View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_high_15 (Length: 655)
Name: NF1137_high_15
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 30 - 646
Target Start/End: Complemental strand, 37934786 - 37934164
Alignment:
| Q |
30 |
tatattacatctaacaaagacatttcagaaatcaagtcaaaggg-atctgcttcctcacttcatagagactacctatcaaagacagtgcattcatcatat |
128 |
Q |
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| T |
37934786 |
tatattacatctaacaaagacatttcagaaatcaagtcaaaggggatctgcttcctcacttcatagagactaccaatcaaagacagtgcattcatcatat |
37934687 |
T |
|
| Q |
129 |
aagtataacaacaatcaaagccttttgccattaggtggagttggctacatgcatgtatcaaactattaatatgtactgtat-----attcaaattgactg |
223 |
Q |
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| T |
37934686 |
aagtataacaacaatcaaagccttttgccattaggtggagttggctacatgcatgtatcaaactattagtatgtactgtattatttattcaaattgactg |
37934587 |
T |
|
| Q |
224 |
ctctaatgagggatggttgaaaaattatgaataaagtcatgtgtggatttgggtttcaactacatctacatgtaaaatggggggtcaggaatataacaag |
323 |
Q |
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| T |
37934586 |
ctctaatgagggatggttgaaaaattatgaataaagtcatgtgtggatttgggtttcaactacatctacatgtaaaatggggggtcaggaatataacaag |
37934487 |
T |
|
| Q |
324 |
gtggactgaattacagaaagctaaatacttttccaagtcgggtttcttggatgcgaatctaggccatagtgcaagctttacgttgaagagtatatgtagt |
423 |
Q |
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| T |
37934486 |
gtggactgaattacagaaagctaaatacttttccaagtcgggtttcttggatgcgaatctaggccatagtgcaaactttacgttgaagagtatatgtagt |
37934387 |
T |
|
| Q |
424 |
tctattctgttaatttcccttggttatagatggcacattggcacaggtaatcaaatcaatgtttggactgatctccgatcaaacattgtgtcatatttaa |
523 |
Q |
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| T |
37934386 |
tctattctgttaatttcccttggttatagatggcacattggcacgggtactcaaatcaatgtttggactgatctccgatcaaacattgtgtcatatttaa |
37934287 |
T |
|
| Q |
524 |
tttgtttgatccacttaccaattcatgaaggtatgatcttgtcaattttatccttaaccaaaatgatgttgatgcagtacttcagatgtccctcaactcc |
623 |
Q |
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| T |
37934286 |
tttgtttgatccacttaccaattcatgaaggtatgatcttgtcaattttatccttaaccaaaatgatgttgatgcagtacttcagatgtccctcaactcc |
37934187 |
T |
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| Q |
624 |
cgttctgatactgatagtataat |
646 |
Q |
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| T |
37934186 |
cgttctgatactgatagcataat |
37934164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 10454902 - 10454851
Alignment:
| Q |
46 |
aagacatttcagaaatcaagtcaaagggatctgcttcctcacttcatagaga |
97 |
Q |
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|||||||| | ||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
10454902 |
aagacattgctgaaatcaagtcaaaggggtctgcttcctcactttatagaga |
10454851 |
T |
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