View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_low_1 (Length: 1254)

Name: NF1137_low_1
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_low_1
NF1137_low_1
[»] chr3 (25 HSPs)
chr3 (178-1184)||(12088706-12089705)
chr3 (527-894)||(33140278-33140645)
chr3 (552-878)||(46163837-46164162)
chr3 (526-779)||(32808267-32808524)
chr3 (56-168)||(12089959-12090072)
chr3 (552-878)||(3157679-3158004)
chr3 (557-894)||(45708469-45708807)
chr3 (527-789)||(26244858-26245119)
chr3 (644-884)||(55213977-55214217)
chr3 (527-778)||(2051586-2051835)
chr3 (552-789)||(26121976-26122213)
chr3 (826-894)||(12089289-12089357)
chr3 (697-894)||(36012582-36012780)
chr3 (643-776)||(43031238-43031374)
chr3 (757-894)||(33140505-33140643)
chr3 (527-622)||(36012686-36012782)
chr3 (828-894)||(26244860-26244926)
chr3 (552-621)||(46163844-46163914)
chr3 (757-894)||(26244163-26244301)
chr3 (527-595)||(12088989-12089057)
chr3 (757-865)||(26121982-26122091)
chr3 (527-598)||(33140276-33140347)
chr3 (820-894)||(2051759-2051833)
chr3 (817-894)||(43031128-43031205)
chr3 (545-622)||(7565750-7565828)
[»] chr7 (21 HSPs)
chr7 (539-869)||(35315869-35316199)
chr7 (644-894)||(47174-47424)
chr7 (527-795)||(33189882-33190148)
chr7 (639-795)||(7511169-7511323)
chr7 (528-776)||(25658388-25658634)
chr7 (527-717)||(32047233-32047422)
chr7 (552-894)||(26073168-26073510)
chr7 (527-598)||(36642607-36642678)
chr7 (817-894)||(25658389-25658466)
chr7 (552-894)||(26096955-26097297)
chr7 (687-774)||(527541-527628)
chr7 (757-884)||(35316071-35316199)
chr7 (525-627)||(47325-47428)
chr7 (817-894)||(7511081-7511158)
chr7 (527-598)||(7511079-7511150)
chr7 (804-894)||(32047235-32047325)
chr7 (826-894)||(36642609-36642677)
chr7 (527-621)||(26073417-26073512)
chr7 (527-621)||(26097204-26097299)
chr7 (804-867)||(32056869-32056932)
chr7 (820-894)||(21297715-21297789)
[»] chr8 (23 HSPs)
chr8 (527-779)||(41480624-41480875)
chr8 (658-894)||(5074381-5074618)
chr8 (664-795)||(18385825-18385956)
chr8 (527-795)||(42950443-42950710)
chr8 (552-869)||(38225459-38225776)
chr8 (664-781)||(11732709-11732826)
chr8 (531-781)||(42027059-42027308)
chr8 (666-870)||(23488724-23488928)
chr8 (658-781)||(42373332-42373455)
chr8 (710-781)||(16997211-16997282)
chr8 (527-660)||(5074487-5074620)
chr8 (804-892)||(42027220-42027308)
chr8 (554-737)||(34153370-34153551)
chr8 (804-865)||(38225709-38225770)
chr8 (804-894)||(23488972-23489062)
chr8 (804-873)||(34153487-34153555)
chr8 (527-598)||(16997093-16997164)
chr8 (552-598)||(23488993-23489039)
chr8 (804-894)||(41480783-41480873)
chr8 (552-598)||(7905658-7905704)
chr8 (554-634)||(23488845-23488927)
chr8 (552-598)||(38225457-38225503)
chr8 (817-894)||(11732595-11732672)
[»] chr2 (13 HSPs)
chr2 (527-878)||(26407419-26407770)
chr2 (550-894)||(36937527-36937869)
chr2 (643-869)||(29469542-29469770)
chr2 (664-795)||(29166806-29166937)
chr2 (553-621)||(29469541-29469610)
chr2 (552-634)||(26407426-26407510)
chr2 (702-781)||(25961197-25961276)
chr2 (804-894)||(26407678-26407768)
chr2 (552-597)||(36937801-36937846)
chr2 (804-864)||(18143985-18144045)
chr2 (817-888)||(25961089-25961160)
chr2 (757-795)||(29469746-29469784)
chr2 (826-884)||(36937516-36937574)
[»] chr1 (17 HSPs)
chr1 (658-865)||(27133982-27134190)
chr1 (554-774)||(34535316-34535535)
chr1 (643-884)||(49784533-49784773)
chr1 (563-873)||(33321071-33321381)
chr1 (641-776)||(23329417-23329552)
chr1 (658-869)||(4067009-4067220)
chr1 (804-885)||(27133830-27133911)
chr1 (817-884)||(34535301-34535368)
chr1 (820-894)||(2464202-2464276)
chr1 (554-598)||(2464207-2464251)
chr1 (550-622)||(23329319-23329392)
chr1 (715-892)||(38208261-38208438)
chr1 (539-591)||(38208522-38208574)
chr1 (539-602)||(49784817-49784880)
chr1 (804-894)||(2464056-2464146)
chr1 (552-598)||(4067176-4067222)
chr1 (757-786)||(33321146-33321175)
[»] chr6 (12 HSPs)
chr6 (527-796)||(67339-67607)
chr6 (657-894)||(16434806-16435043)
chr6 (527-776)||(10388218-10388466)
chr6 (527-779)||(30847624-30847875)
chr6 (817-894)||(67341-67418)
chr6 (757-894)||(30847626-30847764)
chr6 (821-893)||(3687627-3687699)
chr6 (527-597)||(16434804-16434873)
chr6 (643-705)||(30122746-30122807)
chr6 (530-598)||(3687627-3687695)
chr6 (697-743)||(30122481-30122527)
chr6 (552-621)||(30122817-30122887)
[»] chr5 (7 HSPs)
chr5 (554-867)||(36150761-36151073)
chr5 (658-894)||(13932689-13932926)
chr5 (644-777)||(20730450-20730585)
chr5 (528-660)||(13932795-13932927)
chr5 (645-786)||(8999644-8999787)
chr5 (817-892)||(20730617-20730692)
chr5 (804-841)||(22843906-22843943)
[»] chr4 (30 HSPs)
chr4 (552-781)||(4872571-4872797)
chr4 (527-778)||(51103364-51103614)
chr4 (644-781)||(34932173-34932309)
chr4 (550-894)||(22886419-22886766)
chr4 (550-894)||(22938083-22938430)
chr4 (611-780)||(45302440-45302607)
chr4 (536-884)||(35251394-35251742)
chr4 (585-781)||(43049156-43049351)
chr4 (539-795)||(4892397-4892650)
chr4 (641-886)||(54511429-54511671)
chr4 (639-767)||(40681566-40681693)
chr4 (642-784)||(42077134-42077276)
chr4 (527-622)||(39864090-39864186)
chr4 (804-894)||(39864092-39864182)
chr4 (817-887)||(33611234-33611304)
chr4 (817-894)||(51103366-51103443)
chr4 (757-869)||(4892412-4892525)
chr4 (527-626)||(51103633-51103733)
chr4 (817-884)||(40681721-40681788)
chr4 (552-598)||(35004497-35004543)
chr4 (527-595)||(22886417-22886485)
chr4 (527-595)||(22938081-22938149)
chr4 (558-598)||(42077056-42077096)
chr4 (527-590)||(4892689-4892752)
chr4 (527-577)||(5808246-5808296)
chr4 (820-894)||(35004474-35004548)
chr4 (804-869)||(35251412-35251477)
chr4 (552-597)||(35251684-35251729)
chr4 (552-597)||(40681730-40681775)
chr4 (755-796)||(42077249-42077290)
[»] scaffold0024 (2 HSPs)
scaffold0024 (731-885)||(70765-70920)
scaffold0024 (552-634)||(70822-70906)
[»] scaffold0081 (1 HSPs)
scaffold0081 (643-744)||(8565-8665)


Alignment Details
Target: chr3 (Bit Score: 769; Significance: 0; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 769; E-Value: 0
Query Start/End: Original strand, 178 - 1184
Target Start/End: Complemental strand, 12089705 - 12088706
Alignment:
Q  178 ccctaaaaggcatggactttgtgtttgtccctacaatttttccctcctgtgcgttataaaaacacacggtcatacactcttaagtgcatgagaataacca 277  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  12089705 ccctaaaagacatggactttgtgtttgtccctacaatttttccctcctgtgcgttataaaaacacacggtcgtgcactcttaagtgcatgagaataacca 12089606  T
Q  278 acttgccttccccaaattagttcctaaagtaaaggatagggtcccgaagtgtggaaaatgtatttaggagttctagaagtaatttcatgaaacaatggtg 377  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12089605 acttgtcttccccaaattagttcctaaagtaaaggatagggtcccgaa---tggaaaatgtatttaggagttctagaagtaatttcatgaaacaatggtg 12089509  T
Q  378 agtctaaaaactaaagtagttaaagggaggaacatgagataatataaagagaggtatggagaggtaaattagaatagtaaatgatggcaaaggtaaatcc 477  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12089508 agtctaaaaactaaactagttaaagggaggaacatgagataatataaagagaggtatggagaggtaaattagaatagtaaatgatggcaaaggtaaatcc 12089409  T
Q  478 tctcggatgataaggagtctaaaaataattgttggataccttagtgaaggagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggt 577  Q
    | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||| ||||||||    
T  12089408 tttaggatgataaggagtctaaaaataattgttggataccttagtgaaggagtaaatcattaaatttgtccatgtttttgtaccaaattcttaaattggt 12089309  T
Q  578 tcttgactctattaataactctaaaggtccctctctttgtcaaaca-ttttcagattgattcccccgactctattagttatttttgtattttaaatcatt 676  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||| |||||    
T  12089308 tcttgactctattaataactctaaaggtccctctctttgtcaaacatttttcagattga-tcccccgactctattagttgtttttgtattttaagtcatt 12089210  T
Q  677 aacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagccattaacactcaaaatacaaaacaactaata 776  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| | ||||||||||||||||||||||||||||||||    
T  12089209 aacgtatcaaataagattctaaaggcattatgacattaaccactaaataatatccaaaagacatttaaccattaacactcaaaatacaaaacaactaata 12089110  T
Q  777 gagtcggggaccactct-gaannnnnnngacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatg 875  Q
    ||||||||||| | |||  ||       || ||| |||||||||||||| | ||||||| | ||||| |||||||||||| ||||||||||||||||||     
T  12089109 gagtcggggactaatctaaaaaaattttgataaatacatgaaccattttgaattattaataaagtcagggaccaatttaaaaatttggtacaaaaacata 12089010  T
Q  876 gactaatttaatgatttacccttagtaaaagattcaaatgaacaaggagtagaatgtaacccattaagaagaattaacggtgctaagagaagagctaaga 975  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12089009 gaccaatttaatgatttactcttagtaaaagattcaaatgaacaaggagtagaatgtaacccattaagaagaattaacggtgctaagagaagagctaaga 12088910  T
Q  976 tgaatataatttaaagtaggaaatggtgagttaaggcacaaggtaaggttagaagtaattaaaatgacggggcaaaatgttaagtttcttcttaaagtat 1075  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||   ||||||| ||||    
T  12088909 tgaatataatttaaattaggaaatggtgagttaaggcactaggtaaggttagaagtaattaaaatgatggggcgaaatgttaagt---ttcttaatgtat 12088813  T
Q  1076 atagtaaaagtttgtagtggcataattggtgtagttatatggacgtaaatggtggtggtggtgttaatatatgaggtgagactattgttaattatgatga 1175  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||    
T  12088812 atagtaaaagtttgtagtggcataactggtgtagttatatggacgtaaatggtggtggtggtgtta--atatgaggtgagactattgttaattttgatga 12088715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 5e-53
Query Start/End: Original strand, 527 - 894
Target Start/End: Complemental strand, 33140645 - 33140278
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacatt 625  Q
    |||||||||| |||||| |||  | |||||||||||||| ||||||||| |   |||||||||||||||||| ||| |||| || |||||||||||||||    
T  33140645 gagtaaatcactaaattggtccttgtctttgtaccaaatgctcaaattgatctctgactctattaataactcaaaatggtcactgtctttgtcaaacatt 33140546  T
Q  626 t-tcagattgattcccccgactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaat 724  Q
    | |||||||| |  |||||||||| ||||||||||| ||||||||| |||||||| || ||||||||||   |||||||||||| |||||||   | |||    
T  33140545 tctcagattggt--ccccgactcttttagttatttt-gtattttaagtcattaacataccaaataagatcaaaaaggcattatgtcattaacggttaaat 33140449  T
