View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_77 (Length: 245)
Name: NF11379_low_77
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_77 |
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Alignment Details
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 39675353 - 39675263
Alignment:
| Q |
55 |
tgtgcacagactaattaagttttaaaaaactagtgttattnnnnnnnncaaatttgaaagaaacaaagttttaaataattcgttgaacgtaa |
146 |
Q |
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| T |
39675353 |
tgtgcacagactaattaagttttaaaaaactagtgttat-aaaaaaaacaaatttgaaagaaacaaagttttaaataattcattgaacgtaa |
39675263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 39675436 - 39675407
Alignment:
| Q |
3 |
cacatcatcacaagaagcctttacttgact |
32 |
Q |
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| T |
39675436 |
cacatcatcacaagaagcctttacttgact |
39675407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 39675245 - 39675213
Alignment:
| Q |
164 |
caaacttagcgactaacgttttaaatgatggag |
196 |
Q |
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| T |
39675245 |
caaaattagcgactaacgttttaaatgatggag |
39675213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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