View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11379_low_87 (Length: 217)

Name: NF11379_low_87

Description: NF11379

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11379_low_87

[»] chr5 (2 HSPs)

[»] chr8 (1 HSPs)

Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 2)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 109; E-Value: 5e-55

Query Start/End: Original strand, 44 - 194

Target Start/End: Complemental strand, 36227156 - 36226996

Alignment:

Q	44	gtagttaaaaccagttagttgtttgttagctattttgatcgagttggttggttttgattgattacttgtattgcaagtaaggcacataagttgttt----	139	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36227156	gtagttaaaaacagttagttgtttgttagctattttgatcgagttggttggttttgattgattacttgtattgcaagtaagccacataagttgtttatat	36227057	T

Q	140	--gcttgtaatcttagattttcattac----taacgagaacatagtttacaatcacattga	194	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36227056	aagcttgtaatcttagattttcattactaaataatgagaacatagtttacaatcacattga	36226996	T

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Target: chr5; HSP #2

Raw Score: 76; E-Value: 3e-35

Query Start/End: Original strand, 44 - 194

Target Start/End: Complemental strand, 36223107 - 36222951

Alignment:

Q	44	gtagttaaaaccagttagttgtttgttagctattttgatcgagttggttggttttgattgattacttgtattgcaagtaaggcacataagttgtt-----	138	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\| \|\|\|
T	36223107	gtagttaaaaacagttagtttttggttagctattttgatggagttagttagttt-gattgattacttgtattgcaagtaagccatataagtagttgtata	36223009	T

Q	139	--tgcttgtaatcttagattttcattactaacgagaacatagtttacaatcacattga	194	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36223008	taagcttgtaatctcagattttcattactaatgagaacatagtttacaatcacattga	36222951	T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 41; E-Value: 0.00000000000002

Query Start/End: Original strand, 44 - 124

Target Start/End: Original strand, 28067296 - 28067375

Alignment:

Q	44	gtagttaaaaccagttagttgtttgttagctattttgatcgagttggttggttttgattgattacttgtattgcaagtaag	124	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	28067296	gtagttaaaac-agttattagtttgttagctattttgatggagttagttagttttgaataattacttgtattggaagtaag	28067375	T

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