View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_high_116 (Length: 286)

Name: NF1137_high_116
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_high_116
NF1137_high_116
[»] chr5 (14 HSPs)
chr5 (10-259)||(37900416-37900665)
chr5 (10-52)||(25683229-25683271)
chr5 (10-55)||(12806850-12806895)
chr5 (10-53)||(10285057-10285100)
chr5 (10-53)||(23097723-23097766)
chr5 (10-53)||(30720491-30720534)
chr5 (10-52)||(36561099-36561141)
chr5 (10-52)||(40886610-40886652)
chr5 (14-54)||(734576-734616)
chr5 (14-53)||(39070882-39070921)
chr5 (10-52)||(734339-734381)
chr5 (11-53)||(25773885-25773927)
chr5 (14-54)||(11319557-11319597)
chr5 (10-50)||(16983492-16983532)
[»] chr1 (15 HSPs)
chr1 (10-53)||(23526474-23526517)
chr1 (10-54)||(33082979-33083023)
chr1 (10-54)||(284568-284612)
chr1 (10-54)||(24771904-24771948)
chr1 (10-54)||(40783655-40783699)
chr1 (10-52)||(23045279-23045321)
chr1 (10-52)||(47037852-47037894)
chr1 (10-47)||(46771873-46771910)
chr1 (20-52)||(321871-321903)
chr1 (14-52)||(24772144-24772182)
chr1 (14-52)||(51064995-51065033)
chr1 (13-54)||(40562284-40562325)
chr1 (14-54)||(9588668-9588708)
chr1 (10-46)||(27210961-27210997)
chr1 (14-54)||(44227846-44227886)
[»] chr6 (10 HSPs)
chr6 (10-54)||(15064693-15064737)
chr6 (10-53)||(17942678-17942721)
chr6 (10-54)||(1605813-1605857)
chr6 (10-54)||(8626717-8626761)
chr6 (10-52)||(7761535-7761577)
chr6 (10-52)||(29260427-29260469)
chr6 (20-52)||(4129671-4129703)
chr6 (10-53)||(13757442-13757485)
chr6 (14-52)||(8626482-8626520)
chr6 (10-52)||(31559738-31559780)
[»] chr3 (11 HSPs)
chr3 (10-52)||(18355868-18355910)
chr3 (14-54)||(37293435-37293475)
chr3 (10-53)||(19241667-19241710)
chr3 (10-53)||(29375367-29375410)
chr3 (10-53)||(36881515-36881558)
chr3 (10-52)||(13365078-13365120)
chr3 (11-53)||(13703448-13703490)
chr3 (10-52)||(46694110-46694152)
chr3 (10-54)||(48820575-48820619)
chr3 (10-53)||(23087930-23087973)
chr3 (22-52)||(32834989-32835019)
[»] chr2 (10 HSPs)
chr2 (10-52)||(12969740-12969782)
chr2 (10-52)||(40756911-40756953)
chr2 (10-54)||(23367024-23367068)
chr2 (10-53)||(22388137-22388180)
chr2 (21-54)||(1102747-1102780)
chr2 (10-54)||(3519142-3519186)
chr2 (10-54)||(39938405-39938449)
chr2 (10-52)||(1646522-1646564)
chr2 (11-52)||(37673743-37673784)
chr2 (14-54)||(3518906-3518946)
[»] chr8 (18 HSPs)
chr8 (10-55)||(11174220-11174265)
chr8 (10-55)||(11646322-11646367)
chr8 (10-54)||(2539928-2539972)
chr8 (10-54)||(30999522-30999566)
chr8 (10-54)||(43275397-43275441)
chr8 (10-53)||(36068315-36068358)
chr8 (10-52)||(7147148-7147190)
chr8 (10-52)||(40058303-40058345)
chr8 (10-52)||(40918731-40918773)
chr8 (10-53)||(27035230-27035273)
chr8 (14-53)||(28562420-28562459)
chr8 (14-53)||(28567918-28567957)
chr8 (14-53)||(28575511-28575550)
chr8 (14-52)||(37345571-37345609)
chr8 (10-52)||(37345806-37345848)
chr8 (14-52)||(40486468-40486506)
chr8 (13-54)||(28562659-28562700)
chr8 (10-54)||(3585686-3585730)
[»] chr4 (13 HSPs)
chr4 (10-54)||(20249012-20249056)
chr4 (10-54)||(25704886-25704930)
chr4 (10-54)||(44569072-44569116)
chr4 (10-53)||(14261279-14261322)
chr4 (10-53)||(21310656-21310699)
chr4 (10-53)||(24706246-24706289)
chr4 (10-52)||(12071795-12071837)
chr4 (10-56)||(22321264-22321310)
chr4 (10-50)||(21661537-21661577)
chr4 (10-50)||(21670301-21670341)
chr4 (20-54)||(39295421-39295455)
chr4 (10-52)||(40122487-40122529)
chr4 (10-51)||(21064996-21065037)
[»] chr7 (7 HSPs)
chr7 (10-53)||(27814046-27814089)
chr7 (10-53)||(40349196-40349239)
chr7 (10-54)||(36453122-36453166)
chr7 (10-53)||(25614352-25614395)
chr7 (10-57)||(47110685-47110732)
chr7 (14-54)||(25060148-25060188)
chr7 (14-54)||(27813809-27813849)
[»] scaffold0054 (1 HSPs)
scaffold0054 (10-52)||(45688-45730)
[»] scaffold1770 (1 HSPs)
scaffold1770 (20-52)||(406-438)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 37900665 - 37900416
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtattgaacatgactaaccacaattttgaatcgcgctaaacacattgtcaaattttaatt 109  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37900665 attattcttcaaaatagacaagtattatgaaacggaaggagtattgaacatgactaaccacgattttgaatcgcgctaaacacattgtcaaattttaatt 37900566  T
Q  110 gtttaaataacactaatgtgatagtctttaaactcatgatatatttaatatttcattttcttttttgtttcaaagagtgatgcggtgaaactcatccgcg 209  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37900565 gtttaaataacactaatgtgatagtctttaaactcatgatatgtttaatatttcattttcttttttgtttcaaagagtgatgcggtgaaactcatccgcg 37900466  T
Q  210 tctcaacatataaaatatctatgcaattctttaccaaatgagctgtactt 259  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  37900465 tctcaacatatgaaatatctatgcaattctttaccaaatgagttgtactt 37900416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 25683271 - 25683229
