View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_high_104 (Length: 312)
Name: NF1137_high_104
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_high_104 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 28 - 297
Target Start/End: Original strand, 4865804 - 4866072
Alignment:
| Q |
28 |
caacatgaacaataatcttatacattataattcgagcaagctctggggtaaaa-cactacatgtg--tgtagttgtgggtatgtacacatatgtacgccc |
124 |
Q |
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| T |
4865804 |
caacatgaacaataatcttatacattataattcgagcaagctctggggtaaaaacactacatgtgggtgtagttgtgggtatgtaca----tgtacgccc |
4865899 |
T |
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| Q |
125 |
ttgaatcttgtatatattttgcactcattctttacacatatttcgaagactctaagcatagttcctagttgatgagacgttgatttgtaaaatcatctcc |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
4865900 |
ttgaatcttgtatatattttgcactcattctttacacatatttcgaagactctaagcatagttcctacttgatgagacgtcgatttgtaaaatcatctcc |
4865999 |
T |
|
| Q |
225 |
gctcgcattaaacgggtaataggtatcataattgatctttaaaacatattggtcttcttattcgtttgggtct |
297 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4866000 |
gctcgcattaaaccggtaataggtatcataattgatctttaaaacatattggtcttcttattcgttttggtct |
4866072 |
T |
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