctcagcagttactgctgct |
484 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9234202 |
gttttaagcttcagatttctcaactggaacttcttctgctgctggagcttccactgactcaactggtttaacattctcttcctcagcagttactgctgct |
9234103 |
T |
|
| Q |
485 |
ggtgcttctgactcattttcaatggttgctacaggctcctccactactgctgcagcctcttccttcacttcttcaactgattcctctgtttctttaggtg |
584 |
Q |
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| T |
9234102 |
ggtgcttctgactcattttcaatggttgctacaggctcctccactactgctgcagcctcttccttcacttcttcaactgattcctctgtttctttaggtg |
9234003 |
T |
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| Q |
585 |
cttctgtattctct |
598 |
Q |
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| T |
9234002 |
cttctgtattctct |
9233989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 9234573 - 9234363
Alignment:
| Q |
14 |
aggaacacaccatgaaaaactcatgtaaccttcccaagaaccatagcaccttatagctgatcacttcaatacacaactcatggaatgaaatttcacatca |
113 |
Q |
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| T |
9234573 |
aggaacacaccatgaaaaactcatgtaaccttcccaagaaccatagcaccttatagctgatcacttcaatacacaactcatggaatgaaatttcacatca |
9234474 |
T |
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| Q |
114 |
gatgtccaccattcaacatgtatatatatgctgacatggagcaaagttccatacataactgatgtagatagctataccctccatatgaataaccatttcc |
213 |
Q |
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| T |
9234473 |
catgtccaccattcagcatgtatatatatgctgacatggagtaaagttccatacataactgatgtagatagctataccctccatatgaataaccatttcc |
9234374 |
T |
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| Q |
214 |
aaagacttact |
224 |
Q |
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||||||||||| |
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| T |
9234373 |
aaagacttact |
9234363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 9246010 - 9245933
Alignment:
| Q |
17 |
aacacaccatgaaaaactcatgtaaccttcccaagaaccatagcaccttatagctgatcacttcaatacacaactcat |
94 |
Q |
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| T |
9246010 |
aacacactacgacaaagtcatggaaccttcccaagaaccatatcaccttatagttgatgacttcaatacacgactcat |
9245933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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