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  25683271 attattctccaaaatggacaagtattatgaaacggagggagta 25683229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 12806895 - 12806850
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtattg 55  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||    
T  12806895 attattctctaaaatggacaagtattatgaaacggagggagtattg 12806850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 10285100 - 10285057
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtat 53  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||    
T  10285100 attattctttaaaatagacaagtattatgaaacggagggagtat 10285057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 23097766 - 23097723
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtat 53  Q
    |||||||| ||||||||||||||||||||||||||| |||||||    
T  23097766 attattctccaaaatggacaagtattatgaaacggaaggagtat 23097723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 30720534 - 30720491
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtat 53  Q
    ||||||||  ||||||||||||||||||||||||||||||||||    
T  30720534 attattctctaaaatggacaagtattatgaaacggagggagtat 30720491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 36561141 - 36561099
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  36561141 attattctctaaaatggacaagtattatgaaacggagggagta 36561099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 40886652 - 40886610
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  40886652 attattctctaaaatggacaagtattatgaaacggagggagta 40886610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 734576 - 734616
Alignment:
Q  14 ttcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    |||||||||||||||||||||| ||||||||||||| ||||    
T  734576 ttcttcaaaatggacaagtattgtgaaacggagggaatatt 734616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 39070921 - 39070882
Alignment:
Q  14 ttcttcaaaatggacaagtattatgaaacggagggagtat 53  Q
    |||||||||||| ||||||||| |||||||||||||||||    
T  39070921 ttcttcaaaatgaacaagtattgtgaaacggagggagtat 39070882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 734381 - 734339
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||| ||||||||||||||||| |||||||| |||||||    
T  734381 attattctccaaaatggacaagtattgtgaaacggtgggagta 734339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 25773885 - 25773927
Alignment:
Q  11 ttattcttcaaaatggacaagtattatgaaacggagggagtat 53  Q
    |||||||  ||||||||||||||||||||||||||| ||||||    
T  25773885 ttattctctaaaatggacaagtattatgaaacggagagagtat 25773927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 11319597 - 11319557
Alignment:
Q  14 ttcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    ||||||||||||||||| |||| ||||||||||| ||||||    
T  11319597 ttcttcaaaatggacaaatattgtgaaacggaggaagtatt 11319557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 16983492 - 16983532
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggag 50  Q
    ||||||||||||||| |||||||||||| |||| |||||||    
T  16983492 attattcttcaaaatagacaagtattataaaacagagggag 16983532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 23526474 - 23526517
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtat 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  23526474 attattcttcaaaatggacaagtattatgaaacggagggagtat 23526517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 33082979 - 33083023
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  33082979 attattctttaaaatggacaagtattatgaaacggagggagtatt 33083023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 284568 - 284612
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  284568 attattctctaaaatggacaagtattatgaaacggagggagtatt 284612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 24771948 - 24771904
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  24771948 attattctctaaaatggacaagtattatgaaacggagggagtatt 24771904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 40783699 - 40783655
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  40783699 attattctctaaaatggacaagtattatgaaacggagggagtatt 40783655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 23045321 - 23045279
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  23045321 attattctctaaaatggacaagtattatgaaacggagggagta 23045279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 47037894 - 47037852
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||| ||||| |||||||||||||||||||||||||||    
T  47037894 attattctttaaaatagacaagtattatgaaacggagggagta 47037852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 46771873 - 46771910
