View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_high_13 (Length: 677)

Name: NF1137_high_13
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_high_13
NF1137_high_13
[»] chr7 (25 HSPs)
chr7 (448-677)||(23618339-23618570)
chr7 (453-677)||(25842641-25842867)
chr7 (453-677)||(8254016-8254245)
chr7 (555-677)||(1981233-1981357)
chr7 (555-677)||(8629638-8629760)
chr7 (555-674)||(8304179-8304302)
chr7 (448-556)||(1981563-1981671)
chr7 (601-677)||(7307154-7307229)
chr7 (453-556)||(8303599-8303703)
chr7 (555-677)||(26565445-26565568)
chr7 (279-359)||(8254359-8254439)
chr7 (602-677)||(17809024-17809100)
chr7 (280-359)||(25842981-25843061)
chr7 (608-674)||(30294408-30294475)
chr7 (607-677)||(4574878-4574949)
chr7 (296-358)||(8303433-8303495)
chr7 (555-653)||(21157605-21157703)
chr7 (591-675)||(5058673-5058759)
chr7 (280-359)||(23618669-23618749)
chr7 (610-675)||(7730258-7730324)
chr7 (610-675)||(17811512-17811578)
chr7 (610-674)||(4247521-4247585)
chr7 (276-357)||(26281361-26281442)
chr7 (630-677)||(26340282-26340330)
chr7 (591-675)||(44944744-44944830)
[»] chr1 (18 HSPs)
chr1 (448-674)||(17197441-17197669)
chr1 (559-677)||(12002769-12002890)
chr1 (275-359)||(4527-4611)
chr1 (280-359)||(17197747-17197825)
chr1 (448-556)||(12003014-12003122)
chr1 (622-674)||(8773432-8773484)
chr1 (610-673)||(16434674-16434739)
chr1 (555-623)||(8773067-8773138)
chr1 (555-645)||(24117603-24117694)
chr1 (555-677)||(18891491-18891615)
chr1 (555-675)||(17055818-17055938)
chr1 (555-599)||(22789307-22789352)
chr1 (454-549)||(8772859-8772956)
chr1 (295-359)||(8772719-8772783)
chr1 (602-653)||(16446679-16446731)
chr1 (623-677)||(22789348-22789402)
chr1 (309-359)||(27502252-27502302)
chr1 (591-675)||(42179963-42180050)
[»] chr2 (32 HSPs)
chr2 (453-677)||(34577884-34578108)
chr2 (453-677)||(20034132-20034357)
chr2 (453-677)||(27524006-27524232)
chr2 (498-673)||(7301825-7302002)
chr2 (555-677)||(974432-974557)
chr2 (555-677)||(41002120-41002244)
chr2 (555-677)||(21869231-21869356)
chr2 (448-552)||(21869672-21869777)
chr2 (555-674)||(27406899-27407020)
chr2 (556-677)||(26251621-26251748)
chr2 (610-677)||(13502570-13502638)
chr2 (279-358)||(20034452-20034531)
chr2 (281-359)||(34577702-34577780)
chr2 (571-677)||(34841705-34841813)
chr2 (559-675)||(24473931-24474051)
chr2 (448-552)||(41001916-41002021)
chr2 (555-675)||(25539044-25539166)
chr2 (555-673)||(19245691-19245812)
chr2 (279-359)||(974190-974270)
chr2 (602-677)||(19519530-19519606)
chr2 (279-359)||(27524336-27524416)
chr2 (571-677)||(16766910-16767017)
chr2 (610-674)||(31023466-31023531)
chr2 (555-623)||(27749713-27749784)
chr2 (555-677)||(19492040-19492165)
chr2 (300-359)||(41001770-41001829)
chr2 (555-666)||(5395430-5395544)
chr2 (630-677)||(27749419-27749466)
chr2 (601-677)||(1690625-1690701)
chr2 (609-677)||(8428385-8428454)
chr2 (591-674)||(35565857-35565939)
chr2 (319-359)||(21869875-21869915)
[»] chr3 (34 HSPs)
chr3 (448-677)||(22970796-22971028)
chr3 (448-677)||(18013981-18014210)
chr3 (448-677)||(19348542-19348772)
chr3 (564-677)||(8592309-8592425)
chr3 (566-676)||(9169780-9169891)
chr3 (455-556)||(8566456-8566558)
chr3 (448-561)||(3041267-3041380)
chr3 (448-556)||(21554111-21554220)
chr3 (602-677)||(21553802-21553881)
chr3 (602-674)||(10591789-10591861)
chr3 (610-677)||(3041375-3041442)
chr3 (555-620)||(8566180-8566247)
chr3 (277-359)||(18013811-18013893)
chr3 (451-550)||(20767317-20767418)
chr3 (606-677)||(8560367-8560437)
chr3 (277-359)||(19348371-19348453)
chr3 (555-677)||(27676545-27676668)
chr3 (608-674)||(6861039-6861106)
chr3 (280-359)||(21554309-21554389)
chr3 (277-359)||(3041091-3041169)
chr3 (608-653)||(15806305-15806350)
chr3 (615-677)||(6136466-6136529)
chr3 (604-666)||(23649385-23649448)
chr3 (313-359)||(22970651-22970697)
chr3 (610-675)||(25870221-25870286)
chr3 (591-675)||(28745920-28746006)
chr3 (612-675)||(39428069-39428133)
chr3 (601-675)||(8156028-8156103)
chr3 (615-677)||(13286113-13286176)
chr3 (642-677)||(27090633-27090668)
chr3 (608-647)||(28135924-28135963)
chr3 (591-674)||(42696991-42697077)
chr3 (610-675)||(20756187-20756252)
chr3 (602-642)||(27055266-27055306)
[»] chr8 (20 HSPs)
chr8 (448-675)||(16752012-16752240)
chr8 (555-677)||(40541730-40541855)
chr8 (612-677)||(2040273-2040338)
chr8 (448-529)||(2040178-2040261)
chr8 (555-677)||(26575020-26575146)
chr8 (600-675)||(15761257-15761333)
chr8 (279-359)||(2039989-2040069)
chr8 (279-353)||(16751830-16751904)
chr8 (610-677)||(30240267-30240335)
chr8 (558-673)||(1018082-1018199)
chr8 (278-357)||(40542214-40542294)
chr8 (486-556)||(40542049-40542120)
chr8 (608-677)||(8582205-8582275)
chr8 (609-677)||(26879737-26879807)
chr8 (610-673)||(6810986-6811048)
chr8 (601-677)||(29384209-29384290)
chr8 (601-675)||(11879756-11879830)
chr8 (601-675)||(11897172-11897246)
chr8 (610-668)||(45403194-45403253)
chr8 (591-675)||(23142319-23142404)
[»] scaffold0027 (2 HSPs)
scaffold0027 (498-677)||(133025-133206)
scaffold0027 (279-354)||(133313-133388)
[»] scaffold0182 (2 HSPs)
scaffold0182 (448-674)||(24370-24602)
scaffold0182 (278-359)||(24190-24271)
[»] chr4 (29 HSPs)
chr4 (555-677)||(55476083-55476207)
chr4 (558-674)||(18403639-18403757)
chr4 (448-553)||(8409349-8409455)
chr4 (591-674)||(8409725-8409810)
chr4 (555-675)||(8011035-8011157)
chr4 (601-662)||(8020714-8020775)
chr4 (601-677)||(24719730-24719807)
chr4 (280-359)||(55475585-55475664)
chr4 (555-677)||(4156961-4157084)
chr4 (602-675)||(6346854-6346928)
chr4 (555-677)||(7044871-7044995)
chr4 (555-673)||(9149624-9149744)
chr4 (279-359)||(8409179-8409259)
chr4 (602-675)||(8367344-8367419)
chr4 (591-677)||(7045085-7045174)
chr4 (555-644)||(8743708-8743800)
chr4 (555-674)||(20812635-20812759)
chr4 (603-647)||(10394768-10394812)
chr4 (591-675)||(17466223-17466309)
chr4 (555-627)||(7825158-7825231)
chr4 (610-675)||(5375829-5375895)
chr4 (610-673)||(46664210-46664269)
chr4 (555-645)||(18459546-18459637)
chr4 (591-675)||(36120968-36121053)
chr4 (603-643)||(5846050-5846090)
chr4 (603-674)||(5884193-5884265)
chr4 (591-675)||(9911310-9911396)
chr4 (612-675)||(10143066-10143130)
chr4 (601-653)||(27527953-27528005)
[»] chr5 (23 HSPs)
chr5 (555-675)||(41427513-41427636)
chr5 (575-677)||(15052001-15052101)
chr5 (555-654)||(19377707-19377809)
chr5 (555-650)||(187809-187906)
chr5 (555-677)||(22984711-22984836)
chr5 (448-524)||(15052101-15052177)
chr5 (465-556)||(41427311-41427403)
chr5 (555-677)||(15446305-15446431)
chr5 (555-673)||(24648125-24648245)
chr5 (448-550)||(19377234-19377337)
chr5 (608-677)||(43005756-43005826)
chr5 (601-675)||(9996882-9996957)
chr5 (296-359)||(41427100-41427163)
chr5 (614-675)||(19579111-19579173)
chr5 (610-675)||(20321107-20321173)
chr5 (453-549)||(22984928-22985024)
chr5 (296-355)||(4289827-4289886)
chr5 (300-359)||(19377076-19377135)
chr5 (591-647)||(26021464-26021522)
chr5 (601-661)||(13348812-13348874)
chr5 (610-675)||(18843880-18843945)
chr5 (591-675)||(23172327-23172413)
chr5 (601-675)||(41688565-41688638)
[»] chr6 (21 HSPs)
chr6 (554-677)||(27890479-27890605)
chr6 (556-677)||(31108252-31108374)
chr6 (448-556)||(27890301-27890410)
chr6 (555-677)||(31407402-31407528)
chr6 (555-674)||(33593063-33593186)
chr6 (555-677)||(18490536-18490660)
chr6 (568-666)||(20399994-20400096)
chr6 (555-677)||(20432503-20432628)
chr6 (555-673)||(7621882-7622003)
chr6 (569-675)||(5422564-5422665)
chr6 (603-673)||(8275434-8275503)
chr6 (608-677)||(4841726-4841796)
chr6 (602-677)||(4596764-4596843)
chr6 (591-675)||(23897955-23898041)
chr6 (290-358)||(27890143-27890211)
chr6 (601-675)||(26053195-26053269)
chr6 (601-675)||(26073248-26073322)
chr6 (591-642)||(645417-645470)
chr6 (630-675)||(3573799-3573845)
chr6 (610-675)||(10508916-10508982)
chr6 (610-675)||(7918249-7918312)
[»] scaffold1178 (1 HSPs)
scaffold1178 (555-677)||(429-554)
[»] scaffold0684 (1 HSPs)
scaffold0684 (555-675)||(5124-5246)
[»] scaffold0526 (3 HSPs)
scaffold0526 (563-677)||(8260-8375)
scaffold0526 (451-556)||(7909-8015)
scaffold0526 (310-359)||(7770-7819)
[»] scaffold0163 (1 HSPs)
scaffold0163 (555-675)||(2872-2994)
[»] scaffold0017 (4 HSPs)
scaffold0017 (556-677)||(38436-38565)
scaffold0017 (454-556)||(128792-128895)
scaffold0017 (297-359)||(129010-129072)
scaffold0017 (555-591)||(128674-128710)
[»] scaffold0061 (5 HSPs)
scaffold0061 (448-556)||(1739-1848)
scaffold0061 (448-556)||(7250-7359)
scaffold0061 (601-677)||(76218-76299)
scaffold0061 (297-359)||(1957-2019)
scaffold0061 (297-359)||(7468-7530)
[»] scaffold0001 (1 HSPs)
scaffold0001 (555-674)||(142725-142845)
[»] scaffold0259 (1 HSPs)
scaffold0259 (602-677)||(18540-18616)
[»] scaffold0079 (3 HSPs)
scaffold0079 (630-677)||(14836-14883)
scaffold0079 (448-518)||(14927-14997)
scaffold0079 (279-359)||(15096-15176)
[»] scaffold0603 (1 HSPs)
scaffold0603 (591-675)||(8858-8945)
[»] scaffold2084 (1 HSPs)
scaffold2084 (630-677)||(1-48)
[»] scaffold0186 (1 HSPs)
scaffold0186 (591-675)||(8587-8671)
[»] scaffold0048 (1 HSPs)
scaffold0048 (617-677)||(48559-48620)
[»] scaffold0042 (1 HSPs)
scaffold0042 (614-677)||(93602-93665)
[»] scaffold0016 (1 HSPs)
scaffold0016 (616-675)||(56324-56384)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 1e-92; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 448 - 677
Target Start/End: Complemental strand, 23618570 - 23618339
Alignment:
Q  448 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcact 547  Q
    |||| |||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||| ||||||||||||| ||||| |||| ||||||    
T  23618570 ataagggtcaatttttgacccggttcgtaaattgatccgatttgagtccatgacccgttctataaataaccaaaaggccaaaatttttcattccttcact 23618471  T
Q  548 tcccccacatttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttgg 645  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||| |||||||||| ||||||||||||||||    
T  23618470 tcccccacatttatgtatatgtattttgtagactttgaactttagtcatttatgactatatgcaatttataatatatatttaacattatttttgttttgg 23618371  T
Q  646 tagaatcctcgattttgattgcgattttacga 677  Q
    |||||||||||||||||||| |||||||||||    
T  23618370 tagaatcctcgattttgattacgattttacga 23618339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 453 - 677
Target Start/End: Complemental strand, 25842867 - 25842641
Alignment:
Q  453 ggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcacttcccc 552  Q
    ||||||||||||||  |||||||||||||||| |||||||||||||||||| |||||||||||||  ||||||||||   ||| |||| |||||||||||    
T  25842867 ggtcaatttttgacaaggttcgtaaattgacccgatttgaatccatgacccattctataaatacctgaaaggccaaaaaatttcattccttcacttcccc 25842768  T
Q  553 cacatttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaa 650  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25842767 aacatttatgtgtatgtattttgtggactttgaactttagtcatttatgactatatgcaatttataacatatatttaacattatttttgttttggtagaa 25842668  T
Q  651 tcctcgattttgattgcgattttacga 677  Q
    |||||||||||||||||||||||||||    
T  25842667 tcctcgattttgattgcgattttacga 25842641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 453 - 677
Target Start/End: Complemental strand, 8254245 - 8254016
Alignment:
Q  453 ggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcacttcccc 552  Q
    ||||||||||||||| ||||| ||||||||||  ||||||||||||||||||||||||||||||||||||| |||||   ||| |||| |||||||||||    
T  8254245 ggtcaatttttgaccaggttcataaattgacccaatttgaatccatgacccgttctataaatacccaaaagaccaaaaaatttcattccttcacttcccc 8254146  T
Q  553 cacatttatgtatatgtattttgtggactttgaactttagtcatttat-----ctatatgcaatttataacatatatttaaaattatttttgttttggta 647  Q
    |||||||||| |||||||||||||  ||||||||||||||||||||||     |||||||||||||||||||||||||||| ||||||||||||||||||    
T  8254145 cacatttatgcatatgtattttgttcactttgaactttagtcatttatgatgactatatgcaatttataacatatatttaacattatttttgttttggta 8254046  T
Q  648 gaatcctcgattttgattgcgattttacga 677  Q
    ||||||||||||||||||||||||||||||    
T  8254045 gaatcctcgattttgattgcgattttacga 8254016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 555 - 677
Target Start/End: Complemental strand, 1981357 - 1981233
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 652  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||  ||||||||||||||| |||||||    
T  1981357 catttatgtatatgtattttgtggactttgaactttagtcatttatgactatatgcaatttataacatatatttagcattatttttgttttgatagaatc 1981258  T
Q  653 ctcgattttgattgcgattttacga 677  Q
    ||||||||||||||| |||||||||    
T  1981257 ctcgattttgattgcaattttacga 1981233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 555 - 677
Target Start/End: Complemental strand, 8629760 - 8629638
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttatctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcct 654  Q
    |||||||||||||||||||||||||||||||| || ||  ||||||   ||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  8629760 catttatgtatatgtattttgtggactttgaatttaagatatttatgactatgcaatttataacatatatttagcattatttttgttttggtagaatcct 8629661  T
Q  655 cgattttgattgcgattttacga 677  Q
    || ||||||||||||||||||||    
T  8629660 cggttttgattgcgattttacga 8629638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 555 - 674
Target Start/End: Original strand, 8304179 - 8304302
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatattt--aaaattatttttgttttggtagaa 650  Q
    ||||||| |||||| ||||| ||||||||||||||||| |||||||  ||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  8304179 catttatatatatgcattttttggactttgaactttagacatttatgactatatgcaatttataacatatatttttaaaattatttttgttttggtagaa 8304278  T
Q  651 tcctcgattttgattgcgatttta 674  Q
    ||||||||||||||||| ||||||    
T  8304279 tcctcgattttgattgcaatttta 8304302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 448 - 556
Target Start/End: Complemental strand, 1981671 - 1981563
Alignment:
Q  448 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcact 547  Q
    |||| ||||||||||||| ||||||| |||||||||| ||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||    
T  1981671 ataagggtcaatttttgatccggttcataaattgacccgatttgaatccatgaccggttcaataaatacccaaaaggccaaaattttttattctttcact 1981572  T
Q  548 tcccccaca 556  Q
    |||||||||    
T  1981571 tcccccaca 1981563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 601 - 677
Target Start/End: Original strand, 7307154 - 7307229
Alignment:
Q  601 ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattttgattgcgattttacga 677  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7307154 ctatatgcaatttata-catatatttaacattatttttgttttggtagaatcttcgattttgattgcgattttacga 7307229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 453 - 556
Target Start/End: Original strand, 8303599 - 8303703
Alignment:
Q  453 ggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccg-ttctataaatacccaaaaggccaaacttttttattctttcacttccc 551  Q
    |||||||||||||||| |||| ||||||||||  ||||||||||| |||||  ||||||||||||||||||||||| | | ||| |||||||||||||||    
T  8303599 ggtcaatttttgacccagttcataaattgacccaatttgaatccacgacccaattctataaatacccaaaaggccatattgtttcattctttcacttccc 8303698  T
Q  552 ccaca 556  Q
    |||||    
T  8303699 ccaca 8303703  T

