View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11379_low_79 (Length: 241)
Name: NF11379_low_79
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_79 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 35 - 241
Target Start/End: Original strand, 27329003 - 27329209
Alignment:
| Q |
35 |
aagaattgggaactagtagtgttcattttaaggtacaccatgaaaccnnnnnnnnnattctttaaaagtgctctaacttcatgtttgtaagacctttatt |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27329003 |
aagaattgggaactagtagtgttcattttaaggtacaccatgaaacctttttttttattctttaaaagtgctctaacttcatgtttgcaagacctttatt |
27329102 |
T |
|
| Q |
135 |
aaccaggaacaccagaatagattaaccaaaagaatggcccataattgcgtgcaaattttatctcatcccattattatatattttttggttgcatctctat |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27329103 |
aaccaggaacaccagaatagattaaccaaaagaatggcccataattgcgtgcaaattttatctcatcccattattatatattttttggttgcatctctat |
27329202 |
T |
|
| Q |
235 |
ctcctaa |
241 |
Q |
| |
|
||||||| |
|
|
| T |
27329203 |
ctcctaa |
27329209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University