View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_high_128 (Length: 264)
Name: NF1137_high_128
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_high_128 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 35 - 247
Target Start/End: Original strand, 40489237 - 40489449
Alignment:
| Q |
35 |
accatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatggcttccttgtgatgttgacttgttctg |
134 |
Q |
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| T |
40489237 |
accatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatggcttccttgtgatgttgacttgttctg |
40489336 |
T |
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| Q |
135 |
tgaggcacttgtagagatagaaagtgctgaagatcatgatttgggttttgtgggttgcaattttccaattcttcacaaacacaactcatcagtttcacat |
234 |
Q |
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| T |
40489337 |
tgaggcacttgtagagatagaaagtgctgaagatcatgatttgggttttgtgggttgcaattttccaattgttcacaaacacaactcatcagtttcacat |
40489436 |
T |
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| Q |
235 |
tctccatattctt |
247 |
Q |
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||||||| ||||| |
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| T |
40489437 |
tctccattttctt |
40489449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 35 - 219
Target Start/End: Original strand, 40466255 - 40466439
Alignment:
| Q |
35 |
accatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatggcttccttgtgatgttgacttgttctg |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40466255 |
accatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatggcttccttgtgatgttgacttgttctg |
40466354 |
T |
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| Q |
135 |
tgaggcacttgtagagatagaaagtgctgaagatcatgatttgggttttgtgggttgcaattttccaattcttcacaaacacaac |
219 |
Q |
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| T |
40466355 |
tgaggcacttgtagagatagaaagtgctgaagatcatgatttgggttttgtgggttgcaattttccaattgttcacaaacacaac |
40466439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 155
Target Start/End: Original strand, 40472591 - 40472711
Alignment:
| Q |
35 |
accatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatggcttccttgtgatgttgacttgttctg |
134 |
Q |
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||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||| ||||| || || || |
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| T |
40472591 |
accatcctttgttcaaaactcttttggaagatgttgagaacgaatatggatatagaaacgatggtcctctatggtttccttgtgacgttgatttattttg |
40472690 |
T |
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| Q |
135 |
tgaggcacttgtagagataga |
155 |
Q |
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|||| ||||||||| ||||| |
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| T |
40472691 |
tgagatacttgtagatataga |
40472711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 40480377 - 40480456
Alignment:
| Q |
46 |
tttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatggcttccttgtgatgttga |
125 |
Q |
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| T |
40480377 |
tttaaaactcttttagaagatgttgacaatgaatatggatataaaagtgatggtcctctatggcttccttgtgacgttga |
40480456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 7624811 - 7624847
Alignment:
| Q |
40 |
cctttgtttaaaactcttttagaagatgttgagaatg |
76 |
Q |
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| T |
7624811 |
cctttgtttaaaactcttttaggagctgttgagaatg |
7624847 |
T |
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