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Target: chr7; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 555 - 677
Target Start/End: Complemental strand, 26565568 - 26565445
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 652  Q
    |||||||||||| |||||||||||||||| ||| | ||||||||||  |||||| || ||||||||||||| |||| |||||||||||||||||| ||||    
T  26565568 catttatgtataagtattttgtggactttaaac-tgagtcatttatgactatatacagtttataacatata-ttaacattatttttgttttggtaaaatc 26565471  T
Q  653 c-tcgattttgattgcgattttacga 677  Q
    | || ||||||||||| |||||||||    
T  26565470 catcaattttgattgcaattttacga 26565445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 279 - 359
Target Start/End: Complemental strand, 8254439 - 8254359
Alignment:
Q  279 cattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    ||||||||| ||||| ||||||||||||  ||||||||| |||||||||||||||||| |||||||||||||||| |||||    
T  8254439 cattgttatcaaaaacccgacttaagtctcaaaatcctggtttttgcgactttgcgtagcttcaacgactcaaattcatag 8254359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 602 - 677
Target Start/End: Complemental strand, 17809100 - 17809024
Alignment:
Q  602 tatatgcaatttataacatatatttaaaattatttttgttttggtagaatc-ctcgattttgattgcgattttacga 677  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||  |  |||||||||||||||||||||    
T  17809100 tatatgcaatttataacatatatttagcattatttttgttttggtagaatctatgaattttgattgcgattttacga 17809024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 280 - 359
Target Start/End: Complemental strand, 25843061 - 25842981
Alignment:
Q  280 attgttataaaaaatccga-cttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    |||||||||||||| || | ||||||||  ||||||||  |||||||||||||| ||| ||||||||||||||||||||||    
T  25843061 attgttataaaaaaacccaacttaagtctcaaaatcctagtttttgcgactttgtgtagcttcaacgactcaaatccatag 25842981  T

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Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 608 - 674
Target Start/End: Original strand, 30294408 - 30294475
Alignment:
Q  608 caatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgatttta 674  Q
    ||||||||||||||||||||| ||||| |||||||||||| ||||| |||| |||||||| |||||||    
T  30294408 caatttataacatatatttaacattatctttgttttggtaaaatccatcgagtttgattgtgatttta 30294475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 607 - 677
Target Start/End: Original strand, 4574878 - 4574949
Alignment:
Q  607 gcaatttataacatatatttaaaattatttttgttttggtagaatc-ctcgattttgattgcgattttacga 677  Q
    ||||||||||||||||||| |  ||||||||| |||||||| ||||  |||||||||| |||||||||||||    
T  4574878 gcaatttataacatatattaagcattatttttattttggtaaaatctatcgattttgactgcgattttacga 4574949  T

