View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_high_20 (Length: 619)
Name: NF1137_high_20
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 76 - 591
Target Start/End: Original strand, 38024255 - 38024776
Alignment:
| Q |
76 |
ggtacaaaggtgactgaatgttttattaggctaataaatgtaaaataattgannnnnnnnnnnnnnna------gtggccggggtttgaatccggacctt |
169 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38024255 |
ggtacaaaggtgactgaatgttttattaggctaataaatgtaaaataattgattttttttaatttttttttgtggtggccggggtttgaatccggacctt |
38024354 |
T |
|
| Q |
170 |
gcatataacctattattagtacagttctaatcacattcgtgacaatggtcagaataaattcatgacctaaacatctgaaagcaccttgtattatatttgc |
269 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
38024355 |
gcatataacctattat-agtacagttctaatcacattcgtgacaatggtcagaataaattcatgacctaaacatctaaaagcaccttatattatatttgc |
38024453 |
T |
|
| Q |
270 |
aatatgcttcaannnnnnncttggaataaaatatgtttcaagctttttctggctttatatttgctgcatattcgccttccacacagttaaacgcactata |
369 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38024454 |
aatatgcttcaatttttttcttggaataaaatatgtttcaagctttttctggctttatatttgctgcatattcgccttccacacagttaaacgcactata |
38024553 |
T |
|
| Q |
370 |
cttaattttcatcccaagcaatcattagttttgtaacttaatgtaaatagaggcatataagagccgtttgagttgttgaatacaatgtgtcattatgatt |
469 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38024554 |
cttaattttcatcccaagcaatcattagttttgtaacttaatgtaaatagaagcatataagagccctttgagttgttgaatacaatgtgtcattatgatt |
38024653 |
T |
|
| Q |
470 |
agaattagaaagaaataacaacaaacaatgtcttgctgaatttgtctttcagatggacaaggctaacccattccaatggtaggaaaaggg-aaaaaatct |
568 |
Q |
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| T |
38024654 |
agaattagaaagaaataacaacaaacaatctcttgctgaatttgtctttcagatggacaaggctaacccattccaatggtaggaaaagggaaaaaaaatt |
38024753 |
T |
|
| Q |
569 |
ttacaaatctaaatcatgactat |
591 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
38024754 |
ttacaaatctaaatcatgactat |
38024776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 366 - 591
Target Start/End: Original strand, 38031002 - 38031228
Alignment:
| Q |
366 |
tatacttaattttcatcccaagcaatcattagttttgtaacttaatgtaaatagaggcatataagagccgtttgagttgttgaatacaatgtgtcattat |
465 |
Q |
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||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| | ||||||||||| |
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| T |
38031002 |
tatactttatttttatcccaagtaatcattagttttgtaacttaatgtaaatagaagcatataagagccctttgagttgttgaatgtagtgtgtcattat |
38031101 |
T |
|
| Q |
466 |
gattagaattagaaagaaataacaacaaacaatgtcttgctgaatttgtctttcagatggacaaggctaacccattccaatggtaggaaaagg-gaaaaa |
564 |
Q |
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||||||||||||||| |||||| |||||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||| |||| ||||||| ||||| |
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| T |
38031102 |
gattagaattagaaataaataataacaaacaatctcttcctgaatttgtcattcagatggacaatgctaacccattccaaaggtatgaaaaggaaaaaaa |
38031201 |
T |
|
| Q |
565 |
atctttacaaatctaaatcatgactat |
591 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
38031202 |
atctttacaaatctaaatcatgactat |
38031228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 374 - 589
Target Start/End: Original strand, 50911607 - 50911825
Alignment:
| Q |
374 |
attttcatcccaagcaatcattagttttgtaacttaatgtaaatagaggcatataagagccgtttgagttgttgaatacaatgtgtcattatgattagaa |
473 |
Q |
| |
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||||| ||||||| |||||||||||||||||||||| ||||||| ||||||| |||| |||||| ||||||||| | |||||||||||||||| |
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| T |
50911607 |
atttttatcccaaacaatcattagttttgtaactta--taaaatagaagcatatagaagccctttgaggtgttgaatatatcaagtcattatgattagaa |
50911704 |
T |
|
| Q |
474 |
ttagaaa-----gaaataacaacaaacaatgtcttgctgaatttgtctttcagatggacaaggctaacccattccaatggtaggaaaagggaaaaaatct |
568 |
Q |
| |
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|| |||| |||||| |||| ||||| |||| ||||| ||||| ||||||||||||| ||||||||||||||| || |||||| |||||||| ||| |
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| T |
50911705 |
ttggaaataaagtaaataataacatacaatctcttcctgaaattgtccttcagatggacaatgctaacccattccaaaggcaggaaaggggaaaaattct |
50911804 |
T |
|
| Q |
569 |
