View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_high_39 (Length: 497)
Name: NF1137_high_39
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 30 - 489
Target Start/End: Original strand, 47122348 - 47122823
Alignment:
| Q |
30 |
cattttatcaaagatatcattatagtcattaccatgttggtttgatctctacttttacataatttggt-----------------taaattagttttggg |
112 |
Q |
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| T |
47122348 |
cattttatcaaagatatcattatagtcattaccatgttggtttgatctctacttttacataatttggtacttttttaaataagattaaattagttttggg |
47122447 |
T |
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| Q |
113 |
ttc-tacaaatatagtgaattttgtttttagtctttgtatccactttgtagtccatacaaatnnnnnnnntacatttttaagtccctaaacaagtgatta |
211 |
Q |
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| T |
47122448 |
ttcctacaaatatagtgaattttgtttttaatctttgtatccattttgtagtccatacaa--tacaaaaatacatttttaagtccttaaacgagtgacta |
47122545 |
T |
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| Q |
212 |
aaagtatattatttgtattctgtagtgtccatatacttctctgactcaaatatcatcctccggataaatttatataatcctttaacaaattgttttatct |
311 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47122546 |
aaagtatattatttgtattatgtagtgtccatatacttctctgactccaatgtcatcctccggataaatttatataatcctttaacaaattgttttatct |
47122645 |
T |
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| Q |
312 |
caaataaaattattttcttataaaaacttaaaaatccacatcaaattgaaaattaccttgcaagcctaagtacttataatcaaaatggtcaagaaatgat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47122646 |
caaataaaattattttcttataaaaacttaaaaatccacatcaaattgaaaattaccttgcaagcctaagtacttataatcaaaatggtcaagaaatgat |
47122745 |
T |
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| Q |
412 |
attcacacattcatataagagacgcttttgctacaagctacatttgctaatttatctttaaaatacatgtttcatctc |
489 |
Q |
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| T |
47122746 |
attcacacattcatataagagacgcttttgctacaagctacatttgctaatttatctttaatatacatgtttcatctc |
47122823 |
T |
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