View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1137_high_110 (Length: 297)
Name: NF1137_high_110
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_high_110 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 54770217 - 54770457
Alignment:
| Q |
14 |
aggcatgaatagtcggtcggacttagtggtagagcaccatatatcacatatataccagctgacttgtattgacagctaaatttcaagagatcaataaaaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
54770217 |
aggcatgaatagtcggtcggacttagtggtagagcaccatatatcacatatat----------------tgacagctaaatttcaagagatcaataaaaa |
54770300 |
T |
|
| Q |
114 |
ccagactatatacacactagttata--cccttttcattaacaagttttggaccattgtnnnnnnnntatgtatccaacatttaatttcttaaaataaaat |
211 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||| |
|
|
| T |
54770301 |
ccagactatatacacactagttatatacccttttcattaacaagttttggaccatcgtaaaaaaaaaatatatccaacatttaatttcttaaaataaaat |
54770400 |
T |
|
| Q |
212 |
tgagaaaaatgttaatttagacaagttactacgatatttattgtatgtaatcctcta |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54770401 |
tgagaaaaatgttaatttagacaagttactacgatatttattgtatgtaatcctcta |
54770457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University