View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_high_156 (Length: 213)

Name: NF1137_high_156
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_high_156
NF1137_high_156
[»] chr3 (1 HSPs)
chr3 (43-194)||(24226688-24226839)
[»] chr6 (12 HSPs)
chr6 (43-194)||(30149395-30149546)
chr6 (43-194)||(24897945-24898096)
chr6 (43-179)||(29953674-29953810)
chr6 (72-179)||(29949906-29950013)
chr6 (46-194)||(24934535-24934683)
chr6 (46-194)||(24942068-24942216)
chr6 (46-194)||(24739178-24739326)
chr6 (43-191)||(30134996-30135144)
chr6 (55-194)||(30154368-30154507)
chr6 (72-194)||(30053295-30053417)
chr6 (46-194)||(21160608-21160756)
chr6 (56-194)||(30577761-30577899)
[»] scaffold0110 (1 HSPs)
scaffold0110 (43-194)||(43849-44000)
[»] chr4 (1 HSPs)
chr4 (54-194)||(44262584-44262724)
[»] chr7 (1 HSPs)
chr7 (47-135)||(13093518-13093605)


Alignment Details
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 43 - 194
Target Start/End: Complemental strand, 24226839 - 24226688
Alignment:
Q  43 tgacctctatcatgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcag 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24226839 tgacctctatcatgcatctcacctatgaaatcccaaacatcatatattctccttgatttgcaaagtccatcaattagggaattgtatgctacagtgtcag 24226740  T
Q  143 gaaccatatttttggaatgcatttctttgaaaagatttacggcttcatccac 194  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24226739 gaaccatatttttggaatgcatttctttgaaaagatttgcggcttcatccac 24226688  T

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Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 43 - 194
Target Start/End: Complemental strand, 30149546 - 30149395
Alignment:
Q  43 tgacctctatcatgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcag 142  Q
    ||||||||||||||||||||| |||| ||||||||||||||| ||| ||||||| ||||||||||||||||||| ||||||||||||| |||||||| ||    
T  30149546 tgacctctatcatgcatctcatctataaaatcccaaacatcagatactctccctaatttgcaaagtccatcaataagggaattgtatgttacagtgttag 30149447  T
Q  143 gaaccatatttttggaatgcatttctttgaaaagatttacggcttcatccac 194  Q
    ||| ||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  30149446 gaatcatatctttcgaatgcatttctttgaaaagatttacggcttcatccac 30149395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 43 - 194
Target Start/End: Complemental strand, 24898096 - 24897945
Alignment:
Q  43 tgacctctatcatgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcag 142  Q
    ||||||||||||||||| ||| |||| | ||||||||||||| ||||| |||| |||||||||||||||||||| || ||| ||||||||||| | ||||    
T  24898096 tgacctctatcatgcatatcatctataagatcccaaacatcagatattttccccgatttgcaaagtccatcaataagtgaactgtatgctacaatatcag 24897997  T
Q  143 gaaccatatttttggaatgcatttctttgaaaagatttacggcttcatccac 194  Q
    || |||| |||||  |||||| ||||||||| ||||| || |||||||||||    
T  24897996 gagccatgttttttaaatgcaattctttgaagagattgacagcttcatccac 24897945  T

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Target: chr6; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 43 - 179
Target Start/End: Original strand, 29953674 - 29953810
Alignment:
Q  43 tgacctctatcatgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcag 142  Q
    |||| ||||| |||||||||| |||| | ||||||||||||| | || |||||||||||||||||||||||||| || |||||||||| ||  || ||||    
T  29953674 tgacatctattatgcatctcatctataagatcccaaacatcagagatgctccctgatttgcaaagtccatcaataagagaattgtatgatattgtatcag 29953773  T
Q  143 gaaccatatttttggaatgcatttctttgaaaagatt 179  Q
    ||  ||||||| |||||||||| |||||||| |||||    
T  29953774 gagtcatatttctggaatgcatatctttgaagagatt 29953810  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 29949906 - 29950013
Alignment:
Q  72 atcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaaccatatttttggaatgcatttctttg 171  Q
    ||||||||||||| | ||||||||||||||||||||||||||||| || |||||||||| |||||| || |||  ||||||  |||||||||||||||||    
T  29949906 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatctggagtcatattactggaatgcatttctttg 29950005  T
Q  172 aaaagatt 179  Q
    || |||||    
T  29950006 aagagatt 29950013  T