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Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 296 - 358
Target Start/End: Original strand, 8303433 - 8303495
Alignment:
Q  296 cgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccata 358  Q
    |||||||||||  ||||| | | |||||||||||||||||| |||||||||||||||| ||||    
T  8303433 cgacttaagtctcaaaattcaggtttttgcgactttgcgtagcttcaacgactcaaattcata 8303495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 555 - 653
Target Start/End: Complemental strand, 21157703 - 21157605
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttatc--tatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 652  Q
    |||||||||||| ||||||||| |||||| |||   |||||||||    ||||| | ||||||||||||||||||  |||| ||||||||||||||||||    
T  21157703 catttatgtataagtattttgtagactttaaacg--agtcatttacgattatataccatttataacatatatttagcattacttttgttttggtagaatc 21157606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 675
Target Start/End: Original strand, 5058673 - 5058759
Alignment:
Q  591 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    ||||||||||  |||||| | ||||||||||||||||||  |||||| || |||||||| | ||| ||||||||||||||||||||||    
T  5058673 agtcatttatgactatataccatttataacatatatttagtattattatt-ttttggtaaagtccatcgattttgattgcgattttac 5058759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 280 - 359
Target Start/End: Complemental strand, 23618749 - 23618669
Alignment:
Q  280 attgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaactt-caacgactcaaatccatag 359  Q
    |||||||| ||||| | ||||||||||  ||||||||| ||| |||||||||| ||| ||| ||||||||| |||||||||    
T  23618749 attgttatcaaaaacctgacttaagtctcaaaatcctggtttatgcgactttgtgtagctttcaacgactcgaatccatag 23618669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 610 - 675
Target Start/End: Complemental strand, 7730324 - 7730258
Alignment:
Q  610 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    ||||||||||||||||||  ||| ||||| | |||||| ||||| || |||||||||||||||||||    
T  7730324 atttataacatatatttagtattttttttttgttggtaaaatccatcaattttgattgcgattttac 7730258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 610 - 675
Target Start/End: Original strand, 17811512 - 17811578
Alignment:
Q  610 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    |||||||| |||||||||| |||| | || ||| |||| ||||| ||||||||||||||||||||||    
T  17811512 atttataaaatatatttaatattaatattttttgggtaaaatccatcgattttgattgcgattttac 17811578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 610 - 674
Target Start/End: Original strand, 4247521 - 4247585
Alignment:
Q  610 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgatttta 674  Q
    |||| |||||||||||||  ||||||||| ||| |||| ||||| |||||||||||||||||||||    
T  4247521 atttgtaacatatatttagtattattttt-tttaggtaaaatccatcgattttgattgcgatttta 4247585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 357
Target Start/End: Complemental strand, 26281442 - 26281361
Alignment:
Q  276 aaccattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccat 357  Q
    |||||||||| | |||| |||||||||| ||||||||| | |  ||||||||||||    | ||||||||||||||||||||    
T  26281442 aaccattgttgtcaaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaacgactcaaatccat 26281361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 630 - 677
Target Start/End: Complemental strand, 26340330 - 26340282
Alignment:
Q  630 attatttttgttttggtagaa-tcctcgattttgattgcgattttacga 677  Q
    ||||||||||||||||||||| |  ||||||||||||| ||||||||||    
T  26340330 attatttttgttttggtagaatttatcgattttgattgtgattttacga 26340282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 591 - 675
Target Start/End: Complemental strand, 44944830 - 44944744
Alignment:
Q  591 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    ||||||||||  |||||| | ||||||||||||||||||  |||||| || |||||||| | ||  ||||||||||||||||||||||    
T  44944830 agtcatttatgactatataccatttataacatatatttagtattattatt-ttttggtaaagtctatcgattttgattgcgattttac 44944744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 170; Significance: 7e-91; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 448 - 674
Target Start/End: Complemental strand, 17197669 - 17197441
Alignment:
Q  448 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcact 547  Q
    |||| |||||||||||||||| ||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||  |||| |||||||||||    
T  17197669 ataagggtcaatttttgacccagtttgtaaattgacccgatttgaatccatgatccgttctataaatacccaaaaggccaaaagttttcattctttcact 17197570  T
Q  548 tcccccacatttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttgg 645  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||  ||||||||||||| |||||||||||||| ||||||||||||||||    
T  17197569 tcccccacatttatgtatatgtattttacggactttgaactttagtcatttatgactatatgcaatttgtaacatatatttaacattatttttgttttgg 17197470  T
Q  646 tagaatcctcgattttgattgcgatttta 674  Q
    |||||||||||||||||||||||||||||    
T  17197469 tagaatcctcgattttgattgcgatttta 17197441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 559 - 677
Target Start/End: Complemental strand, 12002890 - 12002769
Alignment:
Q  559 tatgtatatgtattttgtggactttgaacttta-gtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctc 655  Q
    |||||||||||||||||||||||||||| |||| |||||||||  |||||||||||||||||||||||||||  |||||||||||||||||||||||||     
T  12002890 tatgtatatgtattttgtggactttgaattttaagtcatttatgactatatgcaatttataacatatatttagcattatttttgttttggtagaatcctt 12002791  T
Q  656 gattttgattgcgattttacga 677  Q
    ||||||||||||||||||||||    
T  12002790 gattttgattgcgattttacga 12002769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 275 - 359
Target Start/End: Original strand, 4527 - 4611
Alignment:
Q  275 taaccattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    |||||||||||||||||||  |||||||||||  |||||  || |||||||||||||||||| |||||||||||||||| |||||    
T  4527 taaccattgttataaaaaacgcgacttaagtctcaaaattttggtttttgcgactttgcgtagcttcaacgactcaaattcatag 4611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 280 - 359
Target Start/End: Complemental strand, 17197825 - 17197747
Alignment:
Q  280 attgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    |||||||| ||||| ||||||||||||  ||||||||| ||| ||||||||||||| |||||||||||||||||||||||    
T  17197825 attgttatcaaaaacccgacttaagtctcaaaatcctggtttatgcgactttgcgt-acttcaacgactcaaatccatag 17197747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 448 - 556
Target Start/End: Complemental strand, 12003122 - 12003014
Alignment:
Q  448 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgaccc-gttctataaatacccaaaaggccaaacttttttattctttcac 546  Q
    |||| ||||||||||||||||| ||||||||||||||  |||| ||||||| |||| ||||||| |||| |||||||  |||| ||||| |||| |||||    
T  12003122 ataagggtcaatttttgacccgattcgtaaattgacccaatttaaatccataacccggttctatcaatatccaaaagcacaaa-tttttcattccttcac 12003024  T
Q  547 ttcccccaca 556  Q
    ||||||||||    
T  12003023 ttcccccaca 12003014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 622 - 674
Target Start/End: Original strand, 8773432 - 8773484
Alignment:
Q  622 tatttaaaattatttttgttttggtagaatcctcgattttgattgcgatttta 674  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  8773432 tatttaacattatttttgttttggtagaatcctcgatttttattgcgatttta 8773484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 610 - 673
Target Start/End: Original strand, 16434674 - 16434739
Alignment:
Q  610 atttataacatatatttaaaatta-tttttgttttggtagaatcc-tcgattttgattgcgatttt 673  Q
    ||||||||||||||||||  |||| |||||||||||||||||||| ||||||||||||||||||||    
T  16434674 atttataacatatatttatcattaatttttgttttggtagaatccatcgattttgattgcgatttt 16434739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 555 - 623
Target Start/End: Original strand, 8773067 - 8773138
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatata 623  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||||||  || ||||||||||||||||||||    
T  8773067 catttatgtatatttattttgcggactttgaactttaagtcatttatgactctatgcaatttataacatata 8773138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 555 - 645
Target Start/End: Original strand, 24117603 - 24117694
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttgg 645  Q
    ||||||||||||||||||||||| ||||| || ||| ||||||||||  |||||||||||||| |||  |||||||  ||||||||||||||||    
T  24117603 catttatgtatatgtattttgtgaactttaaattttgagtcatttatgactatatgcaatttaaaac--atatttagcattatttttgttttgg 24117694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 555 - 677
Target Start/End: Complemental strand, 18891615 - 18891491
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 652  Q
    |||||||||||| |||||||||||| ||| ||||  | ||||||||  |||| |  ||||||||| |||||||||| |||||||| ||||||||| |||     
T  18891615 catttatgtataagtattttgtggaatttaaactgaa-tcatttatgactatctataatttataatatatatttaacattattttcgttttggtaaaatt 18891517  T
Q  653 c-tcgattttgattgcgattttacga 677  Q
    | || ||||||||||||||| |||||    
T  18891516 catcaattttgattgcgattctacga 18891491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 555 - 675
Target Start/End: Complemental strand, 17055938 - 17055818
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 652  Q
    |||||||||||| |||||||||||||||| || || |||||| |||  ||||||  |||||||| |  |||||||  |||||||||||||||||| ||||    
T  17055938 catttatgtataagtattttgtggacttt-aaattgagtcatatatgactatatataatttatagc--atatttagcattatttttgttttggtaaaatc 17055842  T
Q  653 c-tcgattttgattgcgattttac 675  Q
    | || ||||||||||| |||||||    
T  17055841 catccattttgattgcaattttac 17055818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 555 - 599
Target Start/End: Original strand, 22789307 - 22789352
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaacttt-agtcattta 599  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  22789307 catttatgtatatgtattttgtggactttgaactttgagtcattta 22789352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 549
Target Start/End: Original strand, 8772859 - 8772956
Alignment:
Q  454 gtcaatttttgacccggttcgtaaattgaccggatttgaatccatga-cccgttctataaataccc-aaaaggccaaacttttttattctttcacttc 549  Q
    |||||||||||||||  ||||| |||||| |  |||||||||||||| || || |||||||||||| |||||||||||  | || |||||||||||||    
T  8772859 gtcaatttttgacccaattcgtcaattgatccaatttgaatccatgatccggtgctataaatacccaaaaaggccaaaaatattcattctttcacttc 8772956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 295 - 359
Target Start/End: Original strand, 8772719 - 8772783
Alignment:
Q  295 ccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    ||||||||| ||  ||||||| || ||||||||||||| ||| ||||||| ||||||||||||||    
T  8772719 ccgacttaaatcccaaaatccagaattttgcgactttgtgtagcttcaacaactcaaatccatag 8772783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 602 - 653
Target Start/End: Complemental strand, 16446731 - 16446679
Alignment:
Q  602 tatatgcaatttataacatatatttaaaattat-ttttgttttggtagaatcc 653  Q
    ||||||||||||||||||||||||||  ||||| ||||||||| |||||||||    
T  16446731 tatatgcaatttataacatatatttagtattatattttgtttttgtagaatcc 16446679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 623 - 677
Target Start/End: Original strand, 22789348 - 22789402
Alignment:
Q  623 atttaaaattatttttgttttggtagaatcctcgattttgattgcgattttacga 677  Q
    |||||| |||||||||||||||||||| || || || |||||||| |||||||||    
T  22789348 atttaacattatttttgttttggtagattcatccatgttgattgcaattttacga 22789402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 309 - 359
Target Start/End: Complemental strand, 27502302 - 27502252
Alignment:
Q  309 aaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    ||||||| ||||||||  ||||||  |||||||||||||||||||||||||    
T  27502302 aaaatccagatttttgtaactttgtttaacttcaacgactcaaatccatag 27502252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 591 - 675
Target Start/End: Complemental strand, 42180050 - 42179963
Alignment:
Q  591 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    ||||||||||  |||||| | ||||||||||||||| ||  ||||| ||| |||||||| ||||| ||||||||||||| | ||||||    
T  42180050 agtcatttatgactatataccatttataacatatatatagtattatattttttttggtaaaatccatcgattttgattgtggttttac 42179963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 169; Significance: 3e-90; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 453 - 677
Target Start/End: Original strand, 34577884 - 34578108
Alignment:
Q  453 ggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcacttcccc 552  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    || |||| |||||||||||    
T  34577884 ggtcaatttttgacatggttcgtaaattgacccgatttgaatccatgacccgttctataaatacccgaaaggccaaaaaaattcattcattcacttcccc 34577983  T
Q  553 cacatttatgtatatgtattttgtggactttgaactttagtcatttatctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 652  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34577984 cacatttatgtatatgtattttgtggactttgaactttagtcatttatgactatgcaatttataacatatatttaacattatttttgttttggtagaatc 34578083  T
Q  653 ctcgattttgattgcgattttacga 677  Q
    |||||||||||||||||||||||||    
T  34578084 ctcgattttgattgcgattttacga 34578108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 453 - 677
Target Start/End: Complemental strand, 20034357 - 20034132
Alignment:
Q  453 ggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcacttcccc 552  Q
    ||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||   |||  || ||||||||||||    
T  20034357 ggtcaatttttgacccggttcataaatttacccgatttgaatccatgacccgttctataaatacccaaaaggccaaaaaatttctttttttcacttcccc 20034258  T
Q  553 cacatttatgtatatgtattttgtggactttgaactttagtcatttatc--tatatgcaatttataacatatatttaaaattatttttgttttggtagaa 650  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||   ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20034257 cacatttatgta-atgtattttgtggattttgaactttagtcatttatgagtatatgcaatttataacatatatttaacattatttttgttttggtagaa 20034159  T
Q  651 tcctcgattttgattgcgattttacga 677  Q
    |||||||||||||||||||||||||||    
T  20034158 tcctcgattttgattgcgattttacga 20034132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 453 - 677
Target Start/End: Complemental strand, 27524232 - 27524006
Alignment:
Q  453 ggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcacttcccc 552  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||  |||| ||| ||||||||||||    
T  27524232 ggtcaatttttgagccggttcgtaaattgacccgatttgaatccatgacccgttctataaatacccaaaagggcaaaaattttcattatttcacttcccc 27524133  T
Q  553 cacatttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaa 650  Q
    ||||||| | ||||||||||||||||||||||||||||| ||||||||   |||||||||||||||| |||||||||| |||||||||||||||||||||    
T  27524132 cacatttgtctatatgtattttgtggactttgaactttaatcatttatgaatatatgcaatttataatatatatttaacattatttttgttttggtagaa 27524033  T
Q  651 tcctcgattttgattgcgattttacga 677  Q
     |||||||||||||||| |||||||||    
T  27524032 ccctcgattttgattgcaattttacga 27524006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 498 - 673
Target Start/End: Original strand, 7301825 - 7302002
Alignment:
Q  498 tgacccgttctataaatacccaaaaggccaaacttttttattctttcacttcccccacatttatgtatatgtattttgtggactttgaactttagtcatt 597  Q
    |||||||||||||||||||||||| |||||||   ||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  7301825 tgacccgttctataaatacccaaatggccaaaaaatttcattccttcacttcccccacgtttatgcatatgtattttgtggactttgaactttagtcatt 7301924  T
Q  598 tat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattttgattgcgatttt 673  Q
    |||  | |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  7301925 tatgaccatatgcaatttataacatatatttaacattatttttattttggtagaatcctcgattttgattgcgatttt 7302002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 555 - 677
Target Start/End: Original strand, 974432 - 974557
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaacttta-gtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 651  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  974432 catttatgtatatgtattttgtggactttgaactttaagtcatttatgactatatgcaatttataacatatatttaacattatttttgttttggtagaat 974531  T
Q  652 cctcgattttgattgcgattttacga 677  Q
    ||||||||||||||||||||||||||    
T  974532 cctcgattttgattgcgattttacga 974557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 555 - 677
Target Start/End: Original strand, 41002120 - 41002244
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 652  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  41002120 catttatgtatatgtattttgtggactttgaactttagtcatttatgactatatgcaatttataacatatatttagcattatttttgttttggtagaatc 41002219  T
Q  653 ctcgattttgattgcgattttacga 677  Q
    ||||||||||||| |||||||||||    
T  41002220 ctcgattttgattacgattttacga 41002244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 555 - 677
Target Start/End: Complemental strand, 21869356 - 21869231
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaacttta-gtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 651  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||  |||||||||||||||||||||||||||  || |||||||||||||||||||    
T  21869356 catttatgtatatgtattttgtggactttgaactttaagttatttatgactatatgcaatttataacatatatttagcataatttttgttttggtagaat 21869257  T
Q  652 cctcgattttgattgcgattttacga 677  Q
    | ||||||||||||| ||||||||||    
T  21869256 catcgattttgattgggattttacga 21869231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 448 - 552
Target Start/End: Complemental strand, 21869777 - 21869672
Alignment:
Q  448 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgaccc-gttctataaatacccaaaaggccaaacttttttattctttcac 546  Q
    |||| ||||||||||||||||||||||| ||||  || |||||||||||||||||| ||||||||||||||||||| |||||  ||||| ||||||||||    
T  21869777 ataagggtcaatttttgacccggttcgtcaattagcccgatttgaatccatgacccagttctataaatacccaaaatgccaatttttttcattctttcac 21869678  T
Q  547 ttcccc 552  Q
    ||||||    
T  21869677 ttcccc 21869672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 555 - 674
Target Start/End: Original strand, 27406899 - 27407020
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 652  Q
    ||||||||||||||||||||||||||||| ||| | ||||||||||  |||||| || ||||||| |||||||||  |||||||||||||||||  ||||    
T  27406899 catttatgtatatgtattttgtggactttaaac-tgagtcatttattactatatacagtttataatatatatttagcattatttttgttttggtgaaatc 27406997  T
Q  653 c-tcgattttgattgcgatttta 674  Q
    | || ||||||||||||||||||    
T  27406998 catcaattttgattgcgatttta 27407020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 556 - 677
Target Start/End: Original strand, 26251621 - 26251748
Alignment:
Q  556 atttatgtatatgtattttgtggactttgaacttt--agtcatttat--ctatatgcaatttataacatatatttaaaattatttttg-ttttggtagaa 650  Q
    |||||| |||| |||||||||||||||  ||||||  ||||||||||  |||||||||||||||||||||||||||  |||||||||| |||||||||||    
T  26251621 atttatttataggtattttgtggacttgaaacttttgagtcatttatgactatatgcaatttataacatatatttaccattatttttgattttggtagaa 26251720  T
Q  651 tc-ctcgattttgattgcgattttacga 677  Q
    ||   ||||||||||||| |||||||||    
T  26251721 tctaccgattttgattgcaattttacga 26251748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 610 - 677
Target Start/End: Complemental strand, 13502638 - 13502570
Alignment:
Q  610 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttacga 677  Q
    ||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  13502638 atttataacatatatttaatattatttttgttttggtaaaatccatcgattttgattgcgattttacga 13502570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 279 - 358
Target Start/End: Complemental strand, 20034531 - 20034452
Alignment:
Q  279 cattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccata 358  Q
    ||||||||| ||||| || |||||||||  ||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  20034531 cattgttatcaaaaacccaacttaagtctcaaaatcctggtttttgcgactttgcgtagcttcaacgactcaaatccata 20034452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 281 - 359
Target Start/End: Original strand, 34577702 - 34577780
Alignment:
Q  281 ttgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    ||||||| ||||| |||||||||||| |||||||||| |||||||||||||| ||| | ||||||||||||||||||||    
T  34577702 ttgttatcaaaaacccgacttaagtcttaaaatcctggtttttgcgactttgtgtagcatcaacgactcaaatccatag 34577780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 571 - 677
Target Start/End: Original strand, 34841705 - 34841813
Alignment:
Q  571 ttttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgc 667  Q
    ||||||||||||| ||||  ||| ||||||  |||||| ||||||||||||||||||||  ||||||||||||| | |||||||| ||||||||||||||    
T  34841705 ttttgtggactttaaactg-agttatttatgactatatacaatttataacatatatttattattatttttgtttggatagaatccatcgattttgattgc 34841803  T
Q  668 gattttacga 677  Q
    ||||||||||    
T  34841804 gattttacga 34841813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 559 - 675
Target Start/End: Original strand, 24473931 - 24474051
Alignment:
Q  559 tatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-t 654  Q
    |||||||| |||||||||||| ||| |||||| ||||||||||  |||||||||||||||| ||| ||||||  |||| |||||||||||||||||||      
T  24473931 tatgtataagtattttgtggaattttaacttttagtcatttataactatatgcaatttatatcatctatttatcattaattttgttttggtagaatccaa 24474030  T
Q  655 cgattttgattgcgattttac 675  Q
    ||||||| |||| ||||||||    
T  24474031 cgattttaattgtgattttac 24474051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 448 - 552
Target Start/End: Original strand, 41001916 - 41002021
Alignment:
Q  448 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccg-ttctataaatacccaaaaggccaaacttttttattctttcac 546  Q
    |||| ||||||||||||| | |||||||||||||||| |||||| |||||||||||| |||||||||||||| ||||| ||||    || ||||||||||    
T  41001916 ataagggtcaatttttgaacgggttcgtaaattgacccgatttgtatccatgacccgattctataaataccctaaaggtcaaaaaaattcattctttcac 41002015  T
Q  547 ttcccc 552  Q
    ||||||    
T  41002016 ttcccc 41002021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 555 - 675
Target Start/End: Complemental strand, 25539166 - 25539044
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 652  Q
    ||||||| |||| |||||||||||||||| ||||  ||||||||||  |||||| |||| |||||||||||||||  ||||||| |||||||||| ||||    
T  25539166 catttatttataagtattttgtggactttaaactg-agtcatttatgactatatacaatatataacatatatttagcattatttctgttttggtaaaatc 25539068  T
Q  653 -ctcgattttgattgcgattttac 675  Q
      |||||||||||||| |||||||    
T  25539067 tatcgattttgattgcaattttac 25539044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 555 - 673
Target Start/End: Original strand, 19245691 - 19245812
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 651  Q
    |||||||| | | |||||||||||||||| |||||| ||||||||||  ||| ||||||||| || ||||||||||| ||||||||| ||||||||||||    
T  19245691 catttatgcaaaagtattttgtggactttaaactttgagtcatttatgactacatgcaatttctatcatatatttaacattatttttattttggtagaat 19245790  T
Q  652 cc-tcgattttgattgcgatttt 673  Q
    || |||| ||||||| |||||||    
T  19245791 ccatcga-tttgattacgatttt 19245812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 279 - 359
Target Start/End: Original strand, 974190 - 974270
Alignment:
Q  279 cattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    ||||||||| |||||  ||||||||||| |||||||||| |||||||||||||| ||| |||||| ||||||||| |||||    
T  974190 cattgttatcaaaaacgcgacttaagtcctaaaatcctggtttttgcgactttgtgtagcttcaatgactcaaattcatag 974270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 602 - 677
Target Start/End: Original strand, 19519530 - 19519606
Alignment:
Q  602 tatatgcaatttataacatatatttaaaattatttttgttttggtagaatc-ctcgattttgattgcgattttacga 677  Q
    ||||||||||||||||||||||||||  |||||||| ||||| ||||||||  || |||||||||||||||||||||    
T  19519530 tatatgcaatttataacatatatttagcattattttggtttttgtagaatctatcaattttgattgcgattttacga 19519606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 279 - 359
Target Start/End: Complemental strand, 27524416 - 27524336
Alignment:
Q  279 cattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    ||||||||| ||||| ||||||||||||  ||||| ||| |||||||||||||||||| |||| |||||||||||| ||||    
T  27524416 cattgttatcaaaaacccgacttaagtctcaaaattctggtttttgcgactttgcgtagcttcgacgactcaaatctatag 27524336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 571 - 677
Target Start/End: Original strand, 16766910 - 16767017
Alignment:
Q  571 ttttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgc 667  Q
    ||||||||||||| ||||  ||||||||||  || ||| |||||||||||| |||||||  |||||||||||||||||| ||||| | ||||||||||||    
T  16766910 ttttgtggactttaaactg-agtcatttatgactgtatacaatttataacaaatatttagcattatttttgttttggta-aatcctttgattttgattgc 16767007  T
Q  668 gattttacga 677  Q
    ||||||||||    
T  16767008 gattttacga 16767017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 610 - 674
Target Start/End: Original strand, 31023466 - 31023531
Alignment:
Q  610 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgatttta 674  Q
    ||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||||| ||||||||    
T  31023466 atttataacatatatttaacattatttttattttggtaaaatccatcgattttgattacgatttta 31023531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 555 - 623
Target Start/End: Complemental strand, 27749784 - 27749713
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatata 623  Q
    ||||||||| |||||||||||| ||||||||||||| ||||||||||  ||| |||||||||||||||||||    
T  27749784 catttatgtgtatgtattttgtagactttgaactttgagtcatttatgactacatgcaatttataacatata 27749713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 555 - 677
Target Start/End: Original strand, 19492040 - 19492165
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatt-tttgttttggtagaat 651  Q
    |||||||||||| ||||| |||||||||| |||   ||| ||||||  |||||| ||||||||||||||||||||  |||||| ||| |||||||| |||    
T  19492040 catttatgtataagtattctgtggactttaaacag-agttatttatgactatatacaatttataacatatatttagcattattattttttttggtaaaat 19492138  T
Q  652 cc-tcgattttgattgcgattttacga 677  Q
    || |||||||||||| || ||||||||    
T  19492139 ccatcgattttgattacggttttacga 19492165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 300 - 359
Target Start/End: Original strand, 41001770 - 41001829
Alignment:
Q  300 ttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    |||||||  ||||||||| ||||||| |||||||||| ||||||||||||||||||||||    
T  41001770 ttaagtctcaaaatcctggtttttgcaactttgcgtagcttcaacgactcaaatccatag 41001829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 555 - 666
Target Start/End: Complemental strand, 5395544 - 5395430
Alignment:
Q  555 catttatgtatat-gtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 651  Q
    ||||||||||||  |||||| ||||||||| || ||  |||||||||  |||||| ||||||||||||||| || || |||||||||||||||||| |||    
T  5395544 catttatgtataaagtatttggtggactttaaa-ttgggtcatttatgactatatacaatttataacatattttgaacattatttttgttttggtaaaat 5395446  T
Q  652 c-ctcgattttgattg 666  Q
    |  |||||||||||||    
T  5395445 ctttcgattttgattg 5395430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 630 - 677
Target Start/End: Complemental strand, 27749466 - 27749419
Alignment:
Q  630 attatttttgttttggtagaatcctcgattttgattgcgattttacga 677  Q
    ||||||||||||||||||||||||||| |||| || | ||||||||||    
T  27749466 attatttttgttttggtagaatcctcgttttttatcgtgattttacga 27749419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 601 - 677
Target Start/End: Complemental strand, 1690701 - 1690625
Alignment:
Q  601 ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttacga 677  Q
    |||||| | |||||||| |||||||||| |||||| || |||||||| |||   ||||||||||||||||||||||||    
T  1690701 ctatataccatttataaaatatatttaatattattatt-ttttggtaaaatttatcgattttgattgcgattttacga 1690625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 609 - 677
Target Start/End: Original strand, 8428385 - 8428454
Alignment:
Q  609 aatttataacatatatttaaaattatttttgttttggtagaa-tcctcgattttgattgcgattttacga 677  Q
    ||||||||| ||||| |||  |||||||||||||||||| || || |||||||  |||||||||||||||    
T  8428385 aatttataatatatagttagcattatttttgttttggtataattcatcgatttgtattgcgattttacga 8428454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 591 - 674
Target Start/End: Complemental strand, 35565939 - 35565857
Alignment:
Q  591 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgatttta 674  Q
    ||||||||||  |||||| |||||||||||||||||||   | ||||||| |||||||| ||||| ||||||||||||| |||||||    
T  35565939 agtcatttatgactatatacaatttataacatatattt---agtattttt-ttttggtaaaatccatcgattttgattgtgatttta 35565857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 319 - 359
Target Start/End: Complemental strand, 21869915 - 21869875
Alignment:
Q  319 tttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    |||| ||||||||||||| ||||||||| ||||||||||||    
T  21869915 ttttggcgactttgcgtagcttcaacgattcaaatccatag 21869875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 166; Significance: 2e-88; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 448 - 677
Target Start/End: Original strand, 22970796 - 22971028
Alignment:
Q  448 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcact 547  Q
    |||| ||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    || |||||||||||    
T  22970796 ataagggtcaatttttgacctggttcgtaaattgacccgatttaaatccatgacccgttctataaatacccaaaaggccaaaaaaattcattctttcact 22970895  T
Q  548 tcccccacatttatgtatatgtattttgtggactttgaactttagtca-tttat--ctatatgcaatttataacatatatttaaaattatttttgttttg 644  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||| ||| |||||||||||||||    
