View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1137_high_132 (Length: 252)
Name: NF1137_high_132
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_high_132 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 35815078 - 35815314
Alignment:
| Q |
1 |
tatgtattttgatttatcaattatatagcttcaaatctttcagtagaatctaaactaattaattaattagcagcaacttgtatatataactatagctata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35815078 |
tatgtattttgatttatcaattatatagcttcaaatctttcagtagaatctaaactaattaattaattagca---acttgtatatataactatagctata |
35815174 |
T |
|
| Q |
101 |
agataaatttacatttgaattattggatatccgatgggagaagcagaaaaggattagataacaaattaaagatcagtatattgaaagtcttgataaatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35815175 |
agataaatttacatttgaattattggatatccgatgggagaagcagaaaaggattagataacaaattaaagatcagtatattgaaagtcttgataaatga |
35815274 |
T |
|
| Q |
201 |
aaatagg--aaaagaggtcgagtatatggatagagcaaca |
238 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
35815275 |
aaataggaaaaaagaggtcaagtatatggatagagcaaca |
35815314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University