View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1137_high_100 (Length: 316)
Name: NF1137_high_100
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_high_100 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 6 - 311
Target Start/End: Complemental strand, 38835052 - 38834747
Alignment:
| Q |
6 |
agtgacaatgattccgatgaggatgcagaattatcagattttgtagaagtcaactagactattcccgcaattgcactacaatgtaactgaaattttatgc |
105 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38835052 |
agtgacaatgattccgatgagtatgcagaattatcagattttgtagaagtcaactagactattcccgcaattgcactacaatgtaactgaaattttatgc |
38834953 |
T |
|
| Q |
106 |
tttagtgaaactagattttggctgtaccaatattctgtaaaacttttatctgaactcctgagttttcatgaatgaatcagatttgactctagccatcttt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38834952 |
tttagtgaaactagattttggctgtaccaatattctgtaaaacttttatctgaacaactgagtttgcatgaatgaatcagatttgactctagccatcttt |
38834853 |
T |
|
| Q |
206 |
cttctattccttatggagatatacatttgaattgaatggttcaaaagttggatttttaatattttatataggatggggaatttctctattatcttccttt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
38834852 |
cttctattccttatggagatatacatttgaattgaatggttcaaaagttggatttttaatattttatataggatggagaatttctctattatctttcttt |
38834753 |
T |
|
| Q |
306 |
gcttct |
311 |
Q |
| |
|
| |||| |
|
|
| T |
38834752 |
gtttct |
38834747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University