View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_high_142 (Length: 247)
Name: NF1137_high_142
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_high_142 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 1856913 - 1857132
Alignment:
| Q |
1 |
tagcaatggtactctttctgaatttattcacacaaaaggtaagacgaatgatccaacttggaagactcgtcttaagatagccgcagaggtagctgaggct |
100 |
Q |
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| T |
1856913 |
tagcaatggtactctttctgaatttattcacacaaaaggtaagacgaatgatccaacttggaagactcgtcttaagatagccgcagaggtagctgaggct |
1857012 |
T |
|
| Q |
101 |
ctgtcatatctacattcatatgcctcaacacccatcatccatagagatgtcaagagtgataacattctcttagatggaaccaacaccgccaaagtgtcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1857013 |
ctgtcatatctacattcatatgcctcaacacccatcatccatagagatgtcaagagtgataacattctcttagatggaaccaacaccgccaaagtgtcgg |
1857112 |
T |
|
| Q |
201 |
attttggagcttcaagattg |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
1857113 |
attttggagcttcaagattg |
1857132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1816131 - 1815910
Alignment:
| Q |
1 |
tagcaatggtactctttctgaatttattcacacaaaaggtaagacgaatgatccaacttggaagactcgtcttaagatagccgcagaggtagctgaggct |
100 |
Q |
| |
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||||||||||||||||||||||||| ||| |||| ||||||||||||| |||| |||||||| |||||||||| |||||| | |||||||||| ||| |
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| T |
1816131 |
tagcaatggtactctttctgaatttcttcgcacacaaggtaagacgaacgatcttacttggaaaactcgtcttaggatagctgttgaggtagctggagct |
1816032 |
T |
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| Q |
101 |
ctgtcatatctacattcatatgcctcaacacccatcatccatagagatgtcaagagtgataacattctcttagatggaaccaacaccgccaaagtgtcag |
200 |
Q |
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| T |
1816031 |
ctgtcatatctgcattcagctgcctcaatacccattatccatagagatgtcaagagtgctaacattctcttagatggaaccaacaccgctaaagtgtcag |
1815932 |
T |
|
| Q |
201 |
attttggagcttcaagattgat |
222 |
Q |
| |
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|||||||||| ||||| ||||| |
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| T |
1815931 |
attttggagcatcaaggttgat |
1815910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 59 - 220
Target Start/End: Original strand, 1868569 - 1868730
Alignment:
| Q |
59 |
tggaagactcgtcttaagatagccgcagaggtagctgaggctctgtcatatctacattcatatgcctcaacacccatcatccatagagatgtcaagagtg |
158 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1868569 |
tggaaaactcgtcttaagatagccgcagaggtagctgaagctttgtcatatctacattcatatgcctcaatacccatcatccatagagatgtcaagagtg |
1868668 |
T |
|
| Q |
159 |
ataacattctcttagatggaaccaacaccgccaaagtgtcagattttggagcttcaagattg |
220 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
1868669 |
ataacattctcttagatagaaccaacaccgccaaagtatcggattttggagcttcaagattg |
1868730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 59 - 220
Target Start/End: Original strand, 1842960 - 1843121
Alignment:
| Q |
59 |
tggaagactcgtcttaagatagccgcagaggtagctgaggctctgtcatatctacattcatatgcctcaacacccatcatccatagagatgtcaagagtg |
158 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| || |||||||||||||||||||||| |
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| T |
1842960 |
tggaaaactcgtcttaagatagccgcagaggtagctgaaactttgtcatatctacattcatatgcctcaataccaataatccatagagatgtcaagagtg |
1843059 |
T |
|
| Q |
159 |
ataacattctcttagatggaaccaacaccgccaaagtgtcagattttggagcttcaagattg |
220 |
Q |
| |
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||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
1843060 |
ataacattctcttagatagaaccaacacagccaaagtatcagattttggagcttcaagattg |
1843121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 220
Target Start/End: Complemental strand, 9229644 - 9229528
Alignment:
| Q |
104 |
tcatatctacattcatatgcctcaacacccatcatccatagagatgtcaagagtgataacattctcttagatggaaccaacaccgccaaagtgtcagatt |
203 |
Q |
| |
|
|||||||||||||||| ||| || ||| || ||||||||||||||||| |||| ||||||||||| |||| | |||| || |||||||| |||| |
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| T |
9229644 |
tcatatctacattcatctgcatccttaccaattatccatagagatgtcaaaagtgccaacattctcttggatgacaattacactgcaaaagtgtctgatt |
9229545 |
T |
|
| Q |
204 |
ttggagcttcaagattg |
220 |
Q |
| |
|
|||| |||||||||||| |
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| T |
9229544 |
ttggtgcttcaagattg |
9229528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 213
Target Start/End: Complemental strand, 9155935 - 9155829
Alignment:
| Q |
107 |
tatctacattcatatgcctcaacacccatcatccatagagatgtcaagagtgataacattctcttagatggaaccaacaccgccaaagtgtcagattttg |
206 |
Q |
| |
|
||||||||||||| ||| |||| ||| || ||||||||||||||||| ||| ||||||||||| |||| | |||| || ||||| || ||||||| |
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| T |
9155935 |
tatctacattcatctgcatcaataccgattatccatagagatgtcaaaagtaccaacattctcttggatgacaattacacagcgaaagtttccgattttg |
9155836 |
T |
|
| Q |
207 |
gagcttc |
213 |
Q |
| |
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||||||| |
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| T |
9155835 |
gagcttc |
9155829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 9161843 - 9161778
Alignment:
| Q |
111 |
tacattcatatgcctcaacacccatcatccatagagatgtcaagagtgataacattctcttagatg |
176 |
Q |
| |
|
||||||||| ||| |||| ||| || |||||||||||||| |||||| |||||||||||||||| |
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| T |
9161843 |
tacattcatctgcatcaatacctattatccatagagatgttaagagtaccaacattctcttagatg |
9161778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 220
Target Start/End: Complemental strand, 9170673 - 9170560
Alignment:
| Q |
107 |
tatctacattcatatgcctcaacacccatcatccatagagatgtcaagagtgataacattctcttagatggaaccaacaccgccaaagtgtcagattttg |
206 |
Q |
| |
|
||||||||||||| ||| |||| || || |||||||||||||| |||||| ||||||||||| |||| | |||| |||||||| || || || | |
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| T |
9170673 |
tatctacattcatctgcatcaattccaattatccatagagatgttaagagtaccaacattctcttggatgacaattacactgccaaagtttccgacttcg |
9170574 |
T |
|
| Q |
207 |
gagcttcaagattg |
220 |
Q |
| |
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|||||||||||||| |
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| T |
9170573 |
gagcttcaagattg |
9170560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 37572170 - 37572246
Alignment:
| Q |
1 |
tagcaatggtactctttctgaatttattcacacaaaaggtaagacgaatgatccaacttggaagactcgtcttaaga |
77 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||| ||| ||||||||||||| |
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| T |
37572170 |
tagcaatggtactctttctgaatttatacacacacaaggtaagatgaatgatccaacttagaaaactcgtcttaaga |
37572246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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