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagg 47  Q
    |||||||||||||||| |||||||||||||||||||||    
T  46771873 attattcttcaaaatgaacaagtattatgaaacggagg 46771910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 321871 - 321903
Alignment:
Q  20 aaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||    
T  321871 aaaatggacaagtattatgaaacggagggagta 321903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 24772144 - 24772182
Alignment:
Q  14 ttcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  24772144 ttcttcaaaatggacatgtattttgaaacggagggagta 24772182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 51064995 - 51065033
Alignment:
Q  14 ttcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  51064995 ttctttaaaatggacaagtattgtgaaacggagggagta 51065033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 40562325 - 40562284
Alignment:
Q  13 attcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    ||||||||||||||||||||||||| ||||||| | ||||||    
T  40562325 attcttcaaaatggacaagtattataaaacggatgaagtatt 40562284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 9588708 - 9588668
Alignment:
Q  14 ttcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    |||| ||||||||||| ||||| ||||||||||||||||||    
T  9588708 ttctccaaaatggacatgtattttgaaacggagggagtatt 9588668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 27210997 - 27210961
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggag 46  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  27210997 attattcttaaaaatggacaaatattatgaaacggag 27210961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 44227886 - 44227846
Alignment:
Q  14 ttcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    |||| ||||||||||| ||||| ||||||||||||||||||    
T  44227886 ttctccaaaatggacatgtattttgaaacggagggagtatt 44227846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 15064737 - 15064693
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  15064737 attattctccaaaatggacaagtattatgaaacggagggagtatt 15064693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 17942678 - 17942721
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtat 53  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  17942678 attattctccaaaatggacaagtattatgaaacggagggagtat 17942721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 1605813 - 1605857
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  1605813 attattctctaaaatggacaagtattatgaaacggagggagtatt 1605857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 8626717 - 8626761
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  8626717 attattctctaaaatggacaagtattatgaaacggagggagtatt 8626761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 7761535 - 7761577
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  7761535 attattctctaaaatggacaagtattatgaaacggagggagta 7761577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 29260427 - 29260469
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  29260427 attattctctaaaatggacaagtattatgaaacggagggagta 29260469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 4129671 - 4129703
Alignment:
Q  20 aaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||    
T  4129671 aaaatggacaagtattatgaaacggagggagta 4129703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 13757442 - 13757485
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtat 53  Q
    ||||||||  |||||||||||||||||||||||||| |||||||    
T  13757442 attattctctaaaatggacaagtattatgaaacggatggagtat 13757485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 8626520 - 8626482
Alignment:
Q  14 ttcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  8626520 ttcttcaaaatggacatgtattttgaaacggagggagta 8626482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 31559780 - 31559738
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||  |||||||| ||||||||||||||||||||||||    
T  31559780 attattctctaaaatggagaagtattatgaaacggagggagta 31559738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 18355910 - 18355868
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  18355910 attattcttcaaaatggacaagtattgtgaaacggagggagta 18355868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 37293475 - 37293435
Alignment:
Q  14 ttcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  37293475 ttcttcaaaatggacaagtattgtgaaacggagggagtatt 37293435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 19241710 - 19241667
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtat 53  Q
    ||||||||  ||||||||||||||||||||||||||||||||||    
T  19241710 attattctctaaaatggacaagtattatgaaacggagggagtat 19241667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 29375367 - 29375410
