View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_74 (Length: 249)
Name: NF11379_low_74
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_74 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 249
Target Start/End: Original strand, 1325237 - 1325479
Alignment:
| Q |
7 |
agagaagaatgcagatccacatgcaggtgttaaaggatttgaagtgatagaaagagccaaggcacaattagaagcatcctgtccaggagtggtttcttgt |
106 |
Q |
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| T |
1325237 |
agagaagactgcatttccacatgcaggtgttaaaggatttgaagtgatagaaagagccaaggcacaattagaagcatcctgtccaggagtggtttcttgt |
1325336 |
T |
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| Q |
107 |
gcagatattgttgcattggcagcaagagatgcaattgtcatggtcctaattcctaacttactctattatatttcattctctagtattgtccacaaagcnn |
206 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1325337 |
gcagatattgttgcattggcagctagagatgcaattgtcatggtcctaattcctaacttactctattatatttcattctctagtattgtccacaaagctt |
1325436 |
T |
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| Q |
207 |
nnnnncttcttcaagaagtttaatgcttctgcattaactgtta |
249 |
Q |
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||||||||||||||||||||||||| |||||||||||| |
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| T |
1325437 |
tttttcttcttcaagaagtttaatgcttctccattaactgtta |
1325479 |
T |
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