View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_71 (Length: 260)
Name: NF11379_low_71
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 86 - 245
Target Start/End: Complemental strand, 3350226 - 3350067
Alignment:
| Q |
86 |
aattaaagattagcaagcaaaactttatttttgtatatccatccttgcttaaatatttcctatggaacttcccttatcatgcattgagcgtagggttcaa |
185 |
Q |
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| T |
3350226 |
aattaaagattagcaagcaaaactttatttttgtatatccaaccttgcttaaatatttcctatggaacttcccttatcatgcattgagcgtagggttcga |
3350127 |
T |
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| Q |
186 |
aagataaagaaaaatatattctcatcgaattttgatctctataattttgtatgcccttct |
245 |
Q |
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| T |
3350126 |
aagataaagaaaaatatattctcatcgaattttgatctctataattttgtattcccttct |
3350067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 79 - 245
Target Start/End: Complemental strand, 3375635 - 3375473
Alignment:
| Q |
79 |
ctcatcaaattaaagattagcaagcaaaactttatttttgtatatccatccttgcttaaatatttcctatggaacttcccttatcatgcattgagcgtag |
178 |
Q |
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| T |
3375635 |
ctcatcaagctatagattagcaagcaaaactttatttttgtatatcc----ttgcttaaatatttcctatggaacttcccttatcatgcattgagcgtag |
3375540 |
T |
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| Q |
179 |
ggttcaaaagataaagaaaaatatattctcatcgaattttgatctctataattttgtatgcccttct |
245 |
Q |
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| T |
3375539 |
ggttcgaaagataaagaaaaatatattctcatcgaattttgatctctataattttgtatgcccttct |
3375473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 3350276 - 3350227
Alignment:
| Q |
11 |
cacagacgaaaaaactcatgcaaacaaacattataaatacatgtcataat |
60 |
Q |
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| T |
3350276 |
cacagacgaaaaaactcatgcaaacaaacattataaatacatgtcataat |
3350227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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