View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_high_117 (Length: 286)
Name: NF1137_high_117
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_high_117 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 43597621 - 43597835
Alignment:
| Q |
10 |
agatgaaggaacgaccccaaattaattttggtttgtgaaagaggtggtagatataaatcaaaacaaagttcaacaaccacttattctaaaaaggtaaatg |
109 |
Q |
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| T |
43597621 |
agatgaaggaacgaccccaagttaattttgggttgtgaaagaggtggtagatataaatcaaaacaaagttcaacaatcacttattctaataaggtaaatg |
43597720 |
T |
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| Q |
110 |
tttattcaaaatcggatcagtaccaaagagaatggatagttcatgttcggtgtgat----actcacaatcatgaattagcaaataccttagaaggtcatc |
205 |
Q |
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| T |
43597721 |
tttattcaaaatcggatcagtaccaaagagaatggatagttcatgttcagtgtgatactcactcacaatcatgaattagcaaataccttagaaggtcatc |
43597820 |
T |
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| Q |
206 |
cttatatgtgttgtt |
220 |
Q |
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||||||||||||||| |
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| T |
43597821 |
cttatatgtgttgtt |
43597835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 43597857 - 43597924
Alignment:
| Q |
216 |
ttgttaatgacatgacaaagtttcacatgccactaatattcatgtaagtgtgttagattatcgatctt |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43597857 |
ttgttaatgacatgacaaagtttcacatgccactaatattcatgtaagtgtgttagattatcgatctt |
43597924 |
T |
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