View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_high_66 (Length: 393)
Name: NF1137_high_66
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_high_66 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 4e-88; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 184 - 385
Target Start/End: Complemental strand, 17088670 - 17088470
Alignment:
| Q |
184 |
ggaagagtcttctaattttaggtaaaaattctgttaattgacttnnnnnnncataatttaaaatcaaaaataagttcaccatcccaaagaaaagaggcaa |
283 |
Q |
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| T |
17088670 |
ggaagagtctcttaattttaggtaaaaat-ctgttaattgactttaaaaaacataatttaaaatcaaaaataagttcaccatcccaaagaaaagaggcaa |
17088572 |
T |
|
| Q |
284 |
ctctctaattttttctagagcactttatgatgatactaacacagaactacaagacctgaataggagcatagggaggcatagatcatgcaaatcacagtta |
383 |
Q |
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| T |
17088571 |
ctctctaattttttctagagcactttatgatgatactaacacagaactacaagacctgaataggagcatagggaggcatagatcatgcaaatcacagtta |
17088472 |
T |
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| Q |
384 |
tc |
385 |
Q |
| |
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|| |
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| T |
17088471 |
tc |
17088470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 17088716 - 17088667
Alignment:
| Q |
91 |
tccaaacaaatgaacacttcatttcaaatttataagctctagccatggaa |
140 |
Q |
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| T |
17088716 |
tccaaacaaatgaacacttcatttcaaatttataagctctagccatggaa |
17088667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 17088801 - 17088760
Alignment:
| Q |
11 |
caaaggataccagcaacaaaaaattaagatccgaacaaacat |
52 |
Q |
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| T |
17088801 |
caaaggatatcaacaacaaaaaattaagatccaaacaaacat |
17088760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 124 - 330
Target Start/End: Complemental strand, 26633761 - 26633554
Alignment:
| Q |
124 |
aagctctagccatggaaagctggtcatgacatgaacttaatttttcaatttaaaaggatgggaagagtcttctaattttaggtaaaaattctgttaattg |
223 |
Q |
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| T |
26633761 |
aagctatagccatggaaaactgtttatgacatgaacttaatttttcaatttaagaggatcagaggaatattttaatttgagataaaaattcatttacttg |
26633662 |
T |
|
| Q |
224 |
acttnnnnnnncataatttaaaatcaaaaataagttcaccatcccaaagaaaagaggcaa--ctctctaattttttctagagcactttatgatgatacta |
321 |
Q |
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| T |
26633661 |
acctaaaaaa-cacaatttaaaataaaaaataagttcaccatcccaaagaaaagaggtaactctctctaattttctccagagcacttgatgattatacta |
26633563 |
T |
|
| Q |
322 |
acacagaac |
330 |
Q |
| |
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|||||||| |
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|
| T |
26633562 |
gcacagaac |
26633554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 124 - 330
Target Start/End: Complemental strand, 26739737 - 26739530
Alignment:
| Q |
124 |
aagctctagccatggaaagctggtcatgacatgaacttaatttttcaatttaaaaggatgggaagagtcttctaattttaggtaaaaattctgttaattg |
223 |
Q |
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| T |
26739737 |
aagctatagccatggaaaactgtttatgacatgaacttaatttttcaatttaagaggatcagaggaatattttaatttgagataaaaattcatttacttg |
26739638 |
T |
|
| Q |
224 |
acttnnnnnnncataatttaaaatcaaaaataagttcaccatcccaaagaaaagaggcaa--ctctctaattttttctagagcactttatgatgatacta |
321 |
Q |
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| T |
26739637 |
acctaaaaaa-cacaatttaaaataaaaaataagttcaccatcccaaagaaaagaggtaactctctctaattttctccagagcacttgatgattatacta |
26739539 |
T |
|
| Q |
322 |
acacagaac |
330 |
Q |
| |
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|||||||| |
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|
| T |
26739538 |
gcacagaac |
26739530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 119 - 285
Target Start/End: Original strand, 27701553 - 27701720
Alignment:
| Q |
119 |
tttataagctctagccatggaaagctggtcatgacatgaacttaatttttcaatttaaaaggatgggaagagtcttctaattttaggtaaaaattctgtt |
218 |
Q |
| |
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|||| ||||| |||||||||||| |||||||||||||||||||||||||| || |||| ||||| || || | || |||||| |||||||||||| || |
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| T |
27701553 |
tttacaagctatagccatggaaaactggtcatgacatgaacttaatttttgaaattaagaggatcagaggaatgttttaatttgaggtaaaaattcattt |
27701652 |
T |
|
| Q |
219 |
aattgacttnnnnnnncataatttaaaatcaaaaataagttcacc--atcccaaagaaaagaggcaact |
285 |
Q |
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||||||||| || |||||||| ||||||||||||||| ||||||||||||||||| |||| |
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| T |
27701653 |
aattgactt-aaaaaacacgctttaaaatgaaaaataagttcaccatatcccaaagaaaagaggtaact |
27701720 |
T |
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