View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_high_80 (Length: 353)
Name: NF1137_high_80
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_high_80 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 28 - 341
Target Start/End: Complemental strand, 906694 - 906381
Alignment:
| Q |
28 |
caaaacttgcaaaaatttcaccaatattctgttaagcacatactgactggaagtgcttgacatagttgtnnnnnnntggaagtaaatagtggtaaaatca |
127 |
Q |
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| T |
906694 |
caaaacttgcaaaaatttcaccaatattctgttaagcacatactgactggaagtgcttgacatagttgtaaaaaaatggaaataaatagtggtaaaatca |
906595 |
T |
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| Q |
128 |
gcctgctttacaaaatggagcacgattggttaatcatcatcacagtgatgaaaatagcttatttgtataaatcattgatccttactagtagaaggcttac |
227 |
Q |
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| T |
906594 |
gcctgctttacaaaatggagcacgattggttaatcatcatcacagtgatgaaaatagcttatttgtataaatcattgatccttactagtagaaagcttac |
906495 |
T |
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| Q |
228 |
tgtaaacatgtacaagacaaaaatgtatacacatgacgttcaaaagttatgtaatttcaatgctaaagaagagagtgctttcctagatgaaccatgttca |
327 |
Q |
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| T |
906494 |
tgtaaacatgtacaagacaaaaatgtatacacatgccgttcaaaagttatgtaatttcaatgctaaagaagagagtgctttcctagatgaaccatgttca |
906395 |
T |
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| Q |
328 |
cttgttgcaacagc |
341 |
Q |
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| T |
906394 |
cttgttgcaacagc |
906381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 267 - 341
Target Start/End: Original strand, 894188 - 894262
Alignment:
| Q |
267 |
tcaaaagttatgtaatttcaatgctaaagaagagagtgctttcctagatgaaccatgttcacttgttgcaacagc |
341 |
Q |
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| T |
894188 |
tcaaaagttttgcaatctcgatgctaaagaagagagtgccttcttagatgaaccattttcacttgttgcaacagc |
894262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 330
Target Start/End: Complemental strand, 1717 - 1670
Alignment:
| Q |
283 |
ttcaatgctaaagaagagagtgctttcctagatgaaccatgttcactt |
330 |
Q |
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| T |
1717 |
ttcaatgctagagtagagagtgctttcctagaagaaccatgctcactt |
1670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 330
Target Start/End: Complemental strand, 33257599 - 33257552
Alignment:
| Q |
283 |
ttcaatgctaaagaagagagtgctttcctagatgaaccatgttcactt |
330 |
Q |
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| T |
33257599 |
ttcaatgctagagtagagagtgctttcctagaagaaccatgctcactt |
33257552 |
T |
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