View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_78 (Length: 242)
Name: NF11379_low_78
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_78 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 1330337 - 1330566
Alignment:
| Q |
1 |
actgcaagaaaaagtggagaaactaaaagttaataaaaggaaccagtgtttgagagcaccacaagccaacacacagattaattagtgcaaaattaccctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1330337 |
actgcaagaaaaagtggagaaactaaaagttaataaaaggaaccagtgtttgagagcaccgcaagccaacacacagattaattagtgcaaaattaccctt |
1330436 |
T |
|
| Q |
101 |
gtcatcatcttcgtcttctatcctacttgtactaccagggtcttcatcaacagcaatggcaacataatcgctattgcccttgcgcaaacttcgaacttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1330437 |
gtcatcatcttcgtcttctatcctacttgtactaccagggtcttcatcaacagcaatggcaacataatcgctattgcccttgcgcaaacttcgaacttga |
1330536 |
T |
|
| Q |
201 |
ggtgtaacaaaagtcccagttgatgtccat |
230 |
Q |
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||||||||||||||||| |||| ||||||| |
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| T |
1330537 |
ggtgtaacaaaagtccccgttgttgtccat |
1330566 |
T |
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