View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_high_78 (Length: 357)
Name: NF1137_high_78
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_high_78 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 29 - 357
Target Start/End: Complemental strand, 22361266 - 22360938
Alignment:
| Q |
29 |
accaagtgcatcttatgttatttatgcacttatcctagacctagtccaacaaaatgtattacctctggagattcaaccattccgagtccatcatcatggt |
128 |
Q |
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| T |
22361266 |
accaagtgcatcttatgttatttatgcacttatcctagacctagtccaacaaaatgtattacctctggagattcaaccattccgagtccatcatcatggt |
22361167 |
T |
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| Q |
129 |
attcgtctgcactaggcattcctacatagatgatcagaggtaaatataaagtgtctgcatttgtctgtttcaaaagacctattgtacactaattttcata |
228 |
Q |
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| T |
22361166 |
attcgtctgcactaggcattcctgcatagatgatcagaggtaaatataaagtgtctgcatttgtctgtttcaaaagacctattgtacactaatttgcata |
22361067 |
T |
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| Q |
229 |
agacaattttttccctatttgtgttgttaaaacaatcaccttccatttctgtattttgcacaccgccatcatttcttaaatccgattcttcattagttcc |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22361066 |
agacaattttttccctatttgtgttgttaaaacaatcaccttccatttctgtattttgcacaccgccatcatttcttaaatccgattcttcattagttcc |
22360967 |
T |
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| Q |
329 |
cgattgaaacttctctttggcccatgcaa |
357 |
Q |
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| T |
22360966 |
cgattgaaacttctctttggcccatgcaa |
22360938 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 54306411 - 54306447
Alignment:
| Q |
94 |
tggagattcaaccattccgagtccatcatcatggtat |
130 |
Q |
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| T |
54306411 |
tggagattcaaccattccgattccatcatcatggtat |
54306447 |
T |
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