T  22970896 tcccccacatttatgtatatgtattttgtggactttgaactttagtcattttatgactatatgcaatttataacatatatataacattatttttgttttg 22970995  T
Q  645 gtagaatcctcgattttgattgcgattttacga 677  Q
    ||||||||||||||||||||||| |||||||||    
T  22970996 gtagaatcctcgattttgattgcaattttacga 22971028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 448 - 677
Target Start/End: Original strand, 18013981 - 18014210
Alignment:
Q  448 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcact 547  Q
    |||||||||||||| |||||| ||| ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||  |||| ||||||||| |    
T  18013981 ataaaggtcaatttatgaccccgtttgtaaattgacctgatttaaatccatgacccattctataaatacccaaaaggccaaaaattttcattctttcaat 18014080  T
Q  548 tcccccacatttatgtatatgtattttgtggactttgaactttagtcatttatctatatgcaatttataacatatatttaaaattatttttgttttggta 647  Q
    || |||| |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||  ||||||||||||||| ||    
T  18014081 tctcccatatttatgtatatgtattttgtggactttgaactttagtcatttatgactatgcaatttataacatatatttagcattatttttgttttgata 18014180  T
Q  648 gaatcctcgattttgattgcgattttacga 677  Q
    ||||||||||||||||||||||||||||||    
T  18014181 gaatcctcgattttgattgcgattttacga 18014210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 448 - 677
Target Start/End: Original strand, 19348542 - 19348772
Alignment:
Q  448 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcact 547  Q
    ||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||  ||  ||||| ||||||||| |    
T  19348542 ataaaggtcaatttt-gacccggtttgtaaattgacccgatttgaatccatgacccattctataaatacccaaaaggaaaacatttttcattctttcaat 19348640  T
Q  548 tcccccacatttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttgg 645  Q
    || |||||||||||||||||||||| ||||||||||||| | |||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||    
T  19348641 tctcccacatttatgtatatgtattatgtggactttgaattatagtcatttatgactatatgcaatttataacatatatttaacattatttttgttttgg 19348740  T
Q  646 tagaatcctcgattttgattgcgattttacga 677  Q
    || |||||||||||||||||||||||||||||    
T  19348741 tataatcctcgattttgattgcgattttacga 19348772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 564 - 677
Target Start/End: Complemental strand, 8592425 - 8592309
Alignment:
Q  564 atatgtattttgtggactttgaacttta-gtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattt 660  Q
    ||||||||||||||||||| |||||||| |||||||||  |||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||    
T  8592425 atatgtattttgtggacttcgaactttaagtcatttatgactatatgcaatttataacatatatttatcattatttttgttttggtagaatccttgattt 8592326  T
Q  661 tgattgcgattttacga 677  Q
    |||||||||||||||||    
T  8592325 tgattgcgattttacga 8592309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 566 - 676
Target Start/End: Original strand, 9169780 - 9169891
Alignment:
Q  566 atgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattttga 663  Q
    |||||||||||| ||||||||||||| ||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9169780 atgtattttgtgaactttgaacttta-tcatttatgactatatgcaatttataacatatatttaacattatttttgttttggtagaatcctcgattttga 9169878  T
Q  664 ttgcgattttacg 676  Q
    |||| ||||||||    
T  9169879 ttgcaattttacg 9169891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 455 - 556
Target Start/End: Complemental strand, 8566558 - 8566456
Alignment:
Q  455 tcaatttttgacccggttcgtaaattgaccggatttgaatccatgaccc-gttctataaatacccaaaaggccaaacttttttattctttcacttccccc 553  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||| ||||| |||||||||||||||||    
T  8566558 tcaatttttgatccggttcgtaaattgacccgatttgaatccatgacccggttctataaatactcaaaaggccaaaatttttcattctttcacttccccc 8566459  T
Q  554 aca 556  Q
    |||    
T  8566458 aca 8566456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 448 - 561
Target Start/End: Original strand, 3041267 - 3041380
Alignment:
Q  448 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcact 547  Q
    |||| ||||||||||||||  |||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||    || | |||||||||    
T  3041267 ataagggtcaatttttgactaggttcgtaaattgatccgatttgaatccatgactcgttctataaatacccaaaaggccaaaaaaattcactctttcact 3041366  T
Q  548 tcccccacatttat 561  Q
    ||||||||||||||    
T  3041367 tcccccacatttat 3041380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 448 - 556
Target Start/End: Complemental strand, 21554220 - 21554111
Alignment:
Q  448 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccg-ttctataaatacccaaaaggccaaacttttttattctttcac 546  Q
    |||| |||||||||||||||| ||||||||||||| | ||||||||||||||||| | |||||||||||||||||| ||||||   ||| ||||||||||    
T  21554220 ataagggtcaatttttgacccagttcgtaaattgatctgatttgaatccatgacctgattctataaatacccaaaatgccaaaaaatttcattctttcac 21554121  T
Q  547 ttcccccaca 556  Q
    ||||||||||    
T  21554120 ttcccccaca 21554111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 602 - 677
Target Start/End: Complemental strand, 21553881 - 21553802
Alignment:
Q  602 tatatgcaatttataacatatattta----aaattatttttgttttggtagaatcctcgattttgattgcgattttacga 677  Q
    ||||||||||||||||||||||||||    | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21553881 tatatgcaatttataacatatatttagtcaacattatttttgttttggtagaatcctcgattttgattgcgattttacga 21553802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 602 - 674
Target Start/End: Original strand, 10591789 - 10591861
Alignment:
Q  602 tatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattttgattgcgatttta 674  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||| ||||||    
T  10591789 tatatgcaatttataacatatatttagcattatttttgttttggtagaatcctcaattttgattgcaatttta 10591861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 610 - 677
Target Start/End: Original strand, 3041375 - 3041442
Alignment:
Q  610 atttataacatatatttaaaattatttttgttttggtagaatcctcgattttgattgcgattttacga 677  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  3041375 atttatagcatatatttaacattatttttgttttggtagaatcctcgattttaattgcgattttacga 3041442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 555 - 620
Target Start/End: Complemental strand, 8566247 - 8566180
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacat 620  Q
    |||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||    
T  8566247 catttatgtatatgtattttgtggacttcgaactttagtcatttatgactatatgcaatttataacat 8566180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 277 - 359
Target Start/End: Original strand, 18013811 - 18013893
Alignment:
Q  277 accattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    |||||||||||||||||  ||||||||| |  ||||||||| |||||||||||||||||| ||||||| ||||||||||||||    
T  18013811 accattgttataaaaaacgcgacttaaggcccaaaatcctggtttttgcgactttgcgtagcttcaactactcaaatccatag 18013893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 451 - 550
Target Start/End: Complemental strand, 20767418 - 20767317
Alignment:
Q  451 aaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacc-cgttctataaatacccaaaaggccaaactttttt-attctttcactt 548  Q
    ||||||||||||| ||| ||||| |||||| ||| |||||||||||||||||  |||||||||||| ||||||||||||  |||||| ||||||||||||    
T  20767418 aaggtcaattttttaccaggttcataaattaacccgatttgaatccatgacctagttctataaataaccaaaaggccaattttttttcattctttcactt 20767319  T
Q  549 cc 550  Q
    ||    
T  20767318 cc 20767317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 606 - 677
Target Start/End: Complemental strand, 8560437 - 8560367
Alignment:
Q  606 tgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattttgattgcgattttacga 677  Q
    ||||||||||||||||||||||  ||||||||  ||||||||||||| ||||||||||||||||||||||||    
T  8560437 tgcaatttataacatatatttagcattatttta-ttttggtagaatcatcgattttgattgcgattttacga 8560367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 277 - 359
Target Start/End: Original strand, 19348371 - 19348453
Alignment:
Q  277 accattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    ||||||||||| |||||  |||||||||||  ||||||||| ||||||||| |||| ||| ||||||||||||||||||||||    
T  19348371 accattgttatcaaaaacgcgacttaagtcccaaaatcctggtttttgcgattttgtgtagcttcaacgactcaaatccatag 19348453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 555 - 677
Target Start/End: Original strand, 27676545 - 27676668
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 652  Q
    |||||||||||| |||||||||||| ||| |||   ||||||||||  ||||||  |||||||||||||||||||| ||| |||||||||||||| ||||    
T  27676545 catttatgtataagtattttgtgga-tttaaaccg-agtcatttatgactatatataatttataacatatatttaacattgtttttgttttggtaaaatc 27676642  T
Q  653 c-tcgattttgattgcgattttacga 677  Q
    | | ||||||||||| ||||||||||    
T  27676643 cattgattttgattgtgattttacga 27676668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 608 - 674
Target Start/End: Complemental strand, 6861106 - 6861039
Alignment:
Q  608 caatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgatttta 674  Q
    |||||||||||||||| |||   ||||||||||||||||||||||| |||||||||||||||||||||    
T  6861106 caatttataacatatagttagctttatttttgttttggtagaatccatcgattttgattgcgatttta 6861039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 280 - 359
Target Start/End: Complemental strand, 21554389 - 21554309
Alignment:
Q  280 attgttataaaaaa-tccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    |||||||||||||| | ||| |||||||  |||||   |||||||||||||||||||| ||||||||||||||||||||||    
T  21554389 attgttataaaaaaatgcgatttaagtcccaaaatttagatttttgcgactttgcgtagcttcaacgactcaaatccatag 21554309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 277 - 359
Target Start/End: Original strand, 3041091 - 3041169
Alignment:
Q  277 accattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    ||||||||||| ||||| ||||||||||||     |||||| |||||||||||||| ||| |||||| |||||||||||||||    
T  3041091 accattgttatcaaaaacccgacttaagtct----atcctggtttttgcgactttgtgtagcttcaatgactcaaatccatag 3041169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 608 - 653
Target Start/End: Complemental strand, 15806350 - 15806305
Alignment:
Q  608 caatttataacatatatttaaaattatttttgttttggtagaatcc 653  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||    
T  15806350 caatttataacatatatttagcattatttttgttttggtagaatcc 15806305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 615 - 677
Target Start/End: Complemental strand, 6136529 - 6136466
Alignment:
Q  615 taacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttacga 677  Q
    ||||||||| |||  |||||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  6136529 taacatatagttagtattatttttgttttggtaaaatccatcgattttgattgtgattttacga 6136466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 604 - 666
Target Start/End: Original strand, 23649385 - 23649448
Alignment:
Q  604 tatgcaatttataacatatatttaaaattatttttgttttggt-agaatcctcgattttgattg 666  Q
    ||||||||||||||||||||||||| |||||||||| |||||| | | || |||||||||||||    
T  23649385 tatgcaatttataacatatatttaacattatttttgctttggtgaaactcatcgattttgattg 23649448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 313 - 359
Target Start/End: Original strand, 22970651 - 22970697
Alignment:
Q  313 tcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    ||||| |||||||||||||||||| ||||||||| ||||||||||||    
T  22970651 tcctggtttttgcgactttgcgtagcttcaacgattcaaatccatag 22970697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 610 - 675
Target Start/End: Complemental strand, 25870286 - 25870221
Alignment:
Q  610 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    ||||||||||||||||||  |||||| || |||||||| ||||| ||||||||||||||||||||||    
T  25870286 atttataacatatatttagtattattgtt-ttttggtaaaatccatcgattttgattgcgattttac 25870221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 675
Target Start/End: Original strand, 28745920 - 28746006
Alignment:
Q  591 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    ||||||||||  |||||| | ||||||||||||||||||  |||| |||| ||| |||| ||||| ||||||||||||||||||||||    
T  28745920 agtcatttatgactatatactatttataacatatatttactattaatttt-tttgggtaaaatccatcgattttgattgcgattttac 28746006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 612 - 675
Target Start/End: Original strand, 39428069 - 39428133
Alignment:
Q  612 ttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    ||||||||||||||||  |||| |||| ||| |||| ||||| ||||||||||||||||||||||    
T  39428069 ttataacatatatttagtattaattttttttgggtaaaatccatcgattttgattgcgattttac 39428133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 675
Target Start/End: Complemental strand, 8156103 - 8156028
Alignment:
Q  601 ctatatgcaatttataacatatatttaaaattatttttgtttt-ggtagaatcctcgattttgattgcgattttac 675  Q
    |||||| | ||||||||||||||||||  |||||| || |||| |||| ||||| |||| ||||||||||||||||    
T  8156103 ctatataccatttataacatatatttagtattattattatttttggtaaaatccacgatattgattgcgattttac 8156028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 677
Target Start/End: Original strand, 13286113 - 13286176
Alignment:
Q  615 taacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttacga 677  Q
    ||||||||| |||  |||||||||||||||||| ||||| |||||||| |||| ||||||||||    
T  13286113 taacatatagttagtattatttttgttttggtaaaatccatcgattttcattgtgattttacga 13286176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 642 - 677
Target Start/End: Original strand, 27090633 - 27090668
Alignment:
Q  642 ttggtagaatcctcgattttgattgcgattttacga 677  Q
    |||||||||| |||||||||||||||||||||||||    
T  27090633 ttggtagaattctcgattttgattgcgattttacga 27090668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 608 - 647
Target Start/End: Original strand, 28135924 - 28135963
Alignment:
Q  608 caatttataacatatatttaaaattatttttgttttggta 647  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  28135924 caatttataacatatgtttaacattatttttgttttggta 28135963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 674
Target Start/End: Original strand, 42696991 - 42697077
Alignment:
Q  591 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgatttta 674  Q
    ||||||||||  |||||| | |||||||||||||||||   ||| ||||| |||||||| ||||| |||||||||||||||| ||||    
T  42696991 agtcatttatgactatataccatttataacatatatttggtatttttttttttttggtaaaatccatcgattttgattgcgagttta 42697077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 610 - 675
Target Start/End: Original strand, 20756187 - 20756252
Alignment:
Q  610 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    ||||||||||||||||||  ||||||| | ||| |||| ||||| ||||||||||||||||||||||    
T  20756187 atttataacatatatttagtattatttct-tttgggtaaaatccatcgattttgattgcgattttac 20756252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 602 - 642
Target Start/End: Original strand, 27055266 - 27055306
Alignment:
Q  602 tatatgcaatttataacatatatttaaaattatttttgttt 642  Q
    ||||||||||||| ||||||||||||  |||||||||||||    
T  27055266 tatatgcaatttacaacatatatttagcattatttttgttt 27055306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 159; Significance: 3e-84; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 448 - 675
Target Start/End: Original strand, 16752012 - 16752240
Alignment:
Q  448 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcact 547  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||    
T  16752012 ataagggtcaatttttgacccggttcgtaaattgaccagatttgaatccatgacccgttctataaatacccaagaggccaaaatttttcattccttcact 16752111  T
Q  548 tcccccacatttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttgg 645  Q
    ||||||| ||||||||||||||||||| || ||||||||||||| ||||||||  |||||||||||||||||||||||||||| |||||||||||||| |    
T  16752112 tccccca-atttatgtatatgtattttatgaactttgaactttactcatttatgactatatgcaatttataacatatatttaacattatttttgttttag 16752210  T
Q  646 tagaatcctcgattttgattgcgattttac 675  Q
    ||| ||||||||||||||||||||| ||||    
T  16752211 tagtatcctcgattttgattgcgatgttac 16752240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 555 - 677
Target Start/End: Complemental strand, 40541855 - 40541730
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattattttt-gttttggtagaat 651  Q
    |||||||||||| |||||||||| || |||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||| |||||||| ||||    
T  40541855 catttatgtatacgtattttgtgtaccttgaactttagtcatttatgactatatgcaatttataacatatatttaacattattttttgttttggttgaat 40541756  T
Q  652 cctcgattttgattgcgattttacga 677  Q
    ||| ||||||||||||||||||||||    
T  40541755 ccttgattttgattgcgattttacga 40541730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 612 - 677
Target Start/End: Original strand, 2040273 - 2040338
Alignment:
Q  612 ttataacatatatttaaaattatttttgttttggtagaatcctcgattttgattgcgattttacga 677  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2040273 ttataacatatatttaacattatttttgttttggtagaatcctcgattttgattgcgattttacga 2040338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 2040178 - 2040261
Alignment:
Q  448 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatcc--atgacccgttctataaatacccaaaaggccaaa 529  Q
    |||| ||||||||||| |||||||||||||||||||| |||||||||||  ||||| |||||||||||||||||||||||||||    
T  2040178 ataagggtcaatttttcacccggttcgtaaattgacctgatttgaatccatatgactcgttctataaatacccaaaaggccaaa 2040261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 555 - 677
Target Start/End: Complemental strand, 26575146 - 26575020
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 651  Q
    |||||||||||| |||||||||||||||| |||||| ||||||||||   ||||| ||||||| ||||||| ||||  || | |||||||||||||||||    
T  26575146 catttatgtataagtattttgtggactttaaactttgagtcatttatgattatattcaatttaaaacatatttttagcatcaattttgttttggtagaat 26575047  T
Q  652 cc-tcgattttgattgcgattttacga 677  Q
    || |||||||||||||| |||||||||    
T  26575046 ccatcgattttgattgctattttacga 26575020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 600 - 675
Target Start/End: Complemental strand, 15761333 - 15761257
Alignment:
Q  600 tctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||||| ||||| ||||||||||||||||||||||    
T  15761333 tctatatacaatttataacatatatttagcattatttttgttttggtaaaatccatcgattttgattgcgattttac 15761257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 279 - 359
Target Start/End: Original strand, 2039989 - 2040069
Alignment:
Q  279 cattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    ||||||||| ||||| ||||||||||||  |||||||||||||| ||||| ||| ||| ||||||||||||||||||||||    
T  2039989 cattgttatcaaaaacccgacttaagtctcaaaatcctgattttggcgacattgtgtagcttcaacgactcaaatccatag 2040069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 279 - 353
Target Start/End: Original strand, 16751830 - 16751904
Alignment:
Q  279 cattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaat 353  Q
    |||||||||||||||||| |||||||||  ||||||||  ||||||||||| |||| | ||||||||||||||||    
T  16751830 cattgttataaaaaatccaacttaagtctcaaaatcctagtttttgcgactatgcgaagcttcaacgactcaaat 16751904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 610 - 677
Target Start/End: Complemental strand, 30240335 - 30240267
Alignment:
Q  610 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttacga 677  Q
    |||||| | |||||||||  |||||||||||||||||||||||| || |||||||||||||||||||||    
T  30240335 atttatgatatatatttagtattatttttgttttggtagaatccatcaattttgattgcgattttacga 30240267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 558 - 673
Target Start/End: Complemental strand, 1018199 - 1018082
Alignment:
Q  558 ttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc-ct 654  Q
    ||||||||| ||||||||| |||||| || |   |||||||||  ||||||  ||||||||||||| |||||| ||||||||| |||||||||||||  |    
T  1018199 ttatgtataagtattttgttgactttaaagtgg-gtcatttatgactatatataatttataacatacatttaacattatttttattttggtagaatctat 1018101  T
Q  655 cgattttgattgcgatttt 673  Q
    |||||||||||||| ||||    
T  1018100 cgattttgattgcgctttt 1018082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 278 - 357
Target Start/End: Complemental strand, 40542294 - 40542214
Alignment:
Q  278 ccattgttataaaaaatc-cgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccat 357  Q
    |||||||||||||||| | | |||||||||  |||||  || |||||||||||||| ||| ||||||||||||||||||||    
T  40542294 ccattgttataaaaaaacgcaacttaagtcccaaaattttggtttttgcgactttgtgtagcttcaacgactcaaatccat 40542214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 486 - 556
Target Start/End: Complemental strand, 40542120 - 40542049
Alignment:
Q  486 gatttgaatccatgacccg-ttctataaatacccaaaaggccaaacttttttattctttcacttcccccaca 556  Q
    ||||||||||||||||||| ||||||||||||||||||| | |||  |||  ||||||||||||| ||||||    
T  40542120 gatttgaatccatgacccggttctataaatacccaaaagacaaaaaatttccattctttcacttcgcccaca 40542049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 608 - 677
Target Start/End: Original strand, 8582205 - 8582275
Alignment:
Q  608 caatttataacatatatttaaaattatttttgttttggtagaa-tcctcgattttgattgcgattttacga 677  Q
    |||| |||||||||||||||| ||||||| |||||||||| || || |||||||||||||  |||||||||    
T  8582205 caatgtataacatatatttaacattatttatgttttggtaaaattcatcgattttgattgtaattttacga 8582275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 609 - 677
Target Start/End: Original strand, 26879737 - 26879807
Alignment:
Q  609 aatttataacatatatttaaaattattttt-gttttggtagaatcc-tcgattttgattgcgattttacga 677  Q
    |||||||||||||||||||  || |||||| ||||| ||||||||| || |||||||||||||||||||||    
T  26879737 aatttataacatatatttagcatgattttttgtttttgtagaatccatcaattttgattgcgattttacga 26879807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 610 - 673
Target Start/End: Original strand, 6810986 - 6811048
Alignment:
Q  610 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgatttt 673  Q
    ||||||||||||||||||  ||||||||  |||||||| ||||| ||||||||||||||||||||    
T  6810986 atttataacatatatttagtattatttt--ttttggtaaaatccatcgattttgattgcgatttt 6811048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 601 - 677
Target Start/End: Complemental strand, 29384290 - 29384209
Alignment:
Q  601 ctatatgcaatttataacatatatttaaaatta----tttttgttttggtagaatcc-tcgattttgattgcgattttacga 677  Q
    |||||| | ||||||||||||||||||  ||||    ||||| |||||||| ||||| ||||||||||||||||||||||||    
T  29384290 ctatataccatttataacatatatttagtattagtatttttttttttggtaaaatccatcgattttgattgcgattttacga 29384209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 675
Target Start/End: Original strand, 11879756 - 11879830
Alignment:
Q  601 ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    |||||| | ||||||||||||||||||  |||||| || |||||||| ||||| |||||||||| |||||||||||    
T  11879756 ctatataccatttataacatatatttagtattattatt-ttttggtaaaatccatcgattttgaatgcgattttac 11879830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 675
Target Start/End: Original strand, 11897172 - 11897246
Alignment:
Q  601 ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    |||||| | ||||||||||||||||||  |||||| || |||||||| ||||| |||||||||| |||||||||||    
T  11897172 ctatataccatttataacatatatttagtattattatt-ttttggtaaaatccatcgattttgaatgcgattttac 11897246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 610 - 668
Target Start/End: Original strand, 45403194 - 45403253
Alignment:
Q  610 atttataacatatatttaaaattatttttgttttggtagaatc-ctcgattttgattgcg 668  Q
    ||||||||||||||||||| |||||| || |||||||| ||||  |||||||||||||||    
T  45403194 atttataacatatatttaatattattatttttttggtaaaatctatcgattttgattgcg 45403253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 591 - 675
Target Start/End: Original strand, 23142319 - 23142404
Alignment:
Q  591 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    ||||||||||  |||||| | ||||||||||||||||||  |||||| ||  ||||||| | ||| ||||||||||||||||||||||    
T  23142319 agtcatttatgactatataccatttataacatatatttagtattattatt--tttggtaaagtccatcgattttgattgcgattttac 23142404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 498 - 677
Target Start/End: Complemental strand, 133206 - 133025
Alignment:
Q  498 tgacccgttctataaatacccaaaaggccaaacttttttattctttcacttcccccacatttatgtatatgtattttgtggactttgaactttagtcatt 597  Q
    |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  133206 tgacccgttctataaatacccaaaaggccaaattttttcattccttcacttcccccacatttatgtatatgtattttgtggactttgaactttggtcatt 133107  T
Q  598 tat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattttgattgcgattttacga 677  Q
    |||  |||||||||||||||||||||||||||| |||| ||||||||| |||||||||| ||||||||||||||||||||||    
T  133106 tatgactatatgcaatttataacatatatttaacattaattttgttttagtagaatccttgattttgattgcgattttacga 133025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 279 - 354
Target Start/End: Complemental strand, 133388 - 133313
Alignment:
Q  279 cattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatc 354  Q
    ||||||||| ||||| |||||||||||| |||||||||| ||||| |||||||||||| |||||||||||||||||    
T  133388 cattgttatcaaaaacccgacttaagtcttaaaatcctggtttttacgactttgcgtagcttcaacgactcaaatc 133313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 134; Significance: 2e-69; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 448 - 674
Target Start/End: Original strand, 24370 - 24602
Alignment:
Q  448 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcact 547  Q
    |||| ||| ||||||| ||||||||| |||||||||| | ||||||||||||||||||||||||||||| | ||||||||||   ||| |||| ||||||    
T  24370 ataagggttaattttttacccggttcataaattgacccgctttgaatccatgacccgttctataaatactcgaaaggccaaaaaatttcattccttcact 24469  T
Q  548 tcccccacatttatgtatatgtattttgtggactttgaactttagtcat------ttatctatatgcaatttataacatatatttaaaattatttttgtt 641  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||      |||  ||||||||||||||||||||||||||| ||||||||| ||    
T  24470 tcccccacatttatgtatatgtattttgtggactttgaacttcagtcatttaatgttaaatatatgcaatttataacatatatttaacattatttttttt 24569  T
Q  642 ttggtagaatcctcgattttgattgcgatttta 674  Q
    ||||||||||| |||||||||||||||||||||    
T  24570 ttggtagaatcttcgattttgattgcgatttta 24602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 278 - 359
Target Start/End: Original strand, 24190 - 24271
Alignment:
Q  278 ccattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    |||||||||| |||||  |||||||||||  ||||||||| || |||||||||||||||||||||| |||||||||||||||    
T  24190 ccattgttatcaaaaacacgacttaagtctcaaaatcctggttcttgcgactttgcgtaacttcaatgactcaaatccatag 24271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 6e-48; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 555 - 677
Target Start/End: Original strand, 55476083 - 55476207
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 652  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  55476083 catttatgtatatgtattttgtgtactttgaactttagtcatttatgactatatgcaatttataacatatattttgcattatttttgttttggtagaatc 55476182  T
Q  653 ctcgattttgattgcgattttacga 677  Q
    |||||||||||||||||||||||||    
T  55476183 ctcgattttgattgcgattttacga 55476207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 558 - 674
Target Start/End: Original strand, 18403639 - 18403757
Alignment:
Q  558 ttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctc 655  Q
    |||||||||| |||||||||||||||||| || ||||||| ||  |||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  18403639 ttatgtatatttattttgtggactttgaatttgagtcattcatgactatatacaatttataacatatatttaacattatttttgttttggtagaatcttc 18403738  T
Q  656 gattttgattgcgatttta 674  Q
    |||||||||||||||||||    
T  18403739 gattttgattgcgatttta 18403757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 448 - 553
Target Start/End: Original strand, 8409349 - 8409455
Alignment:
Q  448 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgaccc-gttctataaatacccaaaaggccaaacttttttattctttcac 546  Q
    |||| ||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||| ||||||||||   |||  |||||||||    
T  8409349 ataagggtcaatttttgacccggttcgtaaattgacccaatttgaatccatgacccggttctataaataccctaaaggccaaaaaatttccttctttcac 8409448  T
Q  547 ttccccc 553  Q
    |||||||    
T  8409449 ttccccc 8409455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 591 - 674
Target Start/End: Original strand, 8409725 - 8409810
Alignment:
Q  591 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattttgattgcgatttta 674  Q
    ||||||||||  ||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||    
T  8409725 agtcatttatgactatatgtaatttataacatatatttagcattatttttgttttggtagaatcctcgattttgattacgatttta 8409810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 555 - 675
Target Start/End: Complemental strand, 8011157 - 8011035
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttatc--tatatgcaatttataacatatatttaaaattatttttgttttggtagaat- 651  Q
    |||||||||||| |||||||||||||||| ||||  | ||||||||   ||||| ||||||||||||||||||||  |||||||||||||||||| |||     
T  8011157 catttatgtataagtattttgtggactttaaacta-attcatttataattatatacaatttataacatatatttagcattatttttgttttggtaaaata 8011059  T
Q  652 cctcgattttgattgcgattttac 675  Q
    | ||||||||||||||||||||||    
T  8011058 catcgattttgattgcgattttac 8011035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 601 - 662
Target Start/End: Complemental strand, 8020775 - 8020714
Alignment:
Q  601 ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattttg 662  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  8020775 ctatatgcaatttataacatatatttaacattatttttgttttggtagaatcctcaattttg 8020714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 601 - 677
Target Start/End: Original strand, 24719730 - 24719807
Alignment:
Q  601 ctatatgcaatttataacatatatttaaaattatttttgttttggtagaa-tcctcgattttgattgcgattttacga 677  Q
    |||||| ||||||||||||||||||||| |||||||||| ||||||| || || ||||||||||||||||||||||||    
