View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_high_5 (Length: 812)
Name: NF1137_high_5
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 630; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 30 - 737
Target Start/End: Original strand, 28438553 - 28439260
Alignment:
| Q |
30 |
agaagaacgtgtggctttatgcaaacttggnnnnnnnnnnatgagatcctcacaggtttcaagcttaatcttctactaaaattcaagttattatttatta |
129 |
Q |
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| T |
28438553 |
agaagaacgtgtggctttatgcaaacttggttttttttttatgagatcctcacaggtttcaagcttaatcttctactaaaattcaagttattatttatta |
28438652 |
T |
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| Q |
130 |
ttttccaactccattccatgcgagtaaagcaatatatatattgttgcttgtttaccaagcaaaggagtggattccctaaaaaggtgtcaacctactgaat |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28438653 |
ttttccaactccattccatgcgagtaaagcaatatatatattgttgcttgtttaccaagcaaaggagtggattccctaaaaaggtgtcaacctactgaat |
28438752 |
T |
|
| Q |
230 |
gaaggttatctaaaagcagtgaaacccgacaatatttcagatagcctttcaattttttatggaggagtacagcaatatttaccaattaacaatttttagt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28438753 |
gaaggttatctaaaagcagtgaaacccgacaatatttcagatagcctttcaattttttatggaggagtacagcaatatttaccaattaacaatttttagt |
28438852 |
T |
|
| Q |
330 |
gtttatacgtatattgagagaaacccgataaatagtttaaattgtattacacgcccaaatagaatattaaccaagtggctcaggtgttgtcttcnnnnnn |
429 |
Q |
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| T |
28438853 |
gtttatacgtatattgagagaaacccgataaatagtttaaattgtattacacgcccaaatagaatattaaccaagtggctcaggtgttgtcttcaaaaca |
28438952 |
T |
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| Q |
430 |
nnnnnnnnnntaagtggctcaagtgttataacatccaccaaaatatgaatcgttacgaaaaacacgagtttgatttgtaaatggaacattattgattaga |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28438953 |
aaacaaaaaataagtggctcaagtgttataacatccaccaaaatatgaatcgttacgaaaaacacgagtttgatttgtaaatggaacattattgattaga |
28439052 |
T |
|
| Q |
530 |
ccgttcttatctttgattgtgtgtcttttcctaaaaaccggagagctaacgccaagaaaatatattaacgaagtatatagcccatgtaccatttgcagga |
629 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28439053 |
ccgttcttatctttgattgtgtgtcttttcctaaaaaccggagagctaacgccaagaaaatatattaacgaagtatatagcccatgtaccatttgcagga |
28439152 |
T |
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| Q |
630 |
atgataatactccaatctaattgtctacataacagaacatgaacttgtccagtcaatcgatatcttgaaatttaatgtctaacgttgtgtgtgtgaaata |
729 |
Q |
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| T |
28439153 |
atgataatactccaatctaattgtctacataacagaacatgaacttgtccagtcaatcgatatcttgaaatttaatgtctaacgttgtgtgtgtgaaata |
28439252 |
T |
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| Q |
730 |
ttgttgga |
737 |
Q |
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|||||||| |
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| T |
28439253 |
ttgttgga |
28439260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 35616400 - 35616367
Alignment:
| Q |
71 |
tgagatcctcacaggtttcaagcttaatcttcta |
104 |
Q |
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| T |
35616400 |
tgagatcctcacaggcttcaagcttaatcttcta |
35616367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 697039 - 696996
Alignment:
| Q |
165 |
atatattgttgcttgtttaccaagcaaaggagtggattccctaa |
208 |
Q |
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| T |
697039 |
atatattgttgcttatttaccaagcaaatgagtggattccctaa |
696996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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