View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_high_71 (Length: 369)
Name: NF1137_high_71
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_high_71 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 9026654 - 9026292
Alignment:
| Q |
1 |
ggcaccaatattttttcttgttttgtttgcttagtatcaatatgaaattatatatacttatctgcatatgcatat------ctaataaaaagctatagtc |
94 |
Q |
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| T |
9026654 |
ggcaccaatattttttattgttttgtttgcttagtatcaatatgaaattatatatacttatctgcatatgcatatgcatatctaataaaaagctatagtc |
9026555 |
T |
|
| Q |
95 |
atattaaaataatgtgagcttgataatatgggagggcaaggatataatataaagatcaaatatgataagaaaataccaaggtgcacacaaaaaatcatat |
194 |
Q |
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| T |
9026554 |
atattaaaataatgtgagcttgataatatgggagggcaaggatatgatataaagatcaaatatgataagaaaataccaaggtgcacacaaaaaatcatat |
9026455 |
T |
|
| Q |
195 |
gatataattgtacgcacaatgtggttgtcatagtgtaaatgcgagaataatgtagagggttacccaaatataacttatctgagatgatgaatcaattatt |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| ||||||||||||||||||||| |
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| T |
9026454 |
gatataattgtacgcacaatgtggttgtcatagtgtaaatgcgagaatattgtagagggatacccaaataaaacttatttgagatgatgaatcaattatt |
9026355 |
T |
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| Q |
295 |
ttgaagcagtgtttatgaagatctgagcagcggtgaaccacataattcttcgtgttctatatt |
357 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
9026354 |
ttgaagtagtgtttatgaagatctgagcagcggtgaaccacataattcttcgtgttatatatt |
9026292 |
T |
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