T  24719730 ctatatacaatttataacatatatttaacattatttttgctttggtaaaactcatcgattttgattgcgattttacga 24719807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 280 - 359
Target Start/End: Original strand, 55475585 - 55475664
Alignment:
Q  280 attgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    |||||||| |||||  ||||||||||  |||||||||||||||||||||||||||||| || ||||||| ||||||||||    
T  55475585 attgttatcaaaaacgcgacttaagttctaaaatcctgatttttgcgactttgcgtaattttaacgacttaaatccatag 55475664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 555 - 677
Target Start/End: Original strand, 4156961 - 4157084
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 652  Q
    |||||||||||| |||||||||| ||||| |||   | ||||||||  |||||| ||| |||||||||||||| || |||||||||||||| ||| ||||    
T  4156961 catttatgtataagtattttgtgaactttaaac-cgaatcatttatcactatatacaa-ttataacatatattcaacattatttttgttttagtaaaatc 4157058  T
Q  653 c-tcgattttgattgcgattttacga 677  Q
    | ||||||||||||||||||||||||    
T  4157059 catcgattttgattgcgattttacga 4157084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 602 - 675
Target Start/End: Complemental strand, 6346928 - 6346854
Alignment:
Q  602 tatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||  ||||| ||||||||||||||||||||||    
T  6346928 tatatacaatttataacatatatttatcattatttttgttttggtgaaatccatcgattttgattgcgattttac 6346854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 555 - 677
Target Start/End: Original strand, 7044871 - 7044995
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttatc--tatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 652  Q
    |||||||||||| |||| |||| |||||| ||||  |||||||||||  ||||| ||| |||||||| || ||||| |||||||||||||||||| ||||    
T  7044871 catttatgtataagtatcttgtcgactttaaactg-agtcatttatcactatatacaaattataacacatgtttaacattatttttgttttggtaaaatc 7044969  T
Q  653 c-tcgattttgattgcgattttacga 677  Q
    | |||||||||||||  |||||||||    
T  7044970 catcgattttgattgatattttacga 7044995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 555 - 673
Target Start/End: Complemental strand, 9149744 - 9149624
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 652  Q
    |||||||||||| ||||||| |||||||| | ||  ||||||||||  |||||| ||||||||||||||||||||  ||||||||| |||||||| ||||    
T  9149744 catttatgtataagtattttttggactttaagctg-agtcatttataactatatacaatttataacatatatttagcattatttttcttttggtaaaatc 9149646  T
Q  653 -ctcgattttgattgcgatttt 673  Q
      || |||||||||||| ||||    
T  9149645 tatcaattttgattgcgttttt 9149624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 279 - 359
Target Start/End: Original strand, 8409179 - 8409259
Alignment:
Q  279 cattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    |||||||||||||||  ||||||||||   ||||||| | ||||||| |||||||||| |||||| |||||||||||||||    
T  8409179 cattgttataaaaaacgcgacttaagtaccaaaatccaggtttttgcaactttgcgtagcttcaaagactcaaatccatag 8409259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 602 - 675
Target Start/End: Original strand, 8367344 - 8367419
Alignment:
Q  602 tatatgcaattt-ataacatatatttaaaattatttt-tgttttggtagaatcctcgattttgattgcgattttac 675  Q
    |||||| ||||| ||||||||||||||  |||||||| |||||||||||||||||||||||| ||||| |||||||    
T  8367344 tatatgaaatttcataacatatatttagcattattttttgttttggtagaatcctcgattttaattgcaattttac 8367419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 591 - 677
Target Start/End: Original strand, 7045085 - 7045174
Alignment:
Q  591 agtcatttatc--tatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttacga 677  Q
    |||||||||||  ||||| ||| ||||||||||||||||| ||||||||||||||||||  |||| | |||||||||||  |||||||||    
T  7045085 agtcatttatcactatatacaaattataacatatatttaacattatttttgttttggtaagatccatagattttgattgatattttacga 7045174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 555 - 644
Target Start/End: Complemental strand, 8743800 - 8743708
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaacttt-agtcatttatctatatg--caatttataacatatatttaaaattatttttgttttg 644  Q
    |||||||||| | ||||||||| |||||| |||||| ||||||||||   ||||  ||||||| ||||||||||||| |||||||||||||||    
T  8743800 catttatgtacaagtattttgtagactttaaactttgagtcatttatgactatgaacaatttaaaacatatatttaacattatttttgttttg 8743708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 555 - 674
Target Start/End: Original strand, 20812635 - 20812759
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacat--atatttaaaattatttttgttttggtaga 649  Q
    ||||||| |||| ||||||||| |||||  |||||| ||||||||||  ||||||||| ||||||| ||  |||||||  ||||||||  ||||||||||    
T  20812635 catttatttataagtattttgtagacttgaaactttgagtcatttatgactatatgcactttataatatttatatttagcattattttc-ttttggtaga 20812733  T
Q  650 atcct-cgattttgattgcgatttta 674  Q
    ||||| |||| |||||||||||||||    
T  20812734 atccttcgatcttgattgcgatttta 20812759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 603 - 647
Target Start/End: Original strand, 10394768 - 10394812
Alignment:
Q  603 atatgcaatttataacatatatttaaaattatttttgttttggta 647  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||    
T  10394768 atatacaatttataacatatatttaccattatttttgttttggta 10394812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 675
Target Start/End: Original strand, 17466223 - 17466309
Alignment:
Q  591 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    ||||||||||  |||||| | ||||||||||||||||||| ||||||||| || | ||| ||||| |||||||||||||| |||||||    
T  17466223 agtcatttatgactatataccatttataacatatatttaatattattttt-ttgttgtaaaatccatcgattttgattgcaattttac 17466309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 555 - 627
Target Start/End: Original strand, 7825158 - 7825231
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatattta 627  Q
    |||||||||||| |||||||||||||||| ||| | ||||||||||  |||||| ||||||||||| | ||||||    
T  7825158 catttatgtataagtattttgtggactttaaac-tgagtcatttatgactatatacaatttataacttgtattta 7825231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 610 - 675
Target Start/End: Original strand, 5375829 - 5375895
Alignment:
Q  610 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    ||||||||||||||||||  |||| |||| ||| |||| ||||| ||||||||||||| ||||||||    
T  5375829 atttataacatatatttagtattaattttttttgggtaaaatccatcgattttgattgtgattttac 5375895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 610 - 673
Target Start/End: Complemental strand, 46664269 - 46664210
Alignment:
Q  610 atttataacatatatttaaaattatttttgttttggtagaatcctcgattttgattgcgatttt 673  Q
    |||||||| |||||||||  ||||||||||||||||| ||||    ||||||||||||||||||    
T  46664269 atttataatatatatttagcattatttttgttttggtggaat----gattttgattgcgatttt 46664210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 555 - 645
Target Start/End: Complemental strand, 18459637 - 18459546
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttgg 645  Q
    |||||||||||| |||||||||||||||| |||   ||||||||||  |||||| || || ||||||||||||||   ||| |||||||||||    
T  18459637 catttatgtataagtattttgtggactttaaac-cgagtcatttatgactatatacagttcataacatatatttagcgttacttttgttttgg 18459546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 591 - 675
Target Start/End: Original strand, 36120968 - 36121053
Alignment:
Q  591 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    ||||||||||  |||||| | |||||||| |||||||||  |||||| ||  ||||||| ||||| ||||||||||||||||||||||    
T  36120968 agtcatttatgactatataccatttataaaatatatttagtattattatt--tttggtaaaatccatcgattttgattgcgattttac 36121053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 603 - 643
Target Start/End: Complemental strand, 5846090 - 5846050
Alignment:
Q  603 atatgcaatttataacatatatttaaaattatttttgtttt 643  Q
    |||| ||||||||||||||||||||  ||||||||||||||    
T  5846090 atatacaatttataacatatatttagcattatttttgtttt 5846050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 603 - 674
Target Start/End: Complemental strand, 5884265 - 5884193
Alignment:
Q  603 atatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgatttta 674  Q
    |||||||||||||||||||  ||||  |||| ||||||||| ||| ||||| || |||||||||| |||||||    
T  5884265 atatgcaatttataacatacttttagcattacttttgtttttgtaaaatccatctattttgattgtgatttta 5884193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 591 - 675
Target Start/End: Complemental strand, 9911396 - 9911310
Alignment:
Q  591 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    ||||||||||  |||||| | |||||||||||||||| |  |||||| || |||||||| | ||| ||||||||||||||||||||||    
T  9911396 agtcatttatgactatataccatttataacatatattaagtattattatt-ttttggtaaagtccatcgattttgattgcgattttac 9911310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 612 - 675
Target Start/End: Original strand, 10143066 - 10143130
Alignment:
Q  612 ttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    |||||| |||||||||  ||||||||| ||||| || ||||| || |||||||||||||||||||    
T  10143066 ttataatatatatttagtattattttttttttgataaaatccatcaattttgattgcgattttac 10143130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 601 - 653
Target Start/End: Original strand, 27527953 - 27528005
Alignment:
Q  601 ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc 653  Q
    |||||||||||||| |||||||| |||  |||||||||  |||||||||||||    
T  27527953 ctatatgcaatttacaacatatagttagcattattttttatttggtagaatcc 27528005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 555 - 675
Target Start/End: Original strand, 41427513 - 41427636
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaacttta-gtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 651  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||| |||||||||  ||||||||||||||||||||||    
T  41427513 catttatgtatatgtattttgtggactttgaactttaagtcatttatgactatatgcaatttataatatatatttatcattatttttgttttggtagaat 41427612  T
Q  652 cctcgattttgattgcgattttac 675  Q
    |||||||||||||||| |||||||    
T  41427613 cctcgattttgattgcaattttac 41427636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 575 - 677
Target Start/End: Complemental strand, 15052101 - 15052001
Alignment:
Q  575 gtggactttgaactttagtcatttatctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattttgattgcgatttta 674  Q
    ||||| ||||||||||||||||    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15052101 gtggattttgaactttagtcatga--ctatatgcaatttataacatatatttaacattatttttgttttggtagaatcctcgattttgattgcgatttta 15052004  T
Q  675 cga 677  Q
    |||    
T  15052003 cga 15052001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 555 - 654
Target Start/End: Original strand, 19377707 - 19377809
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaacttta-gtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 651  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||  |||||| ||||||||||||||||||||| |||||||||||||| |||||||    
T  19377707 catttatgtatatgtattttgtggactttgaactttaagtcatttatgactatatccaatttataacatatatttaacattatttttgtttttgtagaat 19377806  T
Q  652 cct 654  Q
    |||    
T  19377807 cct 19377809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 555 - 650
Target Start/End: Complemental strand, 187906 - 187809
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaa 650  Q
    ||||||||||||| |||||||||||||| |||||||||| ||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  187906 catttatgtatatatattttgtggacttcgaactttagttatttattactatatgcaatttataacatatatttaacattatttttgttttggtagaa 187809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 555 - 677
Target Start/End: Complemental strand, 22984836 - 22984711
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 651  Q
    ||||||||||||||||||||||||| |||||||||| |||||| |||  |||||||||||||||||||||||||||  ||||||||  | ||||||||||    
T  22984836 catttatgtatatgtattttgtggaatttgaactttgagtcatctatgactatatgcaatttataacatatatttagcattattttactattggtagaat 22984737  T
Q  652 cctcgattttgattgcgattttacga 677  Q
    |||||||||||||||  |||||||||    
T  22984736 cctcgattttgattggaattttacga 22984711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 448 - 524
Target Start/End: Complemental strand, 15052177 - 15052101
Alignment:
Q  448 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaagg 524  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  15052177 ataagggtcaatttttgacccggttcgtaaattgacctgatttgaatccatgacccgttctataaataaccaaaagg 15052101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 465 - 556
Target Start/End: Original strand, 41427311 - 41427403
Alignment:
Q  465 acccggttcgtaaattgaccggatttgaatccatgaccc-gttctataaatacccaaaaggccaaacttttttattctttcacttcccccaca 556  Q
    |||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||| ||| ||||| ||||||||||||||||||||    
T  41427311 acccggttcgtaaattgacccgatttgaatccattacccagttctataaatacccaaaaggctaaattttttcattctttcacttcccccaca 41427403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 555 - 677
Target Start/End: Original strand, 15446305 - 15446431
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaacttt-agtcatttatc--tatatgcaatttataacatatatttaaaattatttttgttttggtagaat 651  Q
    |||||||||| | ||| |||||||||||| |||||| ||||||||||   | | ||||||| ||||||||||||||   |||||||||||||| ||||||    
T  15446305 catttatgtacaagtaatttgtggactttaaactttgagtcatttatgagtgtgtgcaattgataacatatatttatcgttatttttgttttgatagaat 15446404  T
Q  652 cc-tcgattttgattgcgattttacga 677  Q
    || ||||||||||||||||||||||||    
T  15446405 ccatcgattttgattgcgattttacga 15446431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 555 - 673
Target Start/End: Original strand, 24648125 - 24648245
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 652  Q
    |||||||||||| |||||||||||||||| || || ||||||||||  |||||| |||||||||| |||||||||  ||||||| |||||| ||| ||||    
T  24648125 catttatgtataagtattttgtggacttt-aaattgagtcatttatgactatatacaatttataatatatatttagcattatttatgttttagtaaaatc 24648223  T
Q  653 c-tcgattttgattgcgatttt 673  Q
    |  |||||||||||||||||||    
T  24648224 caccgattttgattgcgatttt 24648245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 448 - 550
Target Start/End: Original strand, 19377234 - 19377337
Alignment:
Q  448 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatga-cccgttctataaatacccaaaaggccaaacttttttattctttcac 546  Q
    |||| |||||||||||||||| |||| | |||||||| |||||||| |||||| || ||||||||||||||||||||| ||||   ||| ||||||||||    
T  19377234 ataagggtcaatttttgacccagttcatcaattgacccgatttgaagccatgatccggttctataaatacccaaaaggtcaaaaaatttcattctttcac 19377333  T
Q  547 ttcc 550  Q
    ||||    
T  19377334 ttcc 19377337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 608 - 677
Target Start/End: Complemental strand, 43005826 - 43005756
Alignment:
Q  608 caatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttacga 677  Q
    ||||||||||||||||||||  |||||||||||||||||| ||||| |||||||| |||||||||||||||    
T  43005826 caatttataacatatatttagcattatttttgttttggtacaatccatcgattttaattgcgattttacga 43005756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 601 - 675
Target Start/End: Complemental strand, 9996957 - 9996882
Alignment:
Q  601 ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    ||||| ||||||||||||||||||| |  |||||||||||||||||| ||||| |||||||||||||  |||||||    
T  9996957 ctataagcaatttataacatatattaagcattatttttgttttggtaaaatccatcgattttgattgtaattttac 9996882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 296 - 359
Target Start/End: Original strand, 41427100 - 41427163
Alignment:
Q  296 cgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    |||||| ||||  ||||||| | ||||||| |||||||||| ||||||||||||||||||||||    
T  41427100 cgacttcagtcccaaaatccaggtttttgcaactttgcgtagcttcaacgactcaaatccatag 41427163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 614 - 675
Target Start/End: Original strand, 19579111 - 19579173
Alignment:
Q  614 ataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    |||||||||||||   ||||||||| |||||||| ||||| ||||||||||||||||||||||    
T  19579111 ataacatatatttggtattattttttttttggtaaaatccatcgattttgattgcgattttac 19579173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 610 - 675
Target Start/End: Original strand, 20321107 - 20321173
Alignment:
Q  610 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    ||||||||||||||||||| |||| |||| | | |||| ||||| ||||||||||||||||||||||    
T  20321107 atttataacatatatttaatattaattttttctgggtaaaatccatcgattttgattgcgattttac 20321173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 453 - 549
Target Start/End: Complemental strand, 22985024 - 22984928
Alignment:
Q  453 ggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgaccc-gttctataaatacccaaaaggccaaacttttttattctttcacttc 549  Q
    ||||||||||||| || ||| || || ||||| |||||| | ||||||||| |||||||||||| | ||||| ||||| ||||| |||||||||||||    
T  22985024 ggtcaatttttgatccagttagtcaaatgacccgatttgtacccatgacccggttctataaatatcaaaaagaccaaa-tttttcattctttcacttc 22984928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 296 - 355
Target Start/End: Original strand, 4289827 - 4289886
Alignment:
Q  296 cgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatcc 355  Q
    |||||||||||  |||| || |||||||||||||||||||| ||||||| ||| ||||||    
T  4289827 cgacttaagtcccaaaacccagatttttgcgactttgcgtagcttcaacaacttaaatcc 4289886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 359
Target Start/End: Original strand, 19377076 - 19377135
Alignment:
Q  300 ttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    ||||||| ||||||  || |||||||||||||| ||| ||||||||||||||||| ||||    
T  19377076 ttaagtcctaaaattttggtttttgcgactttgtgtagcttcaacgactcaaatctatag 19377135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 647
Target Start/End: Original strand, 26021464 - 26021522
Alignment:
Q  591 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggta 647  Q
    ||||||||||  |||||| ||||||||||||||||||||  |||||| |||||||||||    
T  26021464 agtcatttatgactatatacaatttataacatatatttagcattattattgttttggta 26021522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 601 - 661
Target Start/End: Complemental strand, 13348874 - 13348812
Alignment:
Q  601 ctatatgcaatttataacatata-tttaaaattatttttgttttggtagaatcc-tcgatttt 661  Q
    ||||||||||||||||| ||||| ||||| ||||||||| ||||| |||||||| ||||||||    
T  13348874 ctatatgcaatttataatatatattttaacattatttttattttgatagaatccatcgatttt 13348812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 610 - 675
Target Start/End: Original strand, 18843880 - 18843945
Alignment:
Q  610 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    ||||||||||||||||||  |||| |||| ||| |||| ||||| ||||||||||||||||||||||    
T  18843880 atttataacatatatttagtattaatttt-tttgggtaaaatccatcgattttgattgcgattttac 18843945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 591 - 675
Target Start/End: Complemental strand, 23172413 - 23172327
Alignment:
Q  591 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    ||||||||||  |||||| | |||| |||||||||||||| |||| |||| ||| |||| ||| | ||||||||||||||||||||||    
T  23172413 agtcatttatgactatataccatttgtaacatatatttaatattaatttt-tttgggtaaaattcatcgattttgattgcgattttac 23172327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 601 - 675
Target Start/End: Complemental strand, 41688638 - 41688565
Alignment:
Q  601 ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    |||||| | ||| ||||||||||||||  |||||||||  ||||||| ||| | ||||||||||||||||||||||    
T  41688638 ctatataccattcataacatatatttagtattattttt--tttggtaaaattcatcgattttgattgcgattttac 41688565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 6e-42; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 554 - 677
Target Start/End: Original strand, 27890479 - 27890605
Alignment:
Q  554 acatttatgtatatgtattttgtggactttgaactttag-tcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaa 650  Q
    |||||||| |||||||||||||||||||||||||||||  ||||||||  |||||||||||||||||||||||||||  |||||||||||||||||||||    
T  27890479 acatttatatatatgtattttgtggactttgaactttaactcatttatgactatatgcaatttataacatatatttagcattatttttgttttggtagaa 27890578  T
Q  651 tcctcgattttgattgcgattttacga 677  Q
    | |||||||||||||||||||||||||    
T  27890579 ttctcgattttgattgcgattttacga 27890605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 556 - 677
Target Start/End: Original strand, 31108252 - 31108374
Alignment:
Q  556 atttatgtatatgtattttgtggactttgaacttta-gtcatttatctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcct 654  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||   ||||||||||||||||| ||||||   ||| |||||||||| |||||||||    
T  31108252 atttatgtatatgtattttgcggactttgaactttaagtcatttatgactatgcaatttataacatgtatttagctttacttttgttttgttagaatcct 31108351  T
Q  655 cgattttgattgcgattttacga 677  Q
    |||||||||||||||||||||||    
T  31108352 cgattttgattgcgattttacga 31108374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 448 - 556
Target Start/End: Original strand, 27890301 - 27890410
Alignment:
Q  448 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgaccc-gttctataaatacccaaaaggccaaacttttttattctttcac 546  Q
    |||| ||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||   ||| ||||||||||    
T  27890301 ataagggtcaatttttgacccggttcgtaaattgacccaatttgaatccatgacccggttctataaatacccaaaaggccaaaaactttcattctttcac 27890400  T
Q  547 ttcccccaca 556  Q
    ||||||||||    
T  27890401 ttcccccaca 27890410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 555 - 677
Target Start/End: Original strand, 31407402 - 31407528
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 651  Q
    |||||||||||| |||||||||||| ||| |||||| ||||||||||  | |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31407402 catttatgtataagtattttgtggaatttaaactttgagtcatttatgacaatatgcaatttataacatatatttaacattatttttgttttggtagaat 31407501  T
Q  652 -cctcgattttgattgcgattttacga 677  Q
     | |||| |||||||| ||||||||||    
T  31407502 gcgtcgactttgattgtgattttacga 31407528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 555 - 674
Target Start/End: Complemental strand, 33593186 - 33593063
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 651  Q
    |||||||||||| ||||||||| |||||  |||||| ||||| | ||  |||||||||||||||||||||| ||||| ||||||||| ||||||||||||    
T  33593186 catttatgtataagtattttgtagacttgaaactttgagtcaataatgactatatgcaatttataacatatgtttaacattatttttcttttggtagaat 33593087  T
Q  652 cc-tcgattttgattgcgatttta 674  Q
    || |||||||||||||||||||||    
T  33593086 ccatcgattttgattgcgatttta 33593063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 555 - 677
Target Start/End: Complemental strand, 18490660 - 18490536
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttatc--tatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 652  Q
    |||||||||||||||||||||||||||||  |||  ||| ||||| |  ||||| | ||||||||||||||||||  |||||||||| ||||||||||||    
T  18490660 catttatgtatatgtattttgtggactttatactg-agttatttagcactatatacgatttataacatatatttatcattatttttgatttggtagaatc 18490562  T
Q  653 c-tcgattttgattgcgattttacga 677  Q
    | || |||||||||||||||||||||    
T  18490561 catcaattttgattgcgattttacga 18490536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 568 - 666
Target Start/End: Complemental strand, 20400096 - 20399994
Alignment:
Q  568 gtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttga 663  Q
    |||||||||||||||| ||| || ||| ||||||  |||||||||||||||||||||||||||  ||||||||||||||||| |||||| ||||||||||    
T  20400096 gtattttgtggactttaaacattgagttatttatgactatatgcaatttataacatatatttatcattatttttgttttggtggaatccatcgattttga 20399997  T
Q  664 ttg 666  Q
    |||    
T  20399996 ttg 20399994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 555 - 677
Target Start/End: Complemental strand, 20432628 - 20432503
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 651  Q
    |||||||||| | |||||||||||||||  || ||| ||| ||||||  ||||||||||||||||||||||| |||  ||||||||||||||||| ||||    
T  20432628 catttatgtaaaagtattttgtggacttaaaattttgagttatttatgactatatgcaatttataacatata-ttagtattatttttgttttggtggaat 20432530  T
Q  652 cc-tcgattttgattgcgattttacga 677  Q
    || |||||||||||||||| |||||||    
T  20432529 ccatcgattttgattgcgaatttacga 20432503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 555 - 673
Target Start/End: Complemental strand, 7622003 - 7621882
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttag--tcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaa 650  Q
    |||||||||||| ||||||| || ||||  |||||| |  ||||||||  ||||| ||||||||||| |||||||||  |||||||||||||||||||||    
T  7622003 catttatgtataagtattttatgaacttgaaacttttgaatcatttatgactataggcaatttataatatatatttatcattatttttgttttggtagaa 7621904  T
Q  651 tcctcgattttgattgcgatttt 673  Q
    | ||||| ||||||| |||||||    
T  7621903 t-ctcgagtttgattacgatttt 7621882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 569 - 675
Target Start/End: Complemental strand, 5422665 - 5422564
Alignment:
Q  569 tattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattttgattg 666  Q
    ||||||||||||||| ||  || |||||||||  ||||||  |||||||||||||||||||  |||||||||||||||||| ||||     |||||||||    
T  5422665 tattttgtggactttaaa--ttggtcatttatgactatatataatttataacatatatttagcattatttttgttttggtaaaatc-----ttttgattg 5422573  T
Q  667 cgattttac 675  Q
    |||||||||    
T  5422572 cgattttac 5422564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 603 - 673
Target Start/End: Complemental strand, 8275503 - 8275434
Alignment:
Q  603 atatgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattttgattgcgatttt 673  Q
    ||||||||||||||||||||||| |  ||||||||||||| ||||  ||||| ||||||||||||||||||    
T  8275503 atatgcaatttataacatatatt-agtattatttttgtttgggtattatccttgattttgattgcgatttt 8275434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 608 - 677
Target Start/End: Complemental strand, 4841796 - 4841726
Alignment:
Q  608 caatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttacga 677  Q
    |||||||||||||||||||   ||  |||||||||||||| ||| | ||||||||||||||||||||||||    
T  4841796 caatttataacatatattttgcatattttttgttttggtaaaatacatcgattttgattgcgattttacga 4841726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 602 - 677
Target Start/End: Complemental strand, 4596843 - 4596764
Alignment:
Q  602 tatatgcaatttataacatatatttaaaattatttt---tgttttggtagaatcc-tcgattttgattgcgattttacga 677  Q
    ||||||||||| ||||||| ||||||  ||||||||   ||||||||||||||||  ||||||| |||||||||||||||    
T  4596843 tatatgcaattaataacatgtatttagcattatttttgctgttttggtagaatccaccgatttttattgcgattttacga 4596764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 675
Target Start/End: Original strand, 23897955 - 23898041
Alignment:
Q  591 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    ||||||||||  |||||| | ||||||||||||||||||  ||| ||||| |||||||| ||||| ||||||||||||| ||||||||    
T  23897955 agtcatttatgactatataccatttataacatatatttagtatt-ttttttttttggtaaaatccatcgattttgattgagattttac 23898041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 27890143 - 27890211
Alignment:
Q  290 aaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccata 358  Q
    |||||| ||||||||||  ||||| | | |||||||||||||| ||| ||| |||||||||||||||||    
T  27890143 aaaatctgacttaagtcccaaaattcaggtttttgcgactttgtgtagctttaacgactcaaatccata 27890211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 675
Target Start/End: Complemental strand, 26053269 - 26053195
Alignment:
Q  601 ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    |||||| | |||||||||||||| |||  |||||| || |||||||| ||||| ||||||||||||||||||||||    
T  26053269 ctatataccatttataacatatagttagtattattatt-ttttggtaaaatccatcgattttgattgcgattttac 26053195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 675
Target Start/End: Complemental strand, 26073322 - 26073248
Alignment:
Q  601 ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    |||||| | |||||||||||||| |||  |||||| || |||||||| ||||| ||||||||||||||||||||||    
T  26073322 ctatataccatttataacatatagttagtattattatt-ttttggtaaaatccatcgattttgattgcgattttac 26073248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 591 - 642
Target Start/End: Original strand, 645417 - 645470
Alignment:
Q  591 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttt 642  Q
    ||||||||||  |||||||||||||||||||||||||||  |||||| ||||||    
T  645417 agtcatttatgactatatgcaatttataacatatatttagcattattattgttt 645470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 630 - 675
Target Start/End: Complemental strand, 3573845 - 3573799
Alignment:
Q  630 attatttttgttttggtagaa-tcctcgattttgattgcgattttac 675  Q
    |||||||||||||||||| || || ||||||||||||||||||||||    
T  3573845 attatttttgttttggtaaaactcatcgattttgattgcgattttac 3573799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 610 - 675
Target Start/End: Complemental strand, 10508982 - 10508916
Alignment:
Q  610 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    ||||||||||||||||||  |||||| || ||||| || ||||| || |||||||||||||||||||    
T  10508982 atttataacatatatttattattattattattttgataaaatccatcaattttgattgcgattttac 10508916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 675
Target Start/End: Complemental strand, 7918312 - 7918249
Alignment:
Q  610 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    |||||||||||| |||||  |||||||||   |||||| ||||| ||||||||||||||||||||||    
T  7918312 atttataacataaatttagtattattttt---ttggtaaaatccatcgattttgattgcgattttac 7918249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1178 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold1178
Description:

Target: scaffold1178; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 555 - 677
Target Start/End: Original strand, 429 - 554
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 651  Q
    |||||||||||||| |||||||| |||||||||||| ||||||||||  |||||||||||||||| ||||||||||  ||||||||||||||||||||||    
T  429 catttatgtatatgcattttgtgcactttgaactttgagtcatttatgactatatgcaatttatatcatatatttagcattatttttgttttggtagaat 528  T
Q  652 cctcgattttgattgcgattttacga 677  Q
    ||||||||||||||||||||||||||    
T  529 cctcgattttgattgcgattttacga 554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 555 - 675
Target Start/End: Complemental strand, 5246 - 5124
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 652  Q
    |||||||||| |||||||||||||||||||||||||  ||||||||  ||| |||||||||||||||||||||||  |||||||||  ||||||||||||    
T  5246 catttatgtacatgtattttgtggactttgaactttgatcatttatgactacatgcaatttataacatatatttagcattatttttcatttggtagaatc 5147  T
Q  653 ctcgattttgattgcgattttac 675  Q
    |||||||||||||||||||||||    
T  5146 ctcgattttgattgcgattttac 5124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 563 - 677
Target Start/End: Original strand, 8260 - 8375
Alignment:
Q  563 tatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattt 660  Q
    |||||||||||| || ||||||||||||||||||||||  |||||||||||||||| ||||||||||  ||||| |||||||||||||||||||||||||    
T  8260 tatatgtattttctgtactttgaactttagtcatttatgactatatgcaatttata-catatatttagtattatatttgttttggtagaatcctcgattt 8358  T
Q  661 tgattgcgattttacga 677  Q
    |||||||||||||||||    
T  8359 tgattgcgattttacga 8375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 451 - 556
Target Start/End: Original strand, 7909 - 8015
Alignment:
Q  451 aaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgaccc-gttctataaatacccaaaaggccaaacttttttattctttcacttc 549  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||   ||| ||||||| |||||    
T  7909 aaggtcaattttttacccggttcgtaaattgacccgatttgaatccatgacccagttctataaatacctaaaaggccaaaaaatttcattcttttacttc 8008  T
Q  550 ccccaca 556  Q
    |||||||    
T  8009 ccccaca 8015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 310 - 359
Target Start/End: Original strand, 7770 - 7819
Alignment:
Q  310 aaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||||||||    
T  7770 aaatcctggtttttgcgactttgtgtagcttcaacgactcaaatccatag 7819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 555 - 675
Target Start/End: Original strand, 2872 - 2994
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 652  Q
    |||||||||| ||||||||| |||||||||||||||  ||||||||  ||| |||||| ||||||||||||||||  |||||||||  ||||||||||||    
T  2872 catttatgtacatgtattttatggactttgaactttgatcatttatgactacatgcaaattataacatatatttagcattatttttcatttggtagaatc 2971  T
Q  653 ctcgattttgattgcgattttac 675  Q
    |||||||||||||||||||||||    
T  2972 ctcgattttgattgcgattttac 2994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 556 - 677
Target Start/End: Complemental strand, 38565 - 38436
Alignment:
Q  556 atttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgt-----tttggta 647  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||  |||||| ||||||||||||||||||||  |||||||||||     |||||||    
T  38565 atttatgtatatgtattttgtggactttgaactttaagtcctttatgactatatacaatttataacatatatttatcattatttttgttttaatttggta 38466  T
Q  648 gaatcctcgattttgattgcgattttacga 677  Q
    ||||| |||||||| |||||||||||||||    
T  38465 gaatcttcgattttaattgcgattttacga 38436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 454 - 556
Target Start/End: Complemental strand, 128895 - 128792
Alignment:
Q  454 gtcaatttttgacccggttcgtaaattgaccggatttgaatccatgaccc-gttctataaatacccaaaaggccaaacttttttattctttcacttcccc 552  Q
    |||||||||| || |||||||| |||||||| |||||||||||||||||| |||||||||||| ||| |||||||||  |||| ||||||| ||||||||    
T  128895 gtcaattttttactcggttcgtcaattgacccgatttgaatccatgacccagttctataaatagccataaggccaaaaattttcattctttaacttcccc 128796  T
Q  553 caca 556  Q
    ||||    
T  128795 caca 128792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 129072 - 129010
Alignment:
Q  297 gacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    ||||||||||  ||||||| | | ||||||| |||||||| ||||||||||||||||||||||    
T  129072 gacttaagtcccaaaatccaggtgtttgcgagtttgcgtagcttcaacgactcaaatccatag 129010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 555 - 591
Target Start/End: Complemental strand, 128710 - 128674
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaacttta 591  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  128710 catttgtgtatatgtattttgtggacattgaacttta 128674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 66; Significance: 8e-29; HSPs: 5)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 448 - 556
Target Start/End: Complemental strand, 1848 - 1739
Alignment:
Q  448 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgaccc-gttctataaatacccaaaaggccaaacttttttattctttcac 546  Q
    |||| |||||||||||||| |||||| | |||||||| ||||||||||||| |||| |||||||||||||||| ||||||||| ||||| ||||||||||    
T  1848 ataagggtcaatttttgactcggttcctcaattgacctgatttgaatccattaccccgttctataaatacccataaggccaaattttttcattctttcac 1749  T
Q  547 ttcccccaca 556  Q
    ||||||||||    
T  1748 ttcccccaca 1739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 448 - 556
Target Start/End: Complemental strand, 7359 - 7250
Alignment:
Q  448 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgaccc-gttctataaatacccaaaaggccaaacttttttattctttcac 546  Q
    |||| |||||||||||||| |||||| | |||||||| ||||||||||||| |||| |||||||||||||||| ||||||||| ||||| ||||||||||    
T  7359 ataagggtcaatttttgactcggttcctcaattgacctgatttgaatccattaccccgttctataaatacccataaggccaaattttttcattctttcac 7260  T
Q  547 ttcccccaca 556  Q
    ||||||||||    
T  7259 ttcccccaca 7250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 601 - 677
Target Start/End: Complemental strand, 76299 - 76218
Alignment:
Q  601 ctatatgcaatttataacatatatttaaaattatttttgt-----tttggtagaatcctcgattttgattgcgattttacga 677  Q
    |||||| ||||||||||||||||||||  |||||||||||     |||||||||||||| |||||| ||| |||||||||||    
T  76299 ctatatacaatttataacatatatttatcattatttttgttttaatttggtagaatcctggattttaatttcgattttacga 76218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 2019 - 1957
Alignment:
Q  297 gacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    ||||||||||  ||||||| | | |||||||||||||||| ||| ||||||||||||||||||    
T  2019 gacttaagtcccaaaatccaggtgtttgcgactttgcgtagctttaacgactcaaatccatag 1957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 7530 - 7468
Alignment:
Q  297 gacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    ||||||||||  ||||||| | | |||||||||||||||| ||| ||||||||||||||||||    
T  7530 gacttaagtcccaaaatccaggtgtttgcgactttgcgtagctttaacgactcaaatccatag 7468  T