ttacaaatctaaatcatgact |
589 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
50911805 |
ttacaaatctaaatcatgact |
50911825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 168 - 265
Target Start/End: Original strand, 38026030 - 38026127
Alignment:
| Q |
168 |
ttgcatataacctattattagtacagttctaatcacattcgtgacaatggtcagaataaattcatgacctaaacatctgaaagcaccttgtattatat |
265 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| || |||||||||| |||||||||||||| |
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| T |
38026030 |
ttgcatataacctattattagtacagttctagtcacattcttgacaatggtcagaataaattcatgaccaaatcatctgaaagaaccttgtattatat |
38026127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 413 - 580
Target Start/End: Original strand, 38036513 - 38036685
Alignment:
| Q |
413 |
taaatagaggcatataagagccgtttgagttgttgaatacaatgtgtcattatgattagaattagaaagaaataacaacaaacaatgtcttgc----tga |
508 |
Q |
| |
|
|||||||| ||||||| || || |||||||||||||| | | | |||||||||||| ||||||| ||||| | |||||| ||| | || | ||| |
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| T |
38036513 |
taaatagaagcatataggatccaattgagttgttgaatgtattctttcattatgattatgattagaatgaaattataacaaataatttgttcctgaatga |
38036612 |
T |
|
| Q |
509 |
atttgtctttcagatggacaaggctaacccattccaatggtaggaaaagggaa-aaaatctttacaaatctaa |
580 |
Q |
| |
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||||||| ||||||||||||| ||||| |||||||| |||||||||| | || ||||||||||||||||||| |
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| T |
38036613 |
atttgtcattcagatggacaattctaacacattccaaaggtaggaaaatgaaataaaatctttacaaatctaa |
38036685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 3e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 366 - 591
Target Start/End: Original strand, 21606974 - 21607197
Alignment:
| Q |
366 |
tatacttaattttcatcccaagcaatcattagttttgtaacttaatgtaaatagaggcatataagagccgtttgagttgttgaatacaatgtgtcattat |
465 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||| | ||||||||||| |
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| T |
21606974 |
tatactttatttttatcccaagtaatcattagttttgtaactta---taaatagaagcatataagagccctttgagttgttgaatgtagtgtgtcattat |
21607070 |
T |
|
| Q |
466 |
gattagaattagaaagaaataacaacaaacaatgtcttgctgaatttgtctttcagatggacaaggctaacccattccaatggtaggaaaagg-gaaaaa |
564 |
Q |
| |
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||||||||||||||| |||||| |||||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||| |||| ||||||| ||||| |
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| T |
21607071 |
gattagaattagaaataaataataacaaacaatctcttcctgaatttgtcattcagatggacaatgctaacccattccaaaggtatgaaaaggaaaaaaa |
21607170 |
T |
|
| Q |
565 |
atctttacaaatctaaatcatgactat |
591 |
Q |
| |
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||||||||||||||||||||||||||| |
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|
| T |
21607171 |
atctttacaaatctaaatcatgactat |
21607197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 508 - 591
Target Start/End: Original strand, 21604573 - 21604657
Alignment:
| Q |
508 |
aatttgtctttcagatggacaaggctaacccattccaatggtaggaaaagggaa-aaaatctttacaaatctaaatcatgactat |
591 |
Q |
| |
|
|||||||| || | |||||||| ||||||||||||| ||||| |||| | || ||||||| ||||||||||||| |||||||| |
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|
| T |
21604573 |
aatttgtcatttaaatggacaattataacccattccaaaggtagaaaaatgaaacaaaatctatacaaatctaaatgatgactat |
21604657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 176
Target Start/End: Original strand, 3648896 - 3648929
Alignment:
| Q |
143 |
agtggccggggtttgaatccggaccttgcatata |
176 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |
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|
| T |
3648896 |
agtggccgggatttgaatccggaccttgcatata |
3648929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 176
Target Start/End: Complemental strand, 56205015 - 56204982
Alignment:
| Q |
143 |
agtggccggggtttgaatccggaccttgcatata |
176 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| |
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|
| T |
56205015 |
agtggccgaggtttgaatccggaccttgcatata |
56204982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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