Q  725 aatattcaaaagatattgagccattaacactcaaaatacaaaacaactaatagagtcggggaccactctg-aannnnnnngacaaagacatgaaccattt 823  Q
    ||||| ||||||| ||| || |||||||||||||||||||||| |||||||| ||| |  ||||| | || ||       ||||||||||  || |||||    
T  33140448 aatatccaaaagacattaagacattaacactcaaaatacaaaataactaataaagttgatgaccaatttgaaaaatgtttgacaaagacaaaaatcattt 33140349  T
Q  824 taagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    | ||||||||| |||||||   || |||||||||||||| |||||| |||||||| || ||||||||||||    
T  33140348 tgagttattaatagagtcagaaactaatttaagaatttgatacaaagacatggaccaaattaatgatttac 33140278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 5e-50
Query Start/End: Original strand, 552 - 878
Target Start/End: Complemental strand, 46164162 - 46163837
Alignment:
Q  552 tctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacattt-tcagattgattcccccgactcta 649  Q
    |||||||| |||||||||||||| || | |||||||||||||||||| ||| |||| || |||||||||||| ||| ||| |||| |  ||| |||||||    
T  46164162 tctttgtatcaaattctcaaattagtccctgactctattaataactcaaaatggtctctgtctttgtcaaacgtttctcatattggt--ccctgactcta 46164065  T
Q  650 ttagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagccatt 749  Q
    |||||| | || | |||||||  |||||||||| |||||||||| | |||| ||||||| ||||||| ||| |||||||| ||||||| |||||||||||    
T  46164064 ttagttgtatt-gcattttaagccattaacgtaccaaataagatccaaaagacattatgccattaactactaaataatatccaaaagacattgagccatt 46163966  T
Q  750 aacactcaaaatacaaaacaactaatagagtcggggaccactctga-annnnnnngacaaagacatgaaccattttaagttattaacagagtcatggacc 848  Q
    ||||||||||||||||||||| ||||||||||  ||| || ||||| |       |||||||||| | |||||||| ||||||||| ||||||  |||||    
T  46163965 aacactcaaaatacaaaacaattaatagagtc-aggatcaatctgagaaacatttgacaaagacagggaccattttgagttattaatagagtcgcggacc 46163867  T
Q  849 aatttaagaatttggtacaaaaacatggac 878  Q
    || || ||||||||||||||| ||| ||||    
T  46163866 aaattgagaatttggtacaaagacagggac 46163837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 526 - 779
Target Start/End: Complemental strand, 32808524 - 32808267
Alignment:
Q  526 ggagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctatta--ataactctaaa-ggtccctctctttgtcaaac 622  Q
    |||||||||||  ||||| |||| | ||||||||||||| | |||||||||| |||| ||||||||  ||||||| ||| |||| || ||||||||||||    
T  32808524 ggagtaaatcaccaaattggtctctgtctttgtaccaaaatttcaaattggtccttggctctattatgataactcaaaatggtctctatctttgtcaaac 32808425  T
Q  623 attt-tcagattgattcccccgactctattagttatt--tttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccac 719  Q
     ||| |||||||| |  ||| ||||||||||||| ||  |||| |||||||  | ||||||||||||||||||| | |||| |||||||  |||||||||    
T  32808424 gtttctcagattggt--ccctgactctattagttgttgttttgcattttaagcccttaacgtatcaaataagatccaaaagacattatgctattaaccac 32808327  T
Q  720 tgaataatattcaaaagatattgagccattaacactcaaaatacaaaacaactaatagag 779  Q
    | |||||||| ||||||| ||||| | |||||||||||||||||||||||||||||||||    
T  32808326 taaataatatccaaaagacattgaactattaacactcaaaatacaaaacaactaatagag 32808267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 12090072 - 12089959
Alignment:
Q  56 aaaatgaggcaaaccctagctaaggaaaaaccaagttaaaagttgaaccgttggagaattcgaggta-gggggaaactttcatcttagggttttctaatt 154  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||    
T  12090072 aaaatgaggcaaaccctaactaaggaaaaaccaagtcaaaagttgaaccgttggagaatttgaggtacgggggaaactttcatcttagggtgttctaatt 12089973  T
Q  155 cttgatttatgagt 168  Q
     | |||||||||||    
T  12089972 gtggatttatgagt 12089959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 552 - 878
Target Start/End: Complemental strand, 3158004 - 3157679
Alignment:
Q  552 tctttgtaccaaattctcaaattggttcttgactctattaataactctaaa--ggtccctctctttgtcaaacatttt-cagattgattcccccgactct 648  Q
    |||||||| ||||||||||||||  | | ||| ||||||||||| | ||||  |||| || ||||||||||||||||| |||||||||||     |||||    
T  3158004 tctttgtatcaaattctcaaattaatccatgattctattaataaatttaaaatggtctctgtctttgtcaaacatttttcagattgattcta---actct 3157908  T
Q  649 attagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagccat 748  Q
    ||||||| |||| | ||| |||  ||||||| || |||||||||| | |||| ||||||| |||||| |||| |||||||| ||||| | ||||| ||||    
T  3157907 attagttgtttt-gcattataagccattaacataccaaataagatccaaaagacattatgtcattaatcactaaataatatccaaaaaacattgaaccat 3157809  T
Q  749 taacactcaaaatacaaaacaactaatagagtcggggaccactctga-annnnnnngacaaagacatgaaccattttaagttattaacagagtcatggac 847  Q
    |||||||||||||| ||||||| ||||||||||  |||||  ||||| |       |||||||| | |||||||||||| ||||||| ||||| ||||||    
T  3157808 taacactcaaaataaaaaacaattaatagagtc-aggaccgatctgagaaacatttgacaaagaaaagaaccattttaaattattaatagagttatggac 3157710  T
Q  848 caatttaagaatttggtacaaaaacatggac 878  Q
     ||  | ||||||||||||||| ||| ||||    
T  3157709 gaaactgagaatttggtacaaagacaaggac 3157679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 557 - 894
Target Start/End: Original strand, 45708469 - 45708807
Alignment:
Q  557 gtaccaaattctcaaattggttcttgactctattaataactctaaa--ggtccctctctttgtcaaacattt-tcagattgattcccccgactctattag 653  Q
    |||||||||| | ||||||||   | |||||||||||||||| |||  | | | | |||||||||||| ||| |||||||| |  | ||| |||||||||    
T  45708469 gtaccaaatttttaaattggtctctaactctattaataactcaaaaatgattcatgtctttgtcaaacgtttctcagattggt--ctccgtctctattag 45708566  T
Q  654 ttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagccattaaca 753  Q
    || |||| ||||||||| |||| |||||| |||||||||| | |||   |||||| ||||||| ||| ||||||||  |||||| |||||| ||||||||    
T  45708567 ttctttt-gtattttaagtcatcaacgtaccaaataagatccaaaaaaaattatgtcattaacgactaaataatatctaaaagacattgagtcattaaca 45708665  T
Q  754 ctcaaaatacaaaacaactaatagagtcggggaccactctga-annnnnnngacaaagacatgaaccattttaagttattaacagagtcatggaccaatt 852  Q
     ||||||||||||||||||||| ||||| | ||||| | |||         ||||||||||    ||||||| ||||||||||| |||||  ||||||||    
T  45708666 gtcaaaatacaaaacaactaatcgagtcagagaccaatttgaggaacgtttgacaaagacagaggccattttgagttattaacatagtcagtgaccaatt 45708765  T
Q  853 taagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    ||| | ||| ||||||| |||||||| |||||||||||||||    
T  45708766 taaaattttagtacaaagacatggaccaatttaatgatttac 45708807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 527 - 789
Target Start/End: Original strand, 26244858 - 26245119
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacatt 625  Q
    |||||||| |||||||| |||  | ||||||||||||||| | |||||||| | |||||||||||||||  | ||| |||| || ||||||||||| |||    
T  26244858 gagtaaattattaaattggtcagtgtctttgtaccaaatttttaaattggtccatgactctattaataaaacaaaatggtctctgtctttgtcaaatatt 26244957  T
Q  626 t-tcagattgattcccccgactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaat 724  Q
    | |||||||| |  |   |||||||||| || |||| ||||||||| ||| ||| ||| |||||||||| | |||  ||||||| ||||||||||| |||    
T  26244958 tatcagattggt--cagtgactctattaattgtttt-gtattttaagtcactaatgtaccaaataagatccaaaaaacattatgtcattaaccactaaat 26245054  T
Q  725 aatattcaaaagatattgagccattaacactcaaaatacaaaacaactaatagagtcggggacca 789  Q
    ||||||||||||| |||||| ||||| || ||||||||| |||||| || ||||||  |||||||    
T  26245055 aatattcaaaagacattgagtcattaccattcaaaatacgaaacaattattagagttagggacca 26245119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 644 - 884
Target Start/End: Complemental strand, 55214217 - 55213977
Alignment:
Q  644 actctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattga 743  Q
    |||||||||||| |||| |||||| || | |||||| || |||||||||||| |||| |||||||  |||||||||| |||||||| ||||||| |||||    
T  55214217 actctattagttgtttt-gtatttgaagtgattaacataccaaataagattcaaaagacattatgttattaaccactaaataatatccaaaagacattga 55214119  T
Q  744 gccattaacactcaaaatacaaaacaactaatagagtcggggaccactctga-annnnnnngacaaagacatgaaccattttaagttattaacagagtca 842  Q
      |||||||||||||||| |||||| |||||||||||||| ||||| | ||| |       ||||||||| |  |||||||| ||||||||| ||| |||    
T  55214118 atcattaacactcaaaatgcaaaaccactaatagagtcggagaccaatttgagaaacgtttgacaaagaccttgaccattttgagttattaatagattca 55214019  T
Q  843 tggaccaatttaagaatttggtacaaaaacatggactaattt 884  Q
       |||||||| | ||||||||||||| |||  |||||||||    
T  55214018 gataccaatttgaaaatttggtacaaagacagagactaattt 55213977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 527 - 778
Target Start/End: Complemental strand, 2051835 - 2051586
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacatt 625  Q
    |||||||||| |||||| ||||   | |||||| |||||| | |||||||| | ||||| |||||||||||| |||  |||||| | ||| |||||||||    
T  2051835 gagtaaatcactaaattggtctccgtttttgtatcaaatttttaaattggtccatgactttattaataactcaaaatagtccctgtttttatcaaacatt 2051736  T
Q  626 ttcagattgattcccccgactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaata 725  Q
    |||| |||| ||   || ||||||||| ||  |||||||||||||  |||||||||| |||||||||| | |||| |||||||  || ||||||| ||||    
T  2051735 ttcatattggtt--tccaactctattaatt-gttttgtattttaagccattaacgtaccaaataagatccaaaagacattatgttatcaaccactaaata 2051639  T
Q  726 atattcaaaagatattgagccattaacactcaaaatacaaaacaactaataga 778  Q
     |||  |||||  ||||| |||||||| |||||||||||||||||||||||||    
T  2051638 ttatctaaaaggcattgaaccattaaccctcaaaatacaaaacaactaataga 2051586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 552 - 789
Target Start/End: Original strand, 26121976 - 26122213
Alignment:
Q  552 tctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacattt-tcagattgattcccccgactcta 649  Q
    ||||| |||||||||||||||||||| | |||||||||||||||| | ||| |||  || |||||||||||  ||| | |||||| |  ||  |||||||    
T  26121976 tctttataccaaattctcaaattggtccatgactctattaataacacaaaatggtatctgtctttgtcaaatgtttcttagattggt--ccatgactcta 26122073  T
Q  650 ttagttatttttgtattttaaatcattaacgtatcaaataagattctaaagg-cattatgacattaaccactgaataatattcaaaagatattgagccat 748  Q
    |||||| |||| ||||||||||||||||| ||| |||||||||| | |||   || | |  ||||||||||| |||||||| ||||||| |||||| |||    
T  26122074 ttagttgtttt-gtattttaaatcattaatgtaccaaataagatccaaaaaaacactctctcattaaccactaaataatatccaaaagacattgagtcat 26122172  T
Q  749 taacactcaaaatacaaaacaactaatagagtcggggacca 789  Q
    || |||||||||||| |||||| || ||||||  |||||||    
T  26122173 taccactcaaaataccaaacaattattagagttagggacca 26122213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 9e-21