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtat 53  Q
    ||||||||  ||||||||||||||||||||||||||||||||||    
T  29375367 attattctctaaaatggacaagtattatgaaacggagggagtat 29375410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 36881515 - 36881558
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtat 53  Q
    ||||||||  ||||||||||||||||||||||||||||||||||    
T  36881515 attattctctaaaatggacaagtattatgaaacggagggagtat 36881558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 13365078 - 13365120
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  13365078 attattctctaaaatggacaagtattatgaaacggagggagta 13365120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 13703448 - 13703490
Alignment:
Q  11 ttattcttcaaaatggacaagtattatgaaacggagggagtat 53  Q
    |||||||||| |||||||||||||||||||||||| |||||||    
T  13703448 ttattcttcagaatggacaagtattatgaaacggatggagtat 13703490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 46694152 - 46694110
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  46694152 attattctctaaaatggacaagtattatgaaacggagggagta 46694110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 48820575 - 48820619
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    |||||| || |||||||||||||||||||||||||||| ||||||    
T  48820575 attattttttaaaatggacaagtattatgaaacggaggaagtatt 48820619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 23087973 - 23087930
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtat 53  Q
    ||||||||| ||||| |||||||||||||||||||||| |||||    
T  23087973 attattctttaaaatcgacaagtattatgaaacggaggaagtat 23087930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 52
Target Start/End: Complemental strand, 32835019 - 32834989
Alignment:
Q  22 aatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||    
T  32835019 aatggacaagtattatgaaacggagggagta 32834989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 12969782 - 12969740
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  12969782 attattctccaaaatggacaagtattatgaaacggagggagta 12969740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 40756953 - 40756911
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  40756953 attattctccaaaatggacaagtattatgaaacggagggagta 40756911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 23367024 - 23367068
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  23367024 attattctctaaaatggacaagtattatgaaacggagggagtatt 23367068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 22388180 - 22388137
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtat 53  Q
    ||||||||  ||||||||||||||||||||||||||||||||||    
T  22388180 attattctctaaaatggacaagtattatgaaacggagggagtat 22388137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 1102747 - 1102780
Alignment:
Q  21 aaatggacaagtattatgaaacggagggagtatt 54  Q
    ||||||||||||||||||||||||||||||||||    
T  1102747 aaatggacaagtattatgaaacggagggagtatt 1102780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 3519142 - 3519186
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    ||||||||  |||||||||||||||||||||||||||| ||||||    
T  3519142 attattctctaaaatggacaagtattatgaaacggaggaagtatt 3519186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 39938405 - 39938449
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    ||||||||  |||||||||||||||||| ||||||||||||||||    
T  39938405 attattctctaaaatggacaagtattataaaacggagggagtatt 39938449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 1646522 - 1646564
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||  |||||||||| ||||||||||||||||||||||    
T  1646522 attattctctaaaatggacaggtattatgaaacggagggagta 1646564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 37673784 - 37673743
Alignment:
Q  11 ttattcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||  |||||||||||||||||||||||||| ||||||    
T  37673784 ttattctctaaaatggacaagtattatgaaacggaaggagta 37673743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 3518946 - 3518906
Alignment:
Q  14 ttcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    |||| ||||||||||| ||||| ||||||||||||||||||    
T  3518946 ttctccaaaatggacatgtattttgaaacggagggagtatt 3518906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 11174265 - 11174220
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtattg 55  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  11174265 attattctttaaaatgaacaagtattatgaaacggagggagtattg 11174220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 11646367 - 11646322
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtattg 55  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||    
