View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_high_42 (Length: 485)
Name: NF1137_high_42
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 16910693 - 16910263
Alignment:
| Q |
1 |
ttttcatcatccaacggacaccccaaaataaaagctttagatgtgtcaaagatttgcaagaaaagatgctagggcgcaaaatgtaaccgggtttgaaatt |
100 |
Q |
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| T |
16910693 |
ttttcatcatccaagggacaccccaaaataaaagctttagatgtgtcaaagatttgcaagaaaagatgctagggcgcaaagtgtaaccgggtttgaaatt |
16910594 |
T |
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| Q |
101 |
caaataaagttcaagagtgaaattctcgacattatgtgacatcgcatatttcatgaccatgtccacaagttcaggttcaacgcctccttcatttcttaaa |
200 |
Q |
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| T |
16910593 |
caaataaagttcaagtgtgaaattctcgacattatgtgacatagcatatttcatgaccgcgtccacaagtttaggttcaacgcctctttcatttcttaaa |
16910494 |
T |
|
| Q |
201 |
acaatatcttgtaaagaaattgatttgtcacgatgagacagaactgaaaacacaaattgattataattcggtaagccacgagcgaatactgaattattca |
300 |
Q |
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| T |
16910493 |
acaatatcttgtaaagaaattgatttgtcacgatgagacagaactgaaaacacaaattgattataattgggtaagccacgagcgaatactgaattattca |
16910394 |
T |
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| Q |
301 |
atgcaagagtcgtgactcttcgccaaagtgtcttccatctagtagacaatacacaagtttgaacaacttgttttgtgtccataaacttcatcatattgag |
400 |
Q |
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| T |
16910393 |
atgcaagagtagtgactcttcgccaaagtgtcttccatctagtagacaatacacaagtttgaacaacttgttttgtgtccataaacttcattatattgag |
16910294 |
T |
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| Q |
401 |
caaaacagaatcacacaagtcactaagccgg |
431 |
Q |
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| T |
16910293 |
caaaacagaatcacacaagtcactaagccgg |
16910263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 50790290 - 50790383
Alignment:
| Q |
31 |
aaagctttagatgtgtcaaagatttgcaagaaaagatgctagggcgcaaaatgtaaccgggtttgaaattcaaataaagttcaagagtgaaatt |
124 |
Q |
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||||||| ||| ||||||||||| |||||||||||||||||| |||| |||||||| | || |||||| ||| || ||||||||| ||||| |
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| T |
50790290 |
aaagcttaagacatgtcaaagattgacaagaaaagatgctagggtgcaatgtgtaaccgcgcttaaaattcgaatcaacttcaagagttaaatt |
50790383 |
T |
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