View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_high_34 (Length: 532)
Name: NF1137_high_34
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_high_34 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 30 - 395
Target Start/End: Original strand, 4354040 - 4354405
Alignment:
| Q |
30 |
gttatagtactctagaaagcatgaaagaatagaaatgaaatggatggtttgtgttatcttccattattaatttgttaggtatttaaatgatatgaaatta |
129 |
Q |
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| T |
4354040 |
gttatagtactctagaaagcatgaaagaatagaaatgaaatggatggtttgtgttatcttccattattaatttgttaggtatttaaatgatatgaaatta |
4354139 |
T |
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| Q |
130 |
taaaaatgaattatttaattagtgtatacctaacaaattgtggagtacggttgatcgaatcctcccaagaggtacacagtttggtactaaaaggaatttt |
229 |
Q |
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| T |
4354140 |
taaaaatgaattttttaattagtgtatacctaacaaattgtggagtacggttgatcgaatcctcccaagaggtacacagtttggtactaaaaggaatttt |
4354239 |
T |
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| Q |
230 |
tgtttttgctttgacaaatgtactcaaaagatgattgaatcttccaattagggattaatagtatattccaatttccaatatactttgcagatatgttttg |
329 |
Q |
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| T |
4354240 |
tgtttttgctttgacaaatgtactcaaaagatgattgaatcttccaattagggattaatagtatattccaatttccaatatactttgcagatatgttttg |
4354339 |
T |
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| Q |
330 |
ttcataaatcatcataataaagctttctttctttttccttgcacatataaatatattatcattcat |
395 |
Q |
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| T |
4354340 |
ttcataaatcatcataataaagctttctttctttttccttgcacatataaatatattatcattcat |
4354405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 404 - 521
Target Start/End: Original strand, 35814467 - 35814584
Alignment:
| Q |
404 |
accactaagcaggtatgaatctcaaaaacgtagagattggaacacctttaatcaatatctcaagagtcaaaatccactagttccactatcacactgtaac |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35814467 |
accactaagcaggtatgaatctcaaaaacgtagagattggaacacctttaatcaatatctcaagagtcaaaatccactagttccactatcacactgtaac |
35814566 |
T |
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| Q |
504 |
ttcaaccatgttcttgat |
521 |
Q |
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| T |
35814567 |
ttcaaccatgttcttgat |
35814584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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