T  11646367 attattctctaaaatggacaagtattatgaaacggagggagtattg 11646322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 2539972 - 2539928
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||    
T  2539972 attattctttaaaatggacaagtattatgaaacggaaggagtatt 2539928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 30999566 - 30999522
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  30999566 attattctctaaaatggacaagtattatgaaacggagggagtatt 30999522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 43275441 - 43275397
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  43275441 attattctctaaaatggacaagtattatgaaacggagggagtatt 43275397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 36068315 - 36068358
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtat 53  Q
    ||||||||  ||||||||||||||||||||||||||||||||||    
T  36068315 attattctctaaaatggacaagtattatgaaacggagggagtat 36068358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 7147148 - 7147190
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  7147148 attattctctaaaatggacaagtattatgaaacggagggagta 7147190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 40058345 - 40058303
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  40058345 attattctctaaaatggacaagtattatgaaacggagggagta 40058303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 40918773 - 40918731
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  40918773 attattctctaaaatggacaagtattatgaaacggagggagta 40918731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 27035230 - 27035273
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtat 53  Q
    |||||||| ||||||| ||||||||||||||||||||| |||||    
T  27035230 attattctccaaaatgaacaagtattatgaaacggaggcagtat 27035273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 28562459 - 28562420
Alignment:
Q  14 ttcttcaaaatggacaagtattatgaaacggagggagtat 53  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  28562459 ttcttcaaaatggacaagtattttgaaacggaggaagtat 28562420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 28567957 - 28567918
Alignment:
Q  14 ttcttcaaaatggacaagtattatgaaacggagggagtat 53  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  28567957 ttcttcaaaatggacaagtattttgaaacggaggaagtat 28567918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 28575550 - 28575511
Alignment:
Q  14 ttcttcaaaatggacaagtattatgaaacggagggagtat 53  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  28575550 ttcttcaaaatggacaagtattttgaaacggaggaagtat 28575511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 37345609 - 37345571
Alignment:
Q  14 ttcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  37345609 ttcttcaaaatggacatgtattttgaaacggagggagta 37345571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 37345806 - 37345848
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||  |||||||||||||||||||||||||| ||||||    
T  37345806 attattctctaaaatggacaagtattatgaaacggaaggagta 37345848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 40486468 - 40486506
Alignment:
Q  14 ttcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  40486468 ttcttcaaaatggacatgtattttgaaacggagggagta 40486506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 28562659 - 28562700
Alignment:
Q  13 attcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    ||||||||||||||| ||||||| ||| ||||||||||||||    
T  28562659 attcttcaaaatggataagtattgtgagacggagggagtatt 28562700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 3585686 - 3585730
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    ||||||||  ||||| |||||||||||||||||||| ||||||||    
T  3585686 attattctctaaaatagacaagtattatgaaacggatggagtatt 3585730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 20249056 - 20249012
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    |||||||| |||||||||||||||||||||||||||| |||||||    
T  20249056 attattctccaaaatggacaagtattatgaaacggagtgagtatt 20249012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 25704886 - 25704930
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  25704886 attattctctaaaatggacaagtattatgaaacggagggagtatt 25704930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 44569072 - 44569116
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  44569072 attattctctaaaatggacaagtattatgaaacggagggagtatt 44569116  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 14261279 - 14261322
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtat 53  Q
    ||||||||  ||||||||||||||||||||||||||||||||||    
T  14261279 attattctctaaaatggacaagtattatgaaacggagggagtat 14261322  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 21310656 - 21310699
