View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_high_86 (Length: 339)
Name: NF1137_high_86
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_high_86 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 84 - 316
Target Start/End: Original strand, 36184068 - 36184302
Alignment:
| Q |
84 |
caattcacaattaaatcaattcttcgtttctgcaatcaattcttctttaacagtttgggatgtgcctccgttgccagccgtgcctttctggt-ttgatgc |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||| ||| ||| |
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| T |
36184068 |
caattcacaattaaatcaattcttcgtttctgcaatcaatttttctttaacagtttgggatgtgcctctgttgccagccgtgcctttttggtcttgctgc |
36184167 |
T |
|
| Q |
183 |
tagagccggttttggcttgttgtaattctgttgttttaagctttaagcatctcctgtgctaaccgctttattaatatatgatgctt-aacaaaaaatcca |
281 |
Q |
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|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||| |
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| T |
36184168 |
tatagccggttttggcttgttgtaattatgttgttttaagctttaagcatctcctgtgctagccgctttattaatatatgatgcttaaaaaaaaaatcca |
36184267 |
T |
|
| Q |
282 |
aaaatttcatgaacatgaatatgatgatgataatt |
316 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
36184268 |
aaaatttcatgaacatgaatatgatgatgataatt |
36184302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 84 - 316
Target Start/End: Complemental strand, 50037141 - 50036912
Alignment:
| Q |
84 |
caattcacaattaaatcaattcttcgtttctgcaatcaattcttctttaacagtttgggatgtgcctccgttgccagccgtgcctttctggt-ttgatgc |
182 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| |
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| T |
50037141 |
caattcacaattaaatcaattcttcgtttctgcaatcaattcttctttaacagtttgggatgtgcctctgttgccagccgtgcctttctggtcttgctgc |
50037042 |
T |
|
| Q |
183 |
tagagccggttttggcttgttgtaattctgttgttttaagctttaagcatctcctgtgctaaccgctttattaatatatgatgctt-aacaaaaaatcca |
281 |
Q |
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| T |
50037041 |
tagagtcggttttggcttgttgtaattctgttgttttaagctttaagca-----tttgctagccgctttattaatatatgatgcttaaaaaaaaaatcca |
50036947 |
T |
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| Q |
282 |
aaaatttcatgaacatgaatatgatgatgataatt |
316 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
50036946 |
aaaatttcatgaacatgaatatgatgatgataatt |
50036912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 74
Target Start/End: Original strand, 36184015 - 36184046
Alignment:
| Q |
43 |
atttgtgattcaaaattgaaacttagaatagg |
74 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
36184015 |
atttgtgattcaaaattgaaacttagaatagg |
36184046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 316
Target Start/End: Complemental strand, 14011850 - 14011809
Alignment:
| Q |
275 |
aaatccaaaaatttcatgaacatgaatatgatgatgataatt |
316 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14011850 |
aaatccaaaaatttcatgaacatgaacatgatgatgataatt |
14011809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 316
Target Start/End: Complemental strand, 17597074 - 17597033
Alignment:
| Q |
275 |
aaatccaaaaatttcatgaacatgaatatgatgatgataatt |
316 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||| |
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|
| T |
17597074 |
aaatccaaaaatttcatgaacgtgaacatgatgatgataatt |
17597033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 316
Target Start/End: Complemental strand, 14456634 - 14456593
Alignment:
| Q |
275 |
aaatccaaaaatttcatgaacatgaatatgatgatgataatt |
316 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
14456634 |
aaatccaaaaatttcatgagcatgaacatgatgatgataatt |
14456593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 74
Target Start/End: Complemental strand, 48578084 - 48578053
Alignment:
| Q |
43 |
atttgtgattcaaaattgaaacttagaatagg |
74 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
48578084 |
atttgtgattcaaaattgaaacttagaatagg |
48578053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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