View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_high_89 (Length: 336)

Name: NF1137_high_89
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_high_89
NF1137_high_89
[»] chr8 (1 HSPs)
chr8 (89-319)||(32701675-32701905)
[»] chr6 (1 HSPs)
chr6 (89-268)||(3957600-3957779)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 89 - 319
Target Start/End: Original strand, 32701675 - 32701905
Alignment:
Q  89 acaaacatggcaaggttttcgagatttcaaaacaggcacacattgtgttcggttcctcggataaacctttaatgtcggggcagtgaccgcactctgccta 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32701675 acaaacatggcaaggttttcgagatttcaaaacaggcacacattgtgtttggttcctcggataaacctttaatgtcggggcagtgaccgcactctgccta 32701774  T
Q  189 acacattctaagccagatgatggttttgctcttgggattatgaagctgctagagagagggttggcattcattgacaatccaagcggcgtggctgatattt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32701775 acacattctaagccagatgatggttttgctcttgggattatgaagctgctagagagagggttggcattcattgacaatccaagcggcgtggctgatattt 32701874  T
Q  289 tattgtgacataaattgcaggattggttgca 319  Q
    | |||||||||||||||||||||||||||||    
T  32701875 ttttgtgacataaattgcaggattggttgca 32701905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 89 - 268
Target Start/End: Original strand, 3957600 - 3957779
Alignment:
Q  89 acaaacatggcaaggttttcgagatttcaaaacaggcacacattgtgttcggttcctcggataaacctttaatgtcggggcagtgaccgcactctgccta 188  Q
    ||||||||| | ||||||| |||||||||||||||||||| |||||||| |||| || |||||||||||||||   |||||||||  ||| |||||||||    
T  3957600 acaaacatgtcgaggtttttgagatttcaaaacaggcacagattgtgttaggttacttggataaacctttaatactggggcagtggtcgcgctctgccta 3957699  T
Q  189 acacattctaagccagatgatggttttgctcttgggattatgaagctgctagagagagggttggcattcattgacaatcc 268  Q
    ||||| | ||||||||||||  |||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||    
T  3957700 acacaatataagccagatgaaagttttgctcttgggattaggaaggtcctagagagagggttggcattcattgacaatcc 3957779  T

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