Query Start/End: Original strand, 826 - 894
Target Start/End: Original strand, 12089289 - 12089357
Alignment:
Q  826 agttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    ||||||||| ||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12089289 agttattaatagagtcaagaaccaatttaagaatttggtacaaaaacatggacaaatttaatgatttac 12089357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 697 - 894
Target Start/End: Original strand, 36012582 - 36012780
Alignment:
Q  697 aaaggcattatgacattaaccactgaataatattcaaaagatattgagccattaacactcaaaatacaaaacaactaatagagtcggggaccactctga- 795  Q
    |||| |||||||  |||||  ||| |||||||||||||||| |||||| |||||| ||||||||||||||||||||||||   || || |||| | |||     
T  36012582 aaagacattatgctattaatgactaaataatattcaaaagacattgagtcattaatactcaaaatacaaaacaactaataagatcaggaaccaatttgag 36012681  T
Q  796 annnnnnngacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    |       || ||||||| | |||||||| ||||||||| |||||||  || |||||| | ||||||||||||| |||  ||| |||||| ||||||||    
T  36012682 aaacgtttgaaaaagacagggaccattttgagttattaatagagtcagagatcaatttgataatttggtacaaagacagagaccaatttagtgatttac 36012780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 643 - 776
Target Start/End: Original strand, 43031238 - 43031374
Alignment:
Q  643 gactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattg 742  Q
    ||||||||||||| |||| | ||||||| ||||||| ||||||||||| |||| |||| |||||||  |||||||||| ||||||||   ||||||| ||    
T  43031238 gactctattagttgtttt-gcattttaagtcattaaagtatcaaataaaattcaaaagacattatgctattaaccactaaataatatcgcaaagatactg 43031336  T
Q  743 agcc----attaacactcaaaatacaaaacaactaata 776  Q
    | ||    ||||||| |||||||||||||||| |||||    
T  43031337 atccattaattaacattcaaaatacaaaacaattaata 43031374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 757 - 894
Target Start/End: Original strand, 33140505 - 33140643
Alignment:
Q  757 aaaatacaaaacaactaatagagtcggggaccactctga-annnnnnngacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaa 855  Q
    ||||||||||| |||||| |||||||||||||| ||||| |       ||||||||||   |||||||| ||||||||| |||||||  || |||||| |    
T  33140505 aaaatacaaaataactaaaagagtcggggaccaatctgagaaatgtttgacaaagacagtgaccattttgagttattaatagagtcagagatcaatttga 33140604  T
Q  856 gaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    | |||||||||||| ||| |||| |||||| ||||||||    
T  33140605 gcatttggtacaaagacaaggaccaatttagtgatttac 33140643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 527 - 622
Target Start/End: Complemental strand, 36012782 - 36012686
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaac 622  Q
    |||||||||| |||||| |||| | ||||||||||||||| |||||||| |   |||||||||||||||||| ||| ||||||| ||||| ||||||    
T  36012782 gagtaaatcactaaattggtctctgtctttgtaccaaattatcaaattgatctctgactctattaataactcaaaatggtccctgtctttttcaaac 36012686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 828 - 894
Target Start/End: Complemental strand, 26244926 - 26244860
Alignment:
Q  828 ttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    ||||||| |||||||||||||||||||| ||||||||||||| |||  ||| |||||||| ||||||    
T  26244926 ttattaatagagtcatggaccaatttaaaaatttggtacaaagacactgaccaatttaataatttac 26244860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 552 - 621
Target Start/End: Original strand, 46163844 - 46163914
Alignment:
Q  552 tctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaa 621  Q
    |||||||||||||||||||| ||||| |  ||||||||||||||||| ||| ||||||| |||||||||||    
T  46163844 tctttgtaccaaattctcaatttggtccgcgactctattaataactcaaaatggtccctgtctttgtcaaa 46163914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 757 - 894
Target Start/End: Complemental strand, 26244301 - 26244163
Alignment:
Q  757 aaaatacaaaacaactaatagagtcggggaccactctga-annnnnnngacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaa 855  Q
    |||||||||||||||||||||||||  |||||| ||||| |       ||||||||||   ||||||||  |||||||| ||||||||||| ||||||||    
T  26244301 aaaatacaaaacaactaatagagtcaaggaccaatctgagaaacattggacaaagacagagaccattttgtgttattaatagagtcatggatcaatttaa 26244202  T
Q  856 gaatttggtacaaaaacatggactaatttaatgatttac 894  Q
     |||||| |||||| |||   || |||||||| ||||||    
T  26244201 aaatttgttacaaagacagtaaccaatttaataatttac 26244163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 527 - 595
Target Start/End: Original strand, 12088989 - 12089057
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataa 595  Q
    ||||||||||||||||| |||||| | ||||||||||||| | |||||||| | ||||| |||||||||    
T  12088989 gagtaaatcattaaattggtctatgtttttgtaccaaatttttaaattggtccctgactttattaataa 12089057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 757 - 865
Target Start/End: Complemental strand, 26122091 - 26121982
Alignment:
Q  757 aaaatacaaaacaactaatagagtcggggaccactctga-annnnnnngacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaa 855  Q
    |||||||||||||||||||||||||  |||||| ||| | |       ||||||||||   ||||||||  |||||||| |||||||||||||||||| |    
T  26122091 aaaatacaaaacaactaatagagtcatggaccaatctaagaaacatttgacaaagacagataccattttgtgttattaatagagtcatggaccaatttga 26121992  T
Q  856 gaatttggta 865  Q
    ||||||||||    
T  26121991 gaatttggta 26121982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 527 - 598
Target Start/End: Original strand, 33140276 - 33140347
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactc 598  Q
    |||||||||||||| || ||| || |||||||| |||||||| ||||| |||  ||||||||||||||||||    
T  33140276 gagtaaatcattaatttggtccatgtctttgtatcaaattcttaaattagtttctgactctattaataactc 33140347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 820 - 894
Target Start/End: Original strand, 2051759 - 2051833
Alignment:
Q  820 attttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    ||||| ||||||||| | |||||||||||||||||| |||||| |||||||||   ||| |||||| ||||||||    
T  2051759 attttgagttattaataaagtcatggaccaatttaaaaatttgatacaaaaacggagaccaatttagtgatttac 2051833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 817 - 894
Target Start/End: Complemental strand, 43031205 - 43031128
Alignment:
Q  817 accattttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    |||||||||||||||||| ||||||   ||||||||||| |||||| ||||||  ||||||  ||||||| |||||||    
T  43031205 accattttaagttattaatagagtccgtgaccaatttaaaaatttgatacaaagtcatggatcaatttaacgatttac 43031128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 545 - 622
Target Start/End: Complemental strand, 7565828 - 7565750
Alignment:
Q  545 gtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaac 622  Q
    |||| ||||| |||||||||||||||| |||||    |||| |||||||||||| ||| ||||| ||||||||||||||    
T  7565828 gtctttatctctgtaccaaattctcaatttggtctacgactttattaataactcaaaatggtccatctctttgtcaaac 7565750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 3e-57; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 539 - 869
Target Start/End: Complemental strand, 35316199 - 35315869
Alignment:
Q  539 aaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacattt-tcagattgat 636  Q
    ||||| |||| | ||||||||||||||||| |||||||| | |||||||||||||||||| ||| ||||||| ||||| |||||| ||| |||||||| |    
T  35316199 aaattagtctctgtctttgtaccaaattcttaaattggtccctgactctattaataactcaaaatggtccctgtctttctcaaacgtttctcagattggt 35316100  T
Q  637 tcccccgactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaag 736  Q
      |||  |||||||||||| |||| | ||||||| |||||||||||||||||||||| | |||||||||||| ||||||||||| || ||||| ||||||    
T  35316099 --ccctaactctattagttgtttt-gcattttaagtcattaacgtatcaaataagatccaaaaggcattatgtcattaaccactaaaaaatatccaaaag 35316003  T
Q  737 atattgagccattaacactcaaaatacaaaacaactaatagagtcggggaccactctga-annnnnnngacaaagacatgaaccattttaagttattaac 835  Q
    | |||| | || ||||||||||||||||||||||||||||||||| |||| || ||||| |       |||||||||||  || ||||| |||||||||     
T  35316002 acattgggtcaataacactcaaaatacaaaacaactaatagagtcagggagcaatctgagaaacatttgacaaagacatagactattttgagttattaat 35315903  T
Q  836 agagtcatggaccaatttaagaatttggtacaaa 869  Q
    ||||||| ||||| | || | |||||||||||||    
T  35315902 agagtcagggaccgaattgacaatttggtacaaa 35315869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 644 - 894
Target Start/End: Original strand, 47174 - 47424
Alignment:
Q  644 actctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattga 743  Q
    |||||||||||| ||||  |||||||| |||||||||||||||||||||||| |||  ||||||  ||||||||||| ||||||||||||||||||||||    
T  47174 actctattagttgtttta-tattttaagtcattaacgtatcaaataagattcaaaatacattatatcattaaccactaaataatattcaaaagatattga 47272  T
Q  744 gccattaacactcaaaatacaaaacaactaatagagtcggggaccactctg-aannnnnnngacaaagacatgaaccattttaagttattaacagagtca 842  Q
    ||| ||||||||||||||||||||||||||||||| || ||||||| |||| ||       ||||||||||   | |||||| ||||||||| |||| ||    
T  47273 gccgttaacactcaaaatacaaaacaactaatagaatcagggaccaatctgaaaaatgttcgacaaagacagagatcattttgagttattaatagagaca 47372  T
Q  843 tggaccaatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
      ||||||||||| ||||||||||||| | |  ||| |||||||| ||||||    
T  47373 aagaccaatttaataatttggtacaaagatagagaccaatttaataatttac 47424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 7e-37
Query Start/End: Original strand, 527 - 795
Target Start/End: Original strand, 33189882 - 33190148
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacatt 625  Q
    ||||||| ||| ||| | |||| | |||||||||||| |||||||||||||  ||||||||||||||||||| ||| |||   | ||||| |||||  ||    
T  33189882 gagtaaaccatcaaactggtctctgtctttgtaccaacttctcaaattggtctttgactctattaataactcaaaatggtatttgtctttatcaaaagtt 33189981  T
Q  626 t-tcagattgattcccccgactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaat 724  Q
    | |||||||| |  ||| ||||||||||||| |||| | |||||||  | |||||||| |||||||||| | ||| | |||||| ||||||||||| |||    
T  33189982 tctcagattggt--ccctgactctattagttgtttt-gcattttaagcctttaacgtaccaaataagat-caaaatgtattatgccattaaccactaaat 33190077  T
Q  725 aatattcaaaagatattgagccattaacactcaaaatacaaaacaactaatagagtcggggaccactctga 795  Q
    ||||| ||||||| |||||| |||||||||| ||||||||||||||||||||||||| | ||||| |||||    