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Target: scaffold0001 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 555 - 674
Target Start/End: Original strand, 142725 - 142845
Alignment:
Q  555 catttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 651  Q
    |||||||||||||||||||| ||||||||||||||| | |||||| |  |||||||||||||||||||||||||||  ||||||||   |||||| ||||    
T  142725 catttatgtatatgtattttttggactttgaactttgaatcatttttgactatatgcaatttataacatatatttagcattatttt--gtttggtcgaat 142822  T
Q  652 cctcgattttgattgcgatttta 674  Q
    ||||||||||||||| |||||||    
T  142823 cctcgattttgattgagatttta 142845  T

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Target: scaffold0259 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 602 - 677
Target Start/End: Original strand, 18540 - 18616
Alignment:
Q  602 tatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttacga 677  Q
    ||||||||||||||||||||||||||  ||||||||||||||| |||||||| || ||||||||||| |||||||||    
T  18540 tatatgcaatttataacatatatttagtattatttttgttttgatagaatccatctattttgattgcaattttacga 18616  T

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Target: scaffold0079 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 630 - 677
Target Start/End: Complemental strand, 14883 - 14836
Alignment:
Q  630 attatttttgttttggtagaatcctcgattttgattgcgattttacga 677  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14883 attatttttgttttggtagaatcctcgattttgattgcgattttacga 14836  T

