View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_8 (Length: 594)
Name: NF11379_low_8
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 486; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 19 - 581
Target Start/End: Original strand, 5771344 - 5771901
Alignment:
| Q |
19 |
gtttgctcacttgtaccatcattaattgttttctatacgttgttcgacatacattgtcttcttttttgtcaaaatttttctcatatatgtatatgtgttc |
118 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5771344 |
gtttgttcacttgtaccatcattaattgttttctatacgttgttcgacatacattgtcttcttttttgtcaaaatttttctcatatatgtatatgtgttc |
5771443 |
T |
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| Q |
119 |
gtcctttgtatgattgattaaatttctcatatttaatcatagattagaaactgagaatggaggaagagaatatagaaaggaaatcatttaaggatattgg |
218 |
Q |
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| T |
5771444 |
gttctttgtatgattgattaaatttctcatatttaatcatagattagaaactgagaatggaggaagagaatatagaaaggaaatcatttaaggatattgg |
5771543 |
T |
|
| Q |
219 |
cttatctgagcttgtgaaatcattttctgtactaacccttttcttaatccaaacagctttgctactcaaataataactgaacattttgaagctctaggta |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
5771544 |
cttatctgagcttgtgaaatcattttctgtactaacccttttcttaatccaaacagc-ttgctactca---aataactgaacattttgaagctctaggta |
5771639 |
T |
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| Q |
319 |
ggttctgaaattagtgtaagtgtagtgtgtcgtggtgagtttctaatacatttttcttacatgattcgtcatacatgaattttatgcctcgctcaaaaca |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5771640 |
ggttctgaaattagtgtaagtgtagtgtgtcgtggtgagtttctaatacatttttcttacatgattcgtcatacatgaattttatgcctcgctcaaaaca |
5771739 |
T |
|
| Q |
419 |
taggttatgtttgtttttgttttgtccaatgaggcataagcatactaaaaaatctattttgattggtatattctcnnnnnnnctatagcttgttggaagg |
518 |
Q |
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| T |
5771740 |
taggttatgtttgtttttgttttgtccaatgaggcataagcatactaaaaaatctattttgattggtatattctctttttttctatagcttgttggaagg |
5771839 |
T |
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| Q |
519 |
tttgacatgttacgacaatctaagacnnnnnnngctacctcatattattgtaagtgatgtcca |
581 |
Q |
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| T |
5771840 |
tttgacatgttacgacaatctaagac-aacaaagctacctcatattattgtaagtgatgtcca |
5771901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 76 - 227
Target Start/End: Original strand, 5765471 - 5765617
Alignment:
| Q |
76 |
cttcttttttgtcaaaatttttctcatatatgtatatgtgttcgtcctttgtatgattgattaaatttctcatatttaatcatagattagaaactgagaa |
175 |
Q |
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| T |
5765471 |
cttcttttttgtcaatttttttttcatatatgtacttgtgttcgtcctttgtataattgattaaatttctcatatttaatcataggttagaaactgagaa |
5765570 |
T |
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| Q |
176 |
tggaggaagagaatatagaaaggaaatcatttaaggatattggcttatctga |
227 |
Q |
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| T |
5765571 |
t-----aagagaatatagaaatgaaatcatttaaggatcttggcttatctga |
5765617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 5765384 - 5765432
Alignment:
| Q |
19 |
gtttgctcacttgtaccatcattaattgttttctatacgttgttcgaca |
67 |
Q |
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| T |
5765384 |
gtttgctcacttgtaccatcattaattgttttatatacggtgtttgaca |
5765432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 20525401 - 20525341
Alignment:
| Q |
162 |
ttagaaactgagaatggaggaagagaatatagaaaggaaatcatttaaggatattggctta |
222 |
Q |
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| T |
20525401 |
ttagaaactgagaatggaggaagagaacaaagaaatgaaatcatttaaggatctcggctta |
20525341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 30642685 - 30642745
Alignment:
| Q |
162 |
ttagaaactgagaatggaggaagagaatatagaaaggaaatcatttaaggatattggctta |
222 |
Q |
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||||||||||||||||||||||||||| | ||||| |||||||||||||||| | |||||| |
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| T |
30642685 |
ttagaaactgagaatggaggaagagaacaaagaaatgaaatcatttaaggatctcggctta |
30642745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 12119833 - 12119770
Alignment:
| Q |
159 |
agattagaaactgagaatggaggaagagaatatagaaaggaaatcatttaaggatattggctta |
222 |
Q |
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| T |
12119833 |
agattagaaagtgataatggaggaagagaataaagaaatcaaatcatttaaagatcttggctta |
12119770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 11923000 - 11923081
Alignment:
| Q |
150 |
tttaatcatagattagaaactgagaat--ggaggaagagaatatagaaaggaaatcatttaaggatattggcttatctgagc |
229 |
Q |
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|||| |||||| |||| |||||||||| ||| |||||||||| ||||| |||||||||||||||| | || |||||||||| |
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| T |
11923000 |
tttattcataggttagtaactgagaatatggaagaagagaataaagaaatgaaatcatttaaggatctgggtttatctgagc |
11923081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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