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtat 53  Q
    ||||||||  ||||||||||||||||||||||||||||||||||    
T  21310656 attattctctaaaatggacaagtattatgaaacggagggagtat 21310699  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 24706289 - 24706246
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtat 53  Q
    ||||||||  ||||||||||||||||||||||||||||||||||    
T  24706289 attattctctaaaatggacaagtattatgaaacggagggagtat 24706246  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 12071795 - 12071837
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  12071795 attattctctaaaatggacaagtattatgaaacggagggagta 12071837  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 22321310 - 22321264
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtattga 56  Q
    ||||||||  ||||| |||||||||||||||||||||||||||||||    
T  22321310 attattctctaaaatagacaagtattatgaaacggagggagtattga 22321264  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 21661577 - 21661537
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggag 50  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  21661577 attattctctaaaatggacaagtattatgaaacggagggag 21661537  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 21670341 - 21670301
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggag 50  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  21670341 attattctctaaaatggacaagtattatgaaacggagggag 21670301  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 39295421 - 39295455
Alignment:
Q  20 aaaatggacaagtattatgaaacggagggagtatt 54  Q
    |||||||||||||||||||||||||| ||||||||    
T  39295421 aaaatggacaagtattatgaaacggaaggagtatt 39295455  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 40122529 - 40122487
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||  ||||||||||||||||||||||||||| |||||    
T  40122529 attattctctaaaatggacaagtattatgaaacggagagagta 40122487  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 21064996 - 21065037
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagt 51  Q
    ||||||||  |||||| |||||||||||||||||||||||||    
T  21064996 attattctctaaaatgaacaagtattatgaaacggagggagt 21065037  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 27814046 - 27814089
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtat 53  Q
    ||||||||  ||||||||||||||||||||||||||||||||||    
T  27814046 attattctctaaaatggacaagtattatgaaacggagggagtat 27814089  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 40349196 - 40349239
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtat 53  Q
    ||||||||  ||||||||||||||||||||||||||||||||||    
T  40349196 attattctctaaaatggacaagtattatgaaacggagggagtat 40349239  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 36453166 - 36453122
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    ||||||||  ||||||||||||||||||||||||||| |||||||    
T  36453166 attattctctaaaatggacaagtattatgaaacggagagagtatt 36453122  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 25614395 - 25614352
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtat 53  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||    
T  25614395 attattctctaaaatggacaattattatgaaacggagggagtat 25614352  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 47110685 - 47110732
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagtattgaa 57  Q
    ||||||||  |||||| | |||||||||||||||||||||||||||||    
T  47110685 attattctctaaaatgaataagtattatgaaacggagggagtattgaa 47110732  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 25060148 - 25060188
Alignment:
Q  14 ttcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    |||| ||||||||||| ||||| ||||||||||||||||||    
T  25060148 ttctccaaaatggacatgtattttgaaacggagggagtatt 25060188  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 27813849 - 27813809
Alignment:
Q  14 ttcttcaaaatggacaagtattatgaaacggagggagtatt 54  Q
    |||| ||||||||||| ||||| ||||||||||||||||||    
T  27813849 ttctccaaaatggacatgtattttgaaacggagggagtatt 27813809  T

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Target: scaffold0054 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 45688 - 45730
Alignment:
Q  10 attattcttcaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  45688 attattctctaaaatggacaagtattatgaaacggagggagta 45730  T

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Target: scaffold1770 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 406 - 438
Alignment:
Q  20 aaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||    
T  406 aaaatggacaagtattatgaaacggagggagta 438  T

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