View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_80 (Length: 241)
Name: NF11379_low_80
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_80 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 52844767 - 52844546
Alignment:
| Q |
20 |
tctaacagcttaattatatatttccaaggcagagaacttcacaataaactctctttctttatgctgagatacaagnnnnnnnntgtcannnnnnnnngtc |
119 |
Q |
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| T |
52844767 |
tctaacagcttcattatatatttccaaggcagagaacttcacaataaactctctttctttatgctgagatacaagaaaaaaaatgtcatttttttttgtc |
52844668 |
T |
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| Q |
120 |
aaaaatcaaacaatatcgtctattcaaattgttttataccttttctatgtattcatagatatccttcactgcaagttcagtaattccagtcatggtatat |
219 |
Q |
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| T |
52844667 |
aaaaatcaaacaatatcgtctattcaaattgttttataccttttctatgtattcatagatatccttcactgcaagttcagtaattccagtcatggtatat |
52844568 |
T |
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| Q |
220 |
gtctttccactgcttgtttgcc |
241 |
Q |
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| T |
52844567 |
gtctttccactgcttgtttgcc |
52844546 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 32260724 - 32260681
Alignment:
| Q |
196 |
tcagtaattccagtcatggtatatgtctttccactgcttgtttg |
239 |
Q |
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| T |
32260724 |
tcagtaataccactcatggtgtatgtctttccactgcttgtttg |
32260681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 27278037 - 27277986
Alignment:
| Q |
190 |
gcaagttcagtaattccagtcatggtatatgtctttccactgcttgtttgcc |
241 |
Q |
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| T |
27278037 |
gcaaattcagttattccaaccatagtatatgtctttccactgcttgtttgcc |
27277986 |
T |
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