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Target: chr6; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 46 - 194
Target Start/End: Complemental strand, 24934683 - 24934535
Alignment:
Q  46 cctctatcatgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaa 145  Q
    ||||||| ||||||||||  ||  | ||||||| ||||| | ||||||||  |||||  ||| ||||| || || |||||||||| |||||| | ||||     
T  24934683 cctctattatgcatctcatttacaagatcccaagcatcagagattctcccatatttgagaagaccatcgataagtgaattgtatgttacagtattaggag 24934584  T
Q  146 ccatatttttggaatgcatttctttgaaaagatttacggcttcatccac 194  Q
    ||||| |||||||||||||||||||||| ||||| ||||||||||||||    
T  24934583 ccatacttttggaatgcatttctttgaagagattaacggcttcatccac 24934535  T

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Target: chr6; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 46 - 194
Target Start/End: Complemental strand, 24942216 - 24942068
Alignment:
Q  46 cctctatcatgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaa 145  Q
    ||||||| |||||||||| |||| | ||||||||||||| | ||||| || |||||||||||||||||||| || ||| ||||| ||| | | ||||||     
T  24942216 cctctattatgcatctcatctataagatcccaaacatcagagattcttcccgatttgcaaagtccatcaataagcgaactgtatactataatatcaggag 24942117  T
Q  146 ccatatttttggaatgcatttctttgaaaagatttacggcttcatccac 194  Q
    |||| ||| |   ||||| ||||||||| ||||| ||||||||||||||    
T  24942116 ccatgtttcttatatgcaattctttgaagagattgacggcttcatccac 24942068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 46 - 194
Target Start/End: Original strand, 24739178 - 24739326
Alignment:
Q  46 cctctatcatgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaa 145  Q
    ||||||| ||||||||||  ||  | ||||||| ||||| | |||||||| ||||||  ||| ||||| || || ||| |||||| |||||| | ||||     
T  24739178 cctctattatgcatctcatttacaagatcccaagcatcaaagattctcccagatttgtgaagaccatcgataagtgaactgtatgttacagtattaggag 24739277  T
Q  146 ccatatttttggaatgcatttctttgaaaagatttacggcttcatccac 194  Q
    ||||| |||||||||||||||||||||  ||||| ||||||||||||||    
T  24739278 ccatacttttggaatgcatttctttgaggagattaacggcttcatccac 24739326  T

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Target: chr6; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 43 - 191
Target Start/End: Complemental strand, 30135144 - 30134996
Alignment:
Q  43 tgacctctatcatgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcag 142  Q
    |||||||| |||||||||||| |||| | ||||||||||||| |  ||||||| ||| |||||||||||||||| || ||| |||| |  |  |||||||    
T  30135144 tgacctctttcatgcatctcatctataagatcccaaacatcagaggttctccccgatatgcaaagtccatcaataagcgaagtgtacgtgaatgtgtcag 30135045  T
Q  143 gaaccatatttttggaatgcatttctttgaaaagatttacggcttcatc 191  Q
    ||  |||  |||||||||||||||| || || ||||| |||||||||||    
T  30135044 gagtcattcttttggaatgcatttcgtttaagagattcacggcttcatc 30134996  T