T  33190078 aatatccaaaagacattgagacattaacacttaaaatacaaaacaactaatagagtcagagaccaatctga 33190148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 639 - 795
Target Start/End: Complemental strand, 7511323 - 7511169
Alignment:
Q  639 ccccgactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagat 738  Q
    |||||| ||||||||||||||| ||||||||| |||||||||||| ||||||||||  ||| |||||||| ||||||| ||| |||||||||| |||||     
T  7511323 ccccgattctattagttatttt-gtattttaagtcattaacgtataaaataagatttaaaaagcattatgtcattaactactaaataatattc-aaagac 7511226  T
Q  739 attgagccattaacactcaaaatacaaaacaactaatagagtcggggaccactctga 795  Q
    ||||| | ||||||||| |||||||||||||| |||||||||  ||||||| |||||    
T  7511225 attgaactattaacacttaaaatacaaaacaattaatagagttagggaccaatctga 7511169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 528 - 776
Target Start/End: Original strand, 25658388 - 25658634
Alignment:
Q  528 agtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacattt 626  Q
    ||||||||| |||||| |||  |||||||||||||||||||||||||||| | ||||||| |||||||||| ||| ||||  | | |||||||||| |||    
T  25658388 agtaaatcagtaaattagtccctatctttgtaccaaattctcaaattggtccctgactctgttaataactcaaaatggtcattgtttttgtcaaacgttt 25658487  T
Q  627 -tcagattgattcccccgactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaata 725  Q
     |||||||| |  || ||||| ||||||||  |||||||||||||  || ||| ||| |||||||||| | |||  |||||||  |||| ||||| ||||    
T  25658488 atcagattgct--cctcgactttattagtt-gttttgtattttaagccactaaagtaccaaataagatccaaaacacattatgcaattatccactaaata 25658584  T
Q  726 atattcaaaagatattgagccattaacactcaaaatacaaaacaactaata 776  Q
    ||| ||||||||  ||||  ||||||||||||||||| |||||||||||||    
T  25658585 ata-tcaaaagacgttgaatcattaacactcaaaatataaaacaactaata 25658634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 527 - 717
Target Start/End: Original strand, 32047233 - 32047422
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacatt 625  Q
    ||||||||||  ||||| |||  ||||||||||||||||||||||||||||   |||||||||||||||||| ||| |||| || |||||||||||| ||    
T  32047233 gagtaaatcaccaaattggtccctatctttgtaccaaattctcaaattggtctctgactctattaataactcaaaatggtctctgtctttgtcaaacttt 32047332  T
Q  626 t-tcagattgattcccccgactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaacc 717  Q
    | ||| ||| ||| |||| ||||||||||||  |||||||||||||  |||||| ||| |||| ||| | | |||||||||||| ||||||||    
T  32047333 tctcatatt-att-ccccaactctattagtt-gttttgtattttaagccattaaggtaccaaaaaagttccaaaaggcattatgccattaacc 32047422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 552 - 894
Target Start/End: Original strand, 26073168 - 26073510
Alignment:
Q  552 tctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacattt-tcagattgattcccccgactcta 649  Q
    ||||||||||||||| ||||||||     | |||||||||||||||| ||| |||| || |||||||||||| ||| |||||||| |  ||| | |||||    
T  26073168 tctttgtaccaaattttcaaattgacctctaactctattaataactcaaaatggtcactttctttgtcaaacgtttctcagattggt--ccctgcctcta 26073265  T
Q  650 ttagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagccatt 749  Q
    |||||| |||| | |||||||  |||||||||| |||||||||| | |||||||||||  ||| ||||| | |||||||| ||||| |  ||||  |  |    
T  26073266 ttagttgtttt-gcattttaagccattaacgtaccaaataagatccaaaaggcattattccataaaccagtaaataatatccaaaacacgttgaatcgat 26073364  T
Q  750 aacactcaaaatacaaaacaactaatagagtcggggaccactctga-annnnnnngacaaagacatgaaccattttaagttattaacagagtcatggacc 848  Q
    ||||||||||||||||||||| ||||| || | | ||||| ||| | |       ||||||||||   |||||||| | ||||||| ||||||| |||||    
T  26073365 aacactcaaaatacaaaacaattaataaaggcagagaccaatctaagaaacatttgacaaagacagagaccattttgaattattaatagagtcagggacc 26073464  T
Q  849 aatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    || || | ||||||||||||| |||  ||| ||||| ||| |||||    
T  26073465 aaattgaaaatttggtacaaagacagtgaccaatttgatggtttac 26073510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 527 - 598
Target Start/End: Original strand, 36642607 - 36642678
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactc 598  Q
    ||||||||||||||||| |||| ||||||||||||||||| |||||||||| | ||||||||||||||||||    
T  36642607 gagtaaatcattaaattggtctctatctttgtaccaaattttcaaattggtccctgactctattaataactc 36642678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 817 - 894
Target Start/End: Complemental strand, 25658466 - 25658389
Alignment:
Q  817 accattttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    |||||||| ||||||||||||||||| |||||||||| ||||||||||||||| | | ||||||||||| ||||||||    
T  25658466 accattttgagttattaacagagtcagggaccaatttgagaatttggtacaaagatagggactaatttactgatttac 25658389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 552 - 894
Target Start/End: Original strand, 26096955 - 26097297
Alignment:
Q  552 tctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacattt-tcagattgattcccccgactcta 649  Q
    ||||||||||||||| ||||||||     | |||||||||||||||| ||| |||| || |||||||||||| ||| ||| |||| |  ||| | |||||    
T  26096955 tctttgtaccaaattttcaaattgacctctaactctattaataactcaaaatggtcactttctttgtcaaacgtttctcaaattggt--ccctgcctcta 26097052  T
Q  650 ttagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagccatt 749  Q
    |||||| |||| | |||||||  |||||||||| |||||||||| | |||||||||||  ||| ||||| | |||||||| ||||| |  ||||  |  |    
T  26097053 ttagttgtttt-gcattttaagccattaacgtaccaaataagatccaaaaggcattattccataaaccagtaaataatatccaaaacacgttgaatcgat 26097151  T
Q  750 aacactcaaaatacaaaacaactaatagagtcggggaccactctga-annnnnnngacaaagacatgaaccattttaagttattaacagagtcatggacc 848  Q
    ||||||||||||||||||||| ||||| || | | ||||| ||| | |       ||||||||||   |||||||| | ||||||| ||||||| |||||    
T  26097152 aacactcaaaatacaaaacaattaataaaggcagagaccaatctaagaaacatttgacaaagacagagaccattttgaattattaatagagtcagggacc 26097251  T
Q  849 aatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    || || | ||||||||||||| |||  ||| ||||| ||| |||||    
T  26097252 aaattgaaaatttggtacaaagacagtgaccaatttgatggtttac 26097297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 687 - 774
Target Start/End: Complemental strand, 527628 - 527541
Alignment:
Q  687 ataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagccattaacactcaaaatacaaaacaactaa 774  Q
    ||||||||| |||| | ||||| ||||||||||| ||||||||  |||| | |||||| |||||||||||||||||||||||||||||    
T  527628 ataagattcaaaagacgttatgtcattaaccactaaataatatctaaaaaacattgagtcattaacactcaaaatacaaaacaactaa 527541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 757 - 884
Target Start/End: Original strand, 35316071 - 35316199
Alignment:
Q  757 aaaatacaaaacaactaatagagtcggggaccactctga-annnnnnngacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaa 855  Q
    ||||| ||||||||||||||||||  ||||||| ||||| |       || ||||||| | |||||||| ||||||||| ||||||| ||||||||||||    
T  35316071 aaaatgcaaaacaactaatagagttagggaccaatctgagaaacgtttgagaaagacagggaccattttgagttattaatagagtcagggaccaatttaa 35316170  T
Q  856 gaatttggtacaaaaacatggactaattt 884  Q
    |||||||||||||| |||  |||||||||    
T  35316171 gaatttggtacaaagacagagactaattt 35316199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 525 - 627
Target Start/End: Complemental strand, 47428 - 47325
Alignment:
Q  525 aggagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaaca 623  Q
    |||||||||| |||||||| |||| ||||||||||||||||| | ||||||||  ||| ||||||||||||||| ||| | || || |||||||| ||||    
T  47428 aggagtaaattattaaattggtctctatctttgtaccaaattattaaattggtctttgtctctattaataactcaaaatgatctctgtctttgtcgaaca 47329  T
Q  624 tttt 627  Q
    ||||    
T  47328 tttt 47325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 817 - 894
Target Start/End: Complemental strand, 7511158 - 7511081
Alignment:
Q  817 accattttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    |||||||| |||||||||||||||||| ||||||||| ||||||||||||||| | | |||| ||||| ||| |||||    
T  7511158 accattttgagttattaacagagtcattgaccaatttgagaatttggtacaaagatagggaccaatttgatggtttac 7511081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 527 - 598
Target Start/End: Original strand, 7511079 - 7511150
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactc 598  Q
    ||||||| ||| ||||| |||  ||||||||||||||||||||||||||||   ||||||| ||||||||||    
T  7511079 gagtaaaccatcaaattggtccctatctttgtaccaaattctcaaattggtcaatgactctgttaataactc 7511150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 804 - 894
Target Start/End: Complemental strand, 32047325 - 32047235
Alignment:
Q  804 gacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    ||||||||||   |||||||| ||||||||| |||||||  ||||||||| ||||||||||||||| | | |||| |||||  ||||||||    
T  32047325 gacaaagacagagaccattttgagttattaatagagtcagagaccaatttgagaatttggtacaaagatagggaccaatttggtgatttac 32047235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 826 - 894
Target Start/End: Complemental strand, 36642677 - 36642609
Alignment:
Q  826 agttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    ||||||||| ||||||| |||||||||| | ||||||||||||| | |  ||| |||||||||||||||    
T  36642677 agttattaatagagtcagggaccaatttgaaaatttggtacaaagatagagaccaatttaatgatttac 36642609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 527 - 621
Target Start/End: Complemental strand, 26073512 - 26073417
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaa 621  Q
    ||||||| ||| ||||| |||  | ||||||||||||||| |||| ||||| | ||||||||||||||| || ||| |||| || |||||||||||    
T  26073512 gagtaaaccatcaaattggtcactgtctttgtaccaaattttcaatttggtccctgactctattaataattcaaaatggtctctgtctttgtcaaa 26073417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 527 - 621
Target Start/End: Complemental strand, 26097299 - 26097204
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaa 621  Q
    ||||||| ||| ||||| |||  | ||||||||||||||| |||| ||||| | ||||||||||||||| || ||| |||| || |||||||||||    
T  26097299 gagtaaaccatcaaattggtcactgtctttgtaccaaattttcaatttggtccctgactctattaataattcaaaatggtctctgtctttgtcaaa 26097204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 804 - 867
Target Start/End: Original strand, 32056869 - 32056932
Alignment:
Q  804 gacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaagaatttggtaca 867  Q
    ||||||||||  ||||||||||||||||||| | ||||  ||||||| || |||||||||||||    
