View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_high_52 (Length: 445)

Name: NF1137_high_52
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_high_52
NF1137_high_52
[»] chr1 (2 HSPs)
chr1 (205-435)||(7382312-7382542)
chr1 (30-123)||(7382129-7382222)
[»] chr8 (2 HSPs)
chr8 (181-215)||(32134206-32134240)
chr8 (181-209)||(39505754-39505782)
[»] chr3 (1 HSPs)
chr3 (181-214)||(4658173-4658206)
[»] chr2 (1 HSPs)
chr2 (181-214)||(45154885-45154918)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 205 - 435
Target Start/End: Original strand, 7382312 - 7382542
Alignment:
Q  205 tactatatttagttttcttaacacgtgtcttgagggcagaagttaacttttccctaaaacttataatgatgtaacgtgattatgtcaaacatatggggta 304  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  7382312 tactatatttagttttcttaacacgtgccttgagggcacaagttaacttttcactaaaacttataatgatgtaacgtgattatgtcaaacgtatggggta 7382411  T
Q  305 aattttaacattcttaaatattatggccggatctaattcgactttaaaaaaccgatggcttgatgtgtgaatataaaatgtagatgatctaataacgaaa 404  Q
    |||||||||||||||||||||||||| | |||||||||| |||||||||||| | ||||||||  |||||||||||||||||| ||||||||||||||||    
T  7382412 aattttaacattcttaaatattatggtccgatctaattcaactttaaaaaactggtggcttgacctgtgaatataaaatgtaggtgatctaataacgaaa 7382511  T
Q  405 gactaatataccaggtgactcaatatattct 435  Q
    |||||||||| ||||||||||||||||||||    
T  7382512 gactaatatagcaggtgactcaatatattct 7382542  T

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Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 7382129 - 7382222
Alignment:
Q  30 gaaaccacaataaattttgatgaaatcataatgattttgtagaacccattttattgtaaaatttagggtcatgcttagggcacaagttaagaac 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7382129 gaaaccacaataaattttgatgaaatcataatgattttgtagaacccattttattgtaaaatttagggtcatgcttagggcacaagttaagaac 7382222  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 215
Target Start/End: Complemental strand, 32134240 - 32134206
Alignment:
Q  181 agatgttaaatgcacaatttccaatactatattta 215  Q
    ||||||||||||||||||||| |||||||||||||    
T  32134240 agatgttaaatgcacaatttctaatactatattta 32134206  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 209
Target Start/End: Original strand, 39505754 - 39505782
Alignment:
Q  181 agatgttaaatgcacaatttccaatacta 209  Q
    |||||||||||||||||||||||||||||    
T  39505754 agatgttaaatgcacaatttccaatacta 39505782  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 4658173 - 4658206
Alignment:
Q  181 agatgttaaatgcacaatttccaatactatattt 214  Q
    |||||||||| |||||||||||||||||||||||    
T  4658173 agatgttaaaagcacaatttccaatactatattt 4658206  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 45154885 - 45154918
Alignment:
Q  181 agatgttaaatgcacaatttccaatactatattt 214  Q
    |||||||||||||| |||||||||||||||||||    
T  45154885 agatgttaaatgcataatttccaatactatattt 45154918  T

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