View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11379_low_88 (Length: 213)
Name: NF11379_low_88
Description: NF11379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11379_low_88 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 23658248 - 23658468
Alignment:
| Q |
1 |
ataagaagaaaagagacactaaacgagagaaaaga-------ccgacaagaaaccactatccattagagaaatgatgacacacatataacctatactttt |
93 |
Q |
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| T |
23658248 |
ataagaagaaaagagacactaaacgagagaaaagagtaaagaccgacaagaaaccactatccattagagaaatgatgacatacatataacctatactttt |
23658347 |
T |
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| Q |
94 |
ctttctnnnnnnn-tgaatgccaccaattacacaaataatacaaggtagaattctatccaacaaatattcctcaattgacatgtcatgtagaaacaaaga |
192 |
Q |
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|||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23658348 |
ctttctaaaaaaaatgaatgctaccaattacgcaaataatacaaggtagaattctatccaacaaatattcctcaattgacatgtcatgtagaaacaaaga |
23658447 |
T |
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| Q |
193 |
tgataaaaactcaacatattt |
213 |
Q |
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||||||||||||||||||||| |
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| T |
23658448 |
tgataaaaactcaacatattt |
23658468 |
T |
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