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Target: chr6; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 55 - 194
Target Start/End: Complemental strand, 30154507 - 30154368
Alignment:
Q  55 tgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaaccatatttt 154  Q
    ||||||||| |||| | || |||||||||| | |||||||| ||||||||||| || ||||| ||||||||||||| || ||| | ||||  || | |||    
T  30154507 tgcatctcatctataagataccaaacatcagagattctccccgatttgcaaagcccgtcaataagggaattgtatgttatagtattaggagtcaaacttt 30154408  T
Q  155 tggaatgcatttctttgaaaagatttacggcttcatccac 194  Q
    |||||||||||||||| || ||| | || |||||||||||    
T  30154407 tggaatgcatttctttaaagagaatcacagcttcatccac 30154368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 72 - 194
Target Start/End: Complemental strand, 30053417 - 30053295
Alignment:
Q  72 atcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaaccatatttttggaatgcatttctttg 171  Q
    ||||||||||||| | ||||| || |||||||||||||||||||| || ||| ||||||  ||||| | ||||  ||| |||||  ||||||||||||||    
T  30053417 atcccaaacatcagagattcttcccgatttgcaaagtccatcaataagtgaactgtatgtaacagtattaggagtcatgttttttaaatgcatttctttg 30053318  T
Q  172 aaaagatttacggcttcatccac 194  Q
    ||||| || || |||||||||||    
T  30053317 aaaagtttcacagcttcatccac 30053295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 194
Target Start/End: Original strand, 21160608 - 21160756
Alignment:
Q  46 cctctatcatgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaa 145  Q
    ||||||| ||||||||||  ||  | ||||||| ||||| | ||||||||  |||||  ||| ||||| || || |||||||||| |||| | ||||||     
T  21160608 cctctattatgcatctcatttacaagatcccaagcatcagagattctcccatatttgagaagaccatcgataagtgaattgtatgttacaatatcaggag 21160707  T
Q  146 ccatatttttggaatgcatttctttgaaaagatttacggcttcatccac 194  Q
    |||| |||||  ||||||||||||| || ||||| ||||||||||||||    
T  21160708 ccatgttttttaaatgcatttctttaaagagattaacggcttcatccac 21160756  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 30577761 - 30577899
Alignment:
Q  56 gcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaaccatattttt 155  Q
    |||||||| |||| | ||||||||||| | | ||||| ||  |||||| |||||| ||||| |||| | |||||| || ||| ||||||  |||| ||||    
T  30577761 gcatctcatctataagatcccaaacataagagattcttcccaatttgccaagtccgtcaataagggtactgtatgttatagtatcaggagtcatactttt 30577860  T
Q  156 ggaatgcatttctttgaaaagatttacggcttcatccac 194  Q
    | | ||||||||||| || ||| | || |||||||||||    
T  30577861 gaattgcatttctttaaagagaatcacagcttcatccac 30577899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 43 - 194
Target Start/End: Original strand, 43849 - 44000
Alignment:
Q  43 tgacctctatcatgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcag 142  Q
    ||||||||||||||||||||| |||| ||||||||| ||||| | ||||||||| ||||||||||||||||||||| ||||||||||| |||||||| ||    
T  43849 tgacctctatcatgcatctcatctataaaatcccaagcatcagacattctccctaatttgcaaagtccatcaattaaggaattgtatgttacagtgttag 43948  T
Q  143 gaaccatatttttggaatgcatttctttgaaaagatttacggcttcatccac 194  Q
    ||||||||||||||||||||||||||||||| ||||| || |||||||||||    
T  43949 gaaccatatttttggaatgcatttctttgaagagattaactgcttcatccac 44000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 54 - 194
Target Start/End: Original strand, 44262584 - 44262724
Alignment:
Q  54 atgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaaccatattt 153  Q
    |||||||||| |||| | ||||||||||||| ||||||| ||||||||||||||||||||||| || |||||||||| || ||| || ||| |||| |||    
T  44262584 atgcatctcatctataagatcccaaacatcagatattcttcctgatttgcaaagtccatcaataagtgaattgtatgttatagtatcgggagccatgttt 44262683  T
Q  154 ttggaatgcatttctttgaaaagatttacggcttcatccac 194  Q
    ||    |||| ||||||||| ||||| ||||||||||||||    
T  44262684 tttatttgcagttctttgaagagattgacggcttcatccac 44262724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 13093518 - 13093605
Alignment:
Q  47 ctctatcatgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctaca 135  Q
    ||||||| ||||||||| | || | ||| ||||||||||| | |||| |||||||||||||||||||||| || |||||||||| ||||    
T  13093518 ctctatcgtgcatctcatccat-agatcacaaacatcatagaatctctctgatttgcaaagtccatcaataagtgaattgtatgttaca 13093605  T

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