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Target: scaffold0079; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 448 - 518
Target Start/End: Complemental strand, 14997 - 14927
Alignment:
Q  448 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaataccc 518  Q
    |||| |||||||||||| |||||||||||||| |||| ||||||||| |||||| ||||||||||||||||    
T  14997 ataagggtcaatttttgtcccggttcgtaaatagacccgatttgaattcatgacgcgttctataaataccc 14927  T

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Target: scaffold0079; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 279 - 359
Target Start/End: Complemental strand, 15176 - 15096
Alignment:
Q  279 cattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 359  Q
    ||||||||| ||||| ||||||||||||  ||||| ||| |||||| ||||||| ||| ||||||||||||||||||||||    
T  15176 cattgttatcaaaaacccgacttaagtctcaaaattctggtttttgtgactttgtgtagcttcaacgactcaaatccatag 15096  T

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Target: scaffold0603 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 591 - 675
Target Start/End: Complemental strand, 8945 - 8858
Alignment:
Q  591 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    ||||||||||  |||||| ||| ||||||||||||||||  ||||| |||||||||||| ||||| ||||||||||||||||||||||    
T  8945 agtcatttatgactatatacaacttataacatatatttagcattatctttgttttggtaaaatccatcgattttgattgcgattttac 8858  T

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Target: scaffold2084 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold2084
Description:

Target: scaffold2084; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 630 - 677
Target Start/End: Original strand, 1 - 48
Alignment:
Q  630 attatttttgttttggtagaatcctcgattttgattgcgattttacga 677  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||    
T  1 attatttttgttttggtagaatcctctattttgattgcgactttacga 48  T

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Target: scaffold0186 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 591 - 675
Target Start/End: Original strand, 8587 - 8671
Alignment:
Q  591 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    ||||||||||  |||||| | ||||||| ||||||||||  |||||||||   |||||| ||||| ||||||||||||||||||||||    
T  8587 agtcatttatgactatataccatttataccatatatttagtattattttt---ttggtaaaatccatcgattttgattgcgattttac 8671  T

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Target: scaffold0048 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 617 - 677
Target Start/End: Complemental strand, 48620 - 48559
Alignment:
Q  617 acatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttacga 677  Q
    |||||||||||| ||||||||||||| | || | ||| ||||||||||| ||||||||||||    
T  48620 acatatatttaacattatttttgtttggataaagtccatcgattttgatcgcgattttacga 48559  T

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Target: scaffold0042 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 614 - 677
Target Start/End: Complemental strand, 93665 - 93602
Alignment:
Q  614 ataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttacga 677  Q
    ||||||||||||||  | ||||| | |||||||| ||||| ||||||||||||||||||||||||    
T  93665 ataacatatatttagtaatatttgt-ttttggtaaaatccatcgattttgattgcgattttacga 93602  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 616 - 675
Target Start/End: Complemental strand, 56384 - 56324
Alignment:
Q  616 aacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 675  Q
    ||||||||||||  ||| ||||| | |||||| ||||| ||||||||||||||||||||||    
T  56384 aacatatatttagtattttttttttgttggtaaaatccatcgattttgattgcgattttac 56324  T

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