View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_76 (Length: 249)
Name: NF11379_low_76
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_76 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 52844561 - 52844318
Alignment:
| Q |
1 |
ccactgcttgtttgcccatacgcgaaaatgctagctgagattaaaattcattgatgaaaaacaaaaatgaaattttgatcagccaccataacaatagata |
100 |
Q |
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| T |
52844561 |
ccactgcttgtttgcccatacgcgaaaatgctagctgagattaaaattcattgatgaaaaacaaaaatgaaattttgatcagccaccataacaatagata |
52844462 |
T |
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| Q |
101 |
aataaaatcaccaagcatataacaagaacgggaataatattactcacagttgatacccctaattactgaaagggcaacttccttaatcccttgctcataa |
200 |
Q |
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| T |
52844461 |
aataaaatcaccaagcatataacaagaacgggaataatattactcacagttgatacccctaattactgaaagggcaacttccttaatcccttgctcataa |
52844362 |
T |
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| Q |
201 |
acctgcttagtgggacatttttctccaaataccctctctgcttc |
244 |
Q |
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| T |
52844361 |
acctgcttagtgggacatttttctccaaataccctatctgcttc |
52844318 |
T |
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