T  32056869 gacaaagacagaaaccattttaagttattaataaagtccgggaccaaattgagaatttggtaca 32056932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 820 - 894
Target Start/End: Complemental strand, 21297789 - 21297715
Alignment:
Q  820 attttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    ||||| ||||||||| |||||||  ||| || |||||||||||||||||| ||| |||| ||||| ||| |||||    
T  21297789 attttgagttattaatagagtcagagactaaattaagaatttggtacaaagacagggaccaatttgatggtttac 21297715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 5e-56; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 5e-56
Query Start/End: Original strand, 527 - 779
Target Start/End: Complemental strand, 41480875 - 41480624
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacatt 625  Q
    ||||||||||| || || |||  ||||||||||||||||||||| |||| | | ||||| |||||||||||| ||| |||  || |||||||||||||||    
T  41480875 gagtaaatcatcaatttagtccctatctttgtaccaaattctcatattgttccctgactttattaataactcaaaatggttactgtctttgtcaaacatt 41480776  T
Q  626 tt-cagattgattcccccgactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaat 724  Q
    || || ||||||  ||  ||||||||||||| |||| ||||||||| ||||||||||| |||||||||||| ||||  |||||| ||||||||||| |||    
T  41480775 tttcatattgat--ccttgactctattagttgtttt-gtattttaagtcattaacgtaccaaataagattcgaaagatattatgccattaaccactaaat 41480679  T
Q  725 aatattcaaaagatattgagccattaacactcaaaatacaaaacaactaatagag 779  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  41480678 aatattcaaaagacattgagtcattaacactcaaaatacaaaacaactaatagag 41480624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 658 - 894
Target Start/End: Original strand, 5074381 - 5074618
Alignment:
Q  658 ttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagccattaacactca 757  Q
    |||||||||||||| |||||||||| |||||| |||    ||||||||||| ||||||||||  |||||||| ||||||| |||||| ||||||||||||    
T  5074381 ttttgtattttaaaccattaacgtaccaaatatgatcgagaaggcattatgccattaaccaccaaataatatccaaaagacattgagtcattaacactca 5074480  T
Q  758 aaatacaaaacaactaatagagtcggggaccactctg-aannnnnnngacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaag 856  Q
    |||||||||||||||||||||||| || |||| |||| ||       |||||||||| | |||||||| ||||||||| |||| || |||||||||| ||    
T  5074481 aaatacaaaacaactaatagagtcaggaaccaatctgaaaaacatttgacaaagacagggaccattttgagttattaatagagacagggaccaatttgag 5074580  T
Q  857 aatttggtacaaaaacatggactaatttaatgatttac 894  Q
    ||||||||||||| | |||||  ||||| ||| |||||    
T  5074581 aatttggtacaaagatatggatcaatttgatggtttac 5074618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 664 - 795
Target Start/End: Complemental strand, 18385956 - 18385825
Alignment:
Q  664 attttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagccattaacactcaaaatac 763  Q
    ||||||||||||||| ||| |||||||||||| |||| ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||| |||||||    
T  18385956 attttaaatcattaatgtaccaaataagattcaaaagacattatgtcattaaccactaaataatattcaaaagatattgagtcattaacacttaaaatac 18385857  T
Q  764 aaaacaactaatagagtcggggaccactctga 795  Q
    ||||||| |||| |||| |||||||| |||||    
T  18385856 aaaacaattaatggagttggggaccaatctga 18385825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 7e-37
Query Start/End: Original strand, 527 - 795
Target Start/End: Complemental strand, 42950710 - 42950443
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacatt 625  Q
    ||||||| ||| | ||| |||||| ||||||||  ||||| | |||| |||   |||||||||||||||||| ||| ||||  | |||||||||||||||    
T  42950710 gagtaaaccatcagattagtctatgtctttgtattaaatttttaaataggtctctgactctattaataactcaaaatggtcattgtctttgtcaaacatt 42950611  T
Q  626 t-tcagattgattcccccgactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaat 724  Q
    | ||| ||||||  | | ||||||||||||| ||||   ||||||| | |||||||||||||||||||| | |||| |||||||  |||| ||||| |||    
T  42950610 tctcatattgat--ctctgactctattagttgttttac-attttaagttattaacgtatcaaataagatccaaaagacattatgttattagccactaaat 42950514  T
Q  725 aatattcaaaagatattgagccattaacactcaaaatacaaaacaactaatagagtcggggaccactctga 795  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||| ||| |||||  ||||||| |||||    
T  42950513 aatattcaaaagacattgaaccattaacactcaaaatacaaaacaattaacagagttagggaccaatctga 42950443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 552 - 869
Target Start/End: Complemental strand, 38225776 - 38225459
Alignment:
Q  552 tctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacattt-tcagattgattcccccgactcta 649  Q
    ||||| ||||||||| |||||||||| | ||||||||||||||| |  ||| ||| | | |||||||||||||||  ||| |||| |  ||| |||||||    
T  38225776 tctttataccaaattatcaaattggtccctgactctattaataatttaaaatggttcatgtctttgtcaaacattcctcatattggt--ccctgactcta 38225679  T
Q  650 ttagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagccatt 749  Q
    ||| || |||| | ||||||| ||||| ||| | |||||| ||| | ||||| |||||| ||||||| |||||||||||| ||||||| |||||||||||    
T  38225678 ttatttgtttt-gcattttaagtcattgacgcaccaaataggatccaaaaggtattatgtcattaacaactgaataatatccaaaagacattgagccatt 38225580  T
Q  750 aacactcaaaatacaaaacaactaatagagtcggggaccactctg-aannnnnnngacaaagacatgaaccattttaagttattaacagagtcatggacc 848  Q
    |||||| ||||| ||||||||||||||||||| | ||||| |||| ||       |||||| ||    |||||||| ||||||||| ||||| | |||||    
T  38225579 aacacttaaaatgcaaaacaactaatagagtcagagaccaatctgaaaaatatttgacaaataccaagaccattttgagttattaatagagtaagggacc 38225480  T
Q  849 aatttaagaatttggtacaaa 869  Q
    || || |||||||||||||||    
T  38225479 aaattgagaatttggtacaaa 38225459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 3e-33
Query Start/End: Original strand, 664 - 781
Target Start/End: Complemental strand, 11732826 - 11732709
Alignment:
Q  664 attttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagccattaacactcaaaatac 763  Q
    |||||||  |||||||||| |||||||||| | ||| |||||||| ||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||    
T  11732826 attttaagccattaacgtaccaaataagatccaaaatgcattatgccattaaccactaaataatattcaaatgatattgagtcattaacactcaaaatac 11732727  T
Q  764 aaaacaactaatagagtc 781  Q
    |||||||| |||||||||    
T  11732726 aaaacaacaaatagagtc 11732709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 3e-33
Query Start/End: Original strand, 531 - 781
Target Start/End: Complemental strand, 42027308 - 42027059
Alignment:
Q  531 aaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacattt-tc 628  Q
    |||||| |||||| |||  | ||||| ||| ||||||| ||||||||   |||||||||||||||||  ||| ||| | | |||||||||||  ||| ||    
T  42027308 aaatcactaaattagtcattgtctttatacaaaattcttaaattggtctctgactctattaataacttaaaatggttcttgtctttgtcaaatctttctc 42027209  T
Q  629 agattgattcccccgactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataata 728  Q
    | ||||||  |||| ||||||||| ||  |||  |||||||| ||||||| |||||||||||||| | |||||||||||| ||| ||||||| |||||||    
T  42027208 aaattgat--ccccaactctattaattgattta-tattttaagtcattaatgtatcaaataagatccaaaaggcattatgtcataaaccactaaataata 42027112  T
Q  729 ttcaaaagatattgagccattaacactcaaaatacaaaacaactaatagagtc 781  Q
    | ||||||| |||||| |||||| |||||||||||||||||| ||||||||||    
T  42027111 tccaaaagacattgagtcattaaaactcaaaatacaaaacaattaatagagtc 42027059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 666 - 870
Target Start/End: Original strand, 23488724 - 23488928
Alignment:
Q  666 tttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagccattaacactcaaaatacaa 765  Q
    ||||| ||||||||||||||||||||||   |||  ||||||| || |||||||| |||||||| ||||||| |||||| ||||||||||||||||||||    
T  23488724 tttaagtcattaacgtatcaaataagatctaaaaaccattatgtcactaaccactaaataatatccaaaagacattgagtcattaacactcaaaatacaa 23488823  T
Q  766 aacaactaatagagtcggggaccactctga-annnnnnngacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaagaatttggt 864  Q
    ||| ||||||||||||  |||||| ||||| |       ||||||||||   |||||||| | ||||| | ||||||| |||||||||| ||||||||||    
T  23488824 aac-actaatagagtcaaggaccaatctgagaaatatttgacaaagacagagaccattttgaattattcatagagtcagggaccaatttgagaatttggt 23488922  T
Q  865 acaaaa 870  Q
     |||||    
T  23488923 tcaaaa 23488928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 658 - 781
Target Start/End: Original strand, 42373332 - 42373455
Alignment:
Q  658 ttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagccattaacactca 757  Q
    ||||||||||||| |||||||| |||||||||| || | |||| ||||||  ||| ||||| | ||||||||| |||| ||||||| |||||||||||||    
T  42373332 ttttgtattttaagtcattaacatatcaaataacatccaaaagacattattccatgaaccattaaataatatttaaaaaatattgaaccattaacactca 42373431  T
Q  758 aaatacaaaacaactaatagagtc 781  Q
    |||||| |||||| ||||||||||    
T  42373432 aaatactaaacaagtaatagagtc 42373455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 710 - 781
Target Start/End: Complemental strand, 16997282 - 16997211
Alignment:
Q  710 cattaaccactgaataatattcaaaagatattgagccattaacactcaaaatacaaaacaactaatagagtc 781  Q
    ||||||||||| |||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||    
T  16997282 cattaaccactaaataatattcaaaagacattgaaccattaaaactcaaaatacaaaacaactaatagagtc 16997211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 527 - 660
Target Start/End: Complemental strand, 5074620 - 5074487
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaa-cat 624  Q
    ||||||| ||| |||||  || ||||||||||||||||||||||||||||| | || ||||||||||||||| ||| ||||||| |||||||||||   |    
T  5074620 gagtaaaccatcaaattgatccatatctttgtaccaaattctcaaattggtccctgtctctattaataactcaaaatggtccctgtctttgtcaaatgtt 5074521  T
Q  625 tttcagattgattcccccgactctattagttatttt 660  Q
    |||||||||| ||  || ||||||||||||| ||||    
T  5074520 tttcagattggtt--cctgactctattagttgtttt 5074487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 804 - 892
Target Start/End: Original strand, 42027220 - 42027308
Alignment:
Q  804 gacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatgattt 892  Q
    |||||||||| |||||||||||||||||||| |||||||  ||||||||||||||||| ||| ||| |||  |||||||||| ||||||    
T  42027220 gacaaagacaagaaccattttaagttattaatagagtcagagaccaatttaagaattttgtataaagacaatgactaatttagtgattt 42027308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 554 - 737
Target Start/End: Complemental strand, 34153551 - 34153370
Alignment:
Q  554 tttgtaccaaattctcaaattggttcttgactctattaataactctaaaggtccctctctttgtcaaacattt-tcagattgattcccccgactctatta 652  Q
    ||||||||||||| ||||||||||   |||||||||||||||||| ||| |    | |||||||||||| ||| ||| |||| |||    ||||||||||    
T  34153551 tttgtaccaaattatcaaattggtctatgactctattaataactcaaaatgattatgtctttgtcaaacgtttctcaaattggttctt--gactctatta 34153454  T
Q  653 gttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaaga 737  Q
     || |||| | |||||||  |||||| |||||||||||||| | ||| |||||||| ||||||||||| |||||||| |||||||    
T  34153453 attgtttt-gcattttaagccattaatgtatcaaataagatccaaaatgcattatgccattaaccactaaataatatccaaaaga 34153370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 804 - 865
Target Start/End: Original strand, 38225709 - 38225770
Alignment:
Q  804 gacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaagaatttggta 865  Q
    ||||||||||||||||||||||| ||||||| ||||||| |||||||||| | |||||||||    
T  38225709 gacaaagacatgaaccattttaaattattaatagagtcagggaccaatttgataatttggta 38225770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 804 - 894
Target Start/End: Original strand, 23488972 - 23489062
Alignment:
Q  804 gacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    ||||||||||   |||||||| ||||||| | |||||||||||||||||| ||||||||||||||| ||| |||  |||||  ||||||||    
T  23488972 gacaaagacaatgaccattttgagttattcatagagtcatggaccaatttgagaatttggtacaaagacaaggatcaatttggtgatttac 23489062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 804 - 873
Target Start/End: Original strand, 34153487 - 34153555
Alignment:
Q  804 gacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaaca 873  Q
    ||||||||||| || |||||| ||||||||| |||||||| ||||||||| | |||||||||||||||||    
T  34153487 gacaaagacat-aatcattttgagttattaatagagtcatagaccaatttgataatttggtacaaaaaca 34153555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 527 - 598
Target Start/End: Original strand, 16997093 - 16997164
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactc 598  Q
    ||||||| ||| ||||| |||  ||||||||||||||||| |||| ||||||| | ||||||||||||||||    
T  16997093 gagtaaaccatcaaattggtccctatctttgtaccaaattatcaatttggttcctaactctattaataactc 16997164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 552 - 598
Target Start/End: Complemental strand, 23489039 - 23488993
Alignment:
Q  552 tctttgtaccaaattctcaaattggttcttgactctattaataactc 598  Q
    |||||||||||||||||||||||||| | ||||||||| ||||||||    
T  23489039 tctttgtaccaaattctcaaattggtccatgactctatgaataactc 23488993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 804 - 894
Target Start/End: Original strand, 41480783 - 41480873
Alignment:
Q  804 gacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    ||||||||||  ||||||||| ||||||||| | ||||| ||| |||| | ||||||||||||||| | | ||||||| || |||||||||    
T  41480783 gacaaagacagtaaccattttgagttattaataaagtcagggaacaatatgagaatttggtacaaagatagggactaaattgatgatttac 41480873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 552 - 598
Target Start/End: Original strand, 7905658 - 7905704
Alignment:
Q  552 tctttgtaccaaattctcaaattggttcttgactctattaataactc 598  Q
    ||||||||||||||| ||||||| || | ||||||||||||||||||    
T  7905658 tctttgtaccaaattttcaaattagtccctgactctattaataactc 7905704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 554 - 634
Target Start/End: Complemental strand, 23488927 - 23488845
Alignment:
Q  554 tttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacattt-tcagattg 634  Q
    |||| ||||||||||||||||||| | ||||||||| ||||| || ||| |||| || ||||||||||| |||| ||||||||    
T  23488927 tttgaaccaaattctcaaattggtccctgactctatgaataattcaaaatggtctctgtctttgtcaaatatttctcagattg 23488845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 552 - 598
Target Start/End: Original strand, 38225457 - 38225503
Alignment:
Q  552 tctttgtaccaaattctcaaattggttcttgactctattaataactc 598  Q
    |||||||||||||||||||| ||||| | | ||||||||||||||||    
T  38225457 tctttgtaccaaattctcaatttggtcccttactctattaataactc 38225503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 817 - 894
Target Start/End: Complemental strand, 11732672 - 11732595
Alignment:
Q  817 accattttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    |||||||| | ||||||| |||||||  |||||| || | ||||||||||||| ||||| |||||||| ||| |||||    
T  11732672 accattttgaattattaatagagtcagtgaccaaattgaaaatttggtacaaagacatgtactaatttgatggtttac 11732595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 2e-55; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 527 - 878
Target Start/End: Complemental strand, 26407770 - 26407419
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacatt 625  Q
    ||||||||||| || || |||  | ||||||||||||||| ||| |||||| | ||||||||||||||| || ||| ||||||| |||||||||| ||||    
T  26407770 gagtaaatcatcaatttagtccctgtctttgtaccaaattttcatattggtccctgactctattaataattcaaaatggtccctgtctttgtcaatcatt 26407671  T
Q  626 tt-cagattgattcccccgactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaat 724  Q
    || ||  |||||  ||  ||||||||||||| |||| ||||||||| | ||||||||| |||||||||| | ||||||||||   ||||||||||| |||    
T  26407670 tttcatgttgat--ccttgactctattagttgtttt-gtattttaagttattaacgtaccaaataagatccgaaaggcattagaccattaaccactaaat 26407574  T
Q  725 aatattcaaaagatattgagccattaacactcaaaatacaaaacaactaatagagtcggggaccactctga-annnnnnngacaaagacatgaaccattt 823  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |  |||||| ||||| |       |||||||||| | |||||||    
T  26407573 aatattcaaaagatattgaaccattaacactcaaaatacaaatcaactaatagagacatggaccaatctgagaaaagtttgacaaagacagggaccattt 26407474  T
Q  824 taagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggac 878  Q
    | ||||||||| ||||||    |||||||| | ||||||||||||| ||||||||    
T  26407473 tgagttattaatagagtctgaaaccaatttgaaaatttggtacaaagacatggac 26407419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 550 - 894
Target Start/End: Original strand, 36937527 - 36937869
Alignment:
Q  550 tatctttgtaccaaattctcaaattggttcttgactctattaataactctaaaggtccctctctttgtcaaacattt-tcagattgattcccccgactct 648  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||| || ||||  | |||||||||||||||| | |||||| | |    ||||||    
T  36937527 tatctttgtaccaaattctcaaattggtctctgactctattaataactc-aatggtctttgtctttgtcaaacatttcttagattggtactt--gactct 36937623  T
Q  649 attagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagccat 748  Q
    ||||||| |||| | |||||||  ||| |||||| |||||||||| | |||||||||||| ||||||||||| ||||||||  |||||||| |||| |||    
T  36937624 attagttgtttt-gcattttaagccatcaacgtaccaaataagatccaaaaggcattatgtcattaaccactaaataatatctaaaagatactgagtcat 36937722  T
Q  749 taacactcaaaatacaaaacaactaatagagtcggggaccactctga-annnnnnngacaaagacatgaaccattttaagttattaacagagtcatggac 847  Q
    ||||||||||||||||||||||||||||||||| |||| || | ||| |        |||||||||   |||||||| ||||||||| ||||||| ||||    
T  36937723 taacactcaaaatacaaaacaactaatagagtcagggatcaatttgagaaacatttcacaaagacagagaccattttcagttattaatagagtcaaggac 36937822  T
Q  848 caatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    ||| || ||||||||||||||| ||| | || ||||| ||| |||||    
T  36937823 caaattgagaatttggtacaaagacaagaaccaatttgatggtttac 36937869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 643 - 869
Target Start/End: Complemental strand, 29469770 - 29469542
Alignment:
Q  643 gactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattg 742  Q
    ||||||||||||| |||| ||||||||| ||||||||||||||||||||||   |||| ||||||| ||||||||||| |||||||| ||||||| ||||    
T  29469770 gactctattagttgtttt-gtattttaagtcattaacgtatcaaataagatcgaaaagacattatgtcattaaccactaaataatatccaaaagacattg 29469672  T
Q  743 agccattaacactcaaaatacaaaacaactaatagagtc--ggggaccactctga-annnnnnngacaaagacatgaaccattttaagttattaacagag 839  Q
    || ||||||||||||||||||||||||| ||||||||||  |||||| | ||||| |       ||||||||||   |||||||| ||||||||| ||||    
T  29469671 agtcattaacactcaaaatacaaaacaattaatagagtcagggggactaatctgagaaacatttgacaaagacagcgaccattttgagttattaatagag 29469572  T
Q  840 tcatggaccaatttaagaatttggtacaaa 869  Q
    |||  ||||||||| |||||||||||||||    
T  29469571 tcaatgaccaatttgagaatttggtacaaa 29469542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 664 - 795
Target Start/End: Complemental strand, 29166937 - 29166806
Alignment:
Q  664 attttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagccattaacactcaaaatac 763  Q
    ||||||| |||||||||||  ||||||||| | |||||||||||  ||||||||||| |||||||||||||||| ||| || ||||||||||| ||||||    
T  29166937 attttaagtcattaacgtactaaataagatccaaaaggcattataccattaaccactaaataatattcaaaagacattaagtcattaacactcgaaatac 29166838  T
Q  764 aaaacaactaatagagtcggggaccactctga 795  Q
    ||||||||||||||| || ||| ||| |||||    
T  29166837 aaaacaactaatagactcagggcccaatctga 29166806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 553 - 621
Target Start/End: Original strand, 29469541 - 29469610
Alignment:
Q  553 ctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaa 621  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| ||| |||| || |||||||||||    
T  29469541 ctttgtaccaaattctcaaattggtcattgactctattaataactcaaaatggtcgctgtctttgtcaaa 29469610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 552 - 634
Target Start/End: Original strand, 26407426 - 26407510
Alignment:
Q  552 tctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacattt-tcagattg 634  Q
    ||||||||||||||| |||||||||||   ||||||||||||||||| ||| ||||||| |||||||||||| ||| ||||||||    
T  26407426 tctttgtaccaaattttcaaattggtttcagactctattaataactcaaaatggtccctgtctttgtcaaacttttctcagattg 26407510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 702 - 781
Target Start/End: Complemental strand, 25961276 - 25961197
Alignment:
Q  702 cattatgacattaaccactgaataatattcaaaagatattgagccattaacactcaaaatacaaaacaactaatagagtc 781  Q
    ||||||| ||||||||||| ||||||||  |||| | ||||||||||||||||| | | |||||||||| ||||||||||    
T  25961276 cattatgtcattaaccactaaataatatctaaaaaacattgagccattaacacttacagtacaaaacaattaatagagtc 25961197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 804 - 894
Target Start/End: Original strand, 26407678 - 26407768
Alignment:
Q  804 gacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    |||||||||| | |||||||| | ||||||| ||||||| |||||||| | | ||||||||||||| ||| ||||||| || |||||||||    
T  26407678 gacaaagacagggaccattttgaattattaatagagtcagggaccaatatgaaaatttggtacaaagacagggactaaattgatgatttac 26407768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 552 - 597
Target Start/End: Complemental strand, 36937846 - 36937801
Alignment:
Q  552 tctttgtaccaaattctcaaattggttcttgactctattaataact 597  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||    
T  36937846 tctttgtaccaaattctcaatttggtccttgactctattaataact 36937801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 804 - 864
Target Start/End: Original strand, 18143985 - 18144045
Alignment:
Q  804 gacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaagaatttggt 864  Q
    |||||| |||||||||||||| ||||||||| |||||||  ||||||||||| ||||||||    
T  18143985 gacaaaaacatgaaccattttgagttattaatagagtcagagaccaatttaaaaatttggt 18144045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 817 - 888
Target Start/End: Complemental strand, 25961160 - 25961089
Alignment:
Q  817 accattttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatg 888  Q
    |||||||||||||||||| |||||||||||  ||||||||| |||  ||||||  || |||| |||||||||    
T  25961160 accattttaagttattaatagagtcatggataaatttaagattttaatacaaagtcagggaccaatttaatg 25961089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 757 - 795
Target Start/End: Original strand, 29469746 - 29469784
Alignment:
Q  757 aaaatacaaaacaactaatagagtcggggaccactctga 795  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  29469746 aaaatacaaaacaactaatagagtcagggaccaatctga 29469784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 826 - 884
Target Start/End: Complemental strand, 36937574 - 36937516
Alignment:
Q  826 agttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaattt 884  Q
    ||||||||| |||||||  ||||||||| ||||||||||||||| | | ||||||||||    
T  36937574 agttattaatagagtcagagaccaatttgagaatttggtacaaagatagggactaattt 36937516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 8e-49; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 8e-49
Query Start/End: Original strand, 658 - 865
Target Start/End: Original strand, 27133982 - 27134190
Alignment:
Q  658 ttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagccattaacactca 757  Q
    ||||| ||||||| ||||||||||| |||||||||| | |||| ||||||| ||||||||||| |||||||| ||||| | |||||| ||||||||||||    
T  27133982 ttttgcattttaagtcattaacgtaccaaataagatccaaaagacattatgccattaaccactaaataatatccaaaatacattgagtcattaacactca 27134081  T
Q  758 aaatacaaaacaactaatagagtcggggaccactctga-annnnnnngacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaag 856  Q
    |||||||||||||||||||||||| | ||||| ||||| |       ||||||||||||||||||||| ||||||||| |||||||  |||||||||||     
T  27134082 aaatacaaaacaactaatagagtcagagaccaatctgagaaacatttgacaaagacatgaaccattttgagttattaatagagtcaaagaccaatttaaa 27134181  T
Q  857 aatttggta 865  Q
    |||||||||    
T  27134182 aatttggta 27134190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 5e-44
Query Start/End: Original strand, 554 - 774
Target Start/End: Original strand, 34535316 - 34535535
Alignment:
Q  554 tttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacattt-tcagattgattcccccgactctatt 651  Q
    ||||||||||||| ||||||| || |||||||||||||||||||  ||| |||| ||   |||||||||| ||| ||| |||| |  ||| |||| ||||    
T  34535316 tttgtaccaaattttcaaattagtccttgactctattaataacttaaaatggtcactgaatttgtcaaacgtttctcaaattggt--ccctgactgtatt 34535413  T
Q  652 agttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagccattaa 751  Q
    ||||||||| | ||||||||||||||||||| |||||||||||| ||| | || ||  ||||||||||| |||||||||||||||| |||||||||||||    
T  34535414 agttatttt-gcattttaaatcattaacgtaccaaataagattcaaaaagtatcatatcattaaccactaaataatattcaaaagacattgagccattaa 34535512  T
Q  752 cactcaaaatacaaaacaactaa 774  Q
    |||||||||||||||||||||||    
T  34535513 cactcaaaatacaaaacaactaa 34535535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 643 - 884
Target Start/End: Complemental strand, 49784773 - 49784533
Alignment:
Q  643 gactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattg 742  Q
    ||||||||||||| |||||  ||||||| |||||||||||   |||||||||| |||| ||||||| |||||||||||  ||||||||||||| | ||||    
T  49784773 gactctattagttttttttacattttaagtcattaacgtacttaataagattcaaaagacattatgccattaaccactacataatattcaaaacacattg 49784674  T
Q  743 agccattaacactcaaaatacaaaacaactaatagagtcggggaccactctga-annnnnnngacaaagacatgaaccattttaagttattaacagagtc 841  Q
    | |||| |||||||||||||||||||||||||| ||||| ||||||| ||||| |       |||||||||||  |||||||| ||||||||| ||||||    
T  49784673 aaccatcaacactcaaaatacaaaacaactaattgagtcagggaccaatctgagaaacacttgacaaagacat--accattttgagttattaatagagtc 49784576  T
Q  842 atggaccaatttaagaatttggtacaaaaacatggactaattt 884  Q
    | |||| || || | ||||| ||||||| ||| ||||||||||    
T  49784575 agggactaaattgaaaatttagtacaaagacagggactaattt 49784533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 563 - 873
Target Start/End: Original strand, 33321071 - 33321381
Alignment:
Q  563 aattctcaaattggttcttgactctattaataactctaaagg-tccctctctttgtcaaacattt-tcagattgattcccccgactctattagttatttt 660  Q
    |||||||||||||||  |||||||||||||||| |  ||| | || || |||||||||||||||| | | ||||||  ||||||||||||||||| ||||    
T  33321071 aattctcaaattggtcattgactctattaataatttaaaatgatctctgtctttgtcaaacatttcttatattgat--ccccgactctattagttgtttt 33321168  T
Q  661 tgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagccattaacactcaaaa 760  Q
     ||||||||| ||||||||||| ||||||| |||| |||||||| ||| ||||||| | | |||||||| ||||||| | |||| ||||| |||||||||    
T  33321169 -gtattttaagtcattaacgtaccaaataaaattcaaaaggcatcatgtcattaacgattaaataatatccaaaagacaatgagtcattatcactcaaaa 33321267  T
Q  761 tacaaaacaactaatagagtcggggaccactctg-aannnnnnngacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaagaat 859  Q
    |||||||||| |||||||| |   ||||| | || ||       ||||||||| || || ||||| ||||||||| |||||||   |||||||||| |||    
T  33321268 tacaaaacaaataatagagacaatgaccaatttgaaaaaagtttgacaaagacgtggactattttgagttattaatagagtcagaaaccaatttaaaaat 33321367  T
Q  860 ttggtacaaaaaca 873  Q
    ||||||||||||||    
T  33321368 ttggtacaaaaaca 33321381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 641 - 776
Target Start/End: Complemental strand, 23329552 - 23329417
Alignment:
Q  641 ccgactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatat 740  Q
    |||||||||||||||  ||||||||||||||||||||| ||| |||||||||| | |||||||||||| ||||||||||| |||||||||| ||||| ||    
T  23329552 ccgactctattagtttcttttgtattttaaatcattaatgtaccaaataagatccaaaaggcattatgtcattaaccactaaataatattctaaagacat 23329453  T
Q  741 tgagccattaacactcaaaatacaaaacaactaata 776  Q
    ||| | ||||||||| ||||||||||||||||||||    
T  23329452 tgaactattaacactaaaaatacaaaacaactaata 23329417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 7e-37
Query Start/End: Original strand, 658 - 869
Target Start/End: Original strand, 4067009 - 4067220
Alignment:
Q  658 ttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagccattaacactca 757  Q
    ||||||||||||| ||||||||||| |||||||||| | |||| ||||||| |||| || ||  |||||||| ||||||| |||||||||||||||||||    
T  4067009 ttttgtattttaagtcattaacgtaccaaataagatccaaaagacattatgtcatttactacgaaataatatccaaaagacattgagccattaacactca 4067108  T
Q  758 aaatacaaaacaactaatagagtcggggaccactctga-annnnnnngacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaag 856  Q
    ||||| ||||||| ||| ||||||  |||||| ||||| |       ||||||||| || |||||||| ||||||||| |||||||  |||||||||||     
T  4067109 aaataaaaaacaattaacagagtcatggaccaatctgagaaacatttgacaaagacgtg-accattttgagttattaatagagtcaatgaccaatttaaa 4067207  T
Q  857 aatttggtacaaa 869  Q
    |||||||||||||    
T  4067208 aatttggtacaaa 4067220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 804 - 885
Target Start/End: Complemental strand, 27133911 - 27133830
Alignment:
Q  804 gacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaattta 885  Q
    |||||||||||  |||||||| ||||||||| | ||||| ||| |||||||||||||||||||||| ||| |||| ||||||    
T  27133911 gacaaagacatagaccattttgagttattaataaagtcagggatcaatttaagaatttggtacaaagacagggaccaattta 27133830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 817 - 884
Target Start/End: Complemental strand, 34535368 - 34535301
Alignment:
Q  817 accattttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaattt 884  Q
    |||||||||||||||||| ||||||| |||| ||||| | ||||||||||||||||| |||| |||||    
T  34535368 accattttaagttattaatagagtcaaggactaatttgaaaatttggtacaaaaacagggaccaattt 34535301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 820 - 894
Target Start/End: Original strand, 2464202 - 2464276
Alignment:
Q  820 attttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    ||||| ||||||||| |||||||||||||||||| ||||||||||||||| |||   ||||||||  ||||||||    
T  2464202 attttgagttattaatagagtcatggaccaatttgagaatttggtacaaatacaaaaactaatttggtgatttac 2464276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 554 - 598
Target Start/End: Complemental strand, 2464251 - 2464207
Alignment:
Q  554 tttgtaccaaattctcaaattggttcttgactctattaataactc 598  Q
    |||||||||||||||||||||||| | ||||||||||||||||||    
T  2464251 tttgtaccaaattctcaaattggtccatgactctattaataactc 2464207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 550 - 622
Target Start/End: Original strand, 23329319 - 23329392
Alignment:
Q  550 tatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaac 622  Q
    |||||||||| ||||||||||| ||||||| |||||||||||||| ||| ||| |||| || | ||||||||||    
T  23329319 tatctttgtatcaaattctcaatttggttcctgactctattaatacctcgaaatggtctctgtgtttgtcaaac 23329392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 715 - 892
Target Start/End: Complemental strand, 38208438 - 38208261
Alignment:
Q  715 accactgaataatattcaaaagatattgagccattaacactcaaaatacaaaacaactaatagagtcggggaccactctga-annnnnnngacaaagaca 813  Q
    |||||| |||||||| ||| ||| |||||| |||| ||||||||||||||||| || |||||| |||   ||||| ||||| |       |||||||| |    
T  38208438 accactaaataatatccaagagacattgagtcatttacactcaaaatacaaaataattaatagtgtcaatgaccaatctgagaaatatttgacaaagata 38208339  T
Q  814 tgaaccattttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatgattt 892  Q
    | ||||||||| |||||| || |||||||  |||||| |||| ||||| ||| ||| ||| | || |||||||||||||    
T  38208338 taaaccattttgagttatcaatagagtcagagaccaaattaaaaatttagtataaagaca-gaaccaatttaatgattt 38208261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 539 - 591
Target Start/End: Complemental strand, 38208574 - 38208522
Alignment:
Q  539 aaatttgtctatatctttgtaccaaattctcaaattggttcttgactctatta 591  Q
    ||||| |||| | |||||||||||||||||||||||||| | |||||||||||    
T  38208574 aaattggtctctgtctttgtaccaaattctcaaattggtccctgactctatta 38208522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 539 - 602
Target Start/End: Complemental strand, 49784880 - 49784817
Alignment:
Q  539 aaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa 602  Q
    ||||| ||| || |||||||||||| |||||| |||||| | |||||||||||||||||| |||    
T  49784880 aaattggtccatgtctttgtaccaagttctcatattggtccctgactctattaataactcaaaa 49784817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 804 - 894
Target Start/End: Complemental strand, 2464146 - 2464056
Alignment:
Q  804 gacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    |||||||||||||  |||||| |||||||||  |||||  ||||||| |||| ||||| ||||||| | |||||| ||||| ||| |||||    
T  2464146 gacaaagacatgagtcattttgagttattaatggagtctgggaccaaattaaaaatttagtacaaagatatggaccaatttgatggtttac 2464056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 552 - 598
Target Start/End: Complemental strand, 4067222 - 4067176
Alignment:
Q  552 tctttgtaccaaattctcaaattggttcttgactctattaataactc 598  Q
    ||||||||||||||| | ||||||||  |||||||||||||||||||    
T  4067222 tctttgtaccaaatttttaaattggtcattgactctattaataactc 4067176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 757 - 786
Target Start/End: Complemental strand, 33321175 - 33321146
Alignment:
Q  757 aaaatacaaaacaactaatagagtcgggga 786  Q
    ||||||||||||||||||||||||||||||    
T  33321175 aaaatacaaaacaactaatagagtcgggga 33321146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 5e-47; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 5e-47
Query Start/End: Original strand, 527 - 796
Target Start/End: Original strand, 67339 - 67607
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacatt 625  Q
    ||||||||||  ||||| ||| || |||||||||||||||||||||||||| | ||||| |||||||||||  ||| ||||||| | ||| |||||||||    
T  67339 gagtaaatcaccaaattggtccatgtctttgtaccaaattctcaaattggtccctgactatattaataacttaaaatggtccctgtttttatcaaacatt 67438  T
Q  626 t-tcagattgattcccccgactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaat 724  Q
    | |||||||| | || |  ||||| ||| || |||| ||||||||| ||||||| ||| |||||||||||| |||||||||| | ||| ||||||| |||    
T  67439 tctcagattggtccctc--actctgttaattgtttt-gtattttaactcattaatgtaccaaataagattcaaaaggcattaggccatcaaccactaaat 67535  T
Q  725 aatattcaaaagatattgagccattaacactcaaaatacaaaacaactaatagagtcggggaccactctgaa 796  Q
    ||||| ||||||  ||||| | ||||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  67536 aatatccaaaaggcattgatcaattaacactgaaaatacaaaacaactaatagagtcagggaccaatctgaa 67607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 657 - 894
Target Start/End: Complemental strand, 16435043 - 16434806
Alignment:
Q  657 tttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagccattaacactc 756  Q
    ||||| |||||||| ||||||||||| ||||||||||   ||| |||||||   |||||||||| |||||||| ||||| | ||||||| ||||||||||    
T  16435043 tttttatattttaagtcattaacgtaccaaataagatctaaaatgcattatactattaaccactaaataatatccaaaatacattgagctattaacactc 16434944  T
Q  757 aaaatacaaaacaactaatagagtcggggaccactctga-annnnnnngacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaa 855  Q
    |||||||||||||||||||| ||||  |||||| ||||| |       ||||||||||   |||||||| ||||||||| |||||||| ||||||||| |    
T  16434943 aaaatacaaaacaactaataaagtcaaggaccaatctgagaaatttttgacaaagacagataccatttttagttattaatagagtcat-gaccaatttga 16434845  T
Q  856 gaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    |||||||||||||| | |  ||||||||| ||| |||||    
T  16434844 gaatttggtacaaagagagagactaatttgatggtttac 16434806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 527 - 776
Target Start/End: Original strand, 10388218 - 10388466
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacatt 625  Q
    |||||||| ||||||||  ||| | ||||| ||||||||| | ||| ||||   |||||||||||||||||| ||| |||| || ||||||| |||  ||    
T  10388218 gagtaaattattaaattgatctttgtctttataccaaatttttaaactggtctctgactctattaataactcaaaatggtctctgtctttgttaaatgtt 10388317  T
Q  626 t-tcagattgattcccccgactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaat 724  Q
    | ||| |||| |  | | ||||||||||| | |||| ||||||||| ||||||| |||  ||||||||| | |||| ||||||| ||||||||||  |||    
T  10388318 tctcatattggt--ctctgactctattaggtgtttt-gtattttaagtcattaaggtactaaataagatccaaaagacattatgccattaaccacaaaat 10388414  T
Q  725 aatattcaaaagatattgagccattaacactcaaaatacaaaacaactaata 776  Q
    ||||| ||||||| |||||| |||||| ||||||||||||||||||||||||    
T  10388415 aatatccaaaagacattgagtcattaatactcaaaatacaaaacaactaata 10388466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 527 - 779
Target Start/End: Original strand, 30847624 - 30847875
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacatt 625  Q
    ||||||| ||||||||| |||||| ||||| |||||||||||  |||||||   ||| ||||||||||| |  ||| ||||||| |||||||||||| ||    
T  30847624 gagtaaaccattaaattggtctatgtctttataccaaattcttgaattggtctatgattctattaataatttaaaatggtccctatctttgtcaaacgtt 30847723  T
Q  626 t-tcagattgattcccccgactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaat 724  Q
    | |||||||| |  | |  |||||||||||| |||| ||||||||| ||||||||||| ||||||| || | |||   |||||| ||||||||||| |||    
T  30847724 tctcagattggt--ctctaactctattagttgtttt-gtattttaagtcattaacgtaccaaataaaatacaaaaaatattatgtcattaaccactaaat 30847820  T
Q  725 aatattcaaaagatattgagccattaacactcaaaatacaaaacaactaatagag 779  Q
    |  || ||||| | |||||  |||||||||| |||||||||| ||||||||||||    
T  30847821 agaatccaaaaaacattgaatcattaacacttaaaatacaaagcaactaatagag 30847875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 817 - 894
Target Start/End: Complemental strand, 67418 - 67341
Alignment:
Q  817 accattttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    |||||||||||||||||| | ||||| |||||||||| ||||||||||||||| |||||||| |||||  ||||||||    
T  67418 accattttaagttattaatatagtcagggaccaatttgagaatttggtacaaagacatggaccaatttggtgatttac 67341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 757 - 894
Target Start/End: Complemental strand, 30847764 - 30847626
Alignment:
Q  757 aaaatacaaaacaactaatagagtcggggaccactctga-annnnnnngacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaa 855  Q
    ||||||||||||||||||||||||  | ||||| ||||| |       |||||||| | | |||||||||| ||||||| ||| |||| |||||||| ||    
T  30847764 aaaatacaaaacaactaatagagttagagaccaatctgagaaacgtttgacaaagatagggaccattttaaattattaatagaatcatagaccaattcaa 30847665  T
Q  856 gaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    |||||||||| ||| |||| ||| ||||||||| |||||    
T  30847664 gaatttggtataaagacatagaccaatttaatggtttac 30847626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 821 - 893
Target Start/End: Complemental strand, 3687699 - 3687627
Alignment:
Q  821 ttttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatgattta 893  Q
    |||| ||||||||||||||||||||| |||||| |||||||| |||||| |||  ||| ||||||||||||||    
T  3687699 ttttgagttattaacagagtcatggatcaatttgagaatttgatacaaagacagagaccaatttaatgattta 3687627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 527 - 597
Target Start/End: Original strand, 16434804 - 16434873
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataact 597  Q
    ||||||| ||| ||||| |||| | ||||||||||||||||||||||||| || |||||||||||||||||    
T  16434804 gagtaaaccatcaaattagtctctctctttgtaccaaattctcaaattgg-tcatgactctattaataact 16434873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 643 - 705
Target Start/End: Complemental strand, 30122807 - 30122746
Alignment:
Q  643 gactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcatt 705  Q
    ||||||||||||| |||| | ||||||||||||||||||| |||||||||||| |||||||||    
T  30122807 gactctattagttgtttt-gcattttaaatcattaacgtaccaaataagattcaaaaggcatt 30122746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 530 - 598
Target Start/End: Original strand, 3687627 - 3687695
Alignment:
Q  530 taaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactc 598  Q
    |||||||||||||| |||| | |||||||| ||||||||||||||| | | ||||||| ||||||||||    
T  3687627 taaatcattaaattggtctctgtctttgtatcaaattctcaaattgatccatgactctgttaataactc 3687695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 697 - 743
Target Start/End: Complemental strand, 30122527 - 30122481
Alignment:
Q  697 aaaggcattatgacattaaccactgaataatattcaaaagatattga 743  Q
    |||||||||||| ||||||||||| |||||||| ||||||| |||||    
T  30122527 aaaggcattatgtcattaaccactaaataatatacaaaagacattga 30122481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 552 - 621
Target Start/End: Complemental strand, 30122887 - 30122817
Alignment:
Q  552 tctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaa 621  Q
    |||||||| ||||||||||||||||| | | ||| |||||||||||| ||| |||| || |||||||||||    
T  30122887 tctttgtatcaaattctcaaattggtccctaactttattaataactcaaaatggtctctgtctttgtcaaa 30122817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 3e-45; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 554 - 867
Target Start/End: Complemental strand, 36151073 - 36150761
Alignment:
Q  554 tttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacattt-tcagattgattcccccgactctatt 651  Q
    |||||||||||||||||||||||||| | ||||||| |||||||| ||| |||| || |||||||||||| ||| ||| ||||||  |||||||||| ||    
T  36151073 tttgtaccaaattctcaaattggttcctaactctatgaataactcaaaatggtctctgtctttgtcaaacgtttctcaaattgat--ccccgactctctt 36150976  T
Q  652 agttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagccattaa 751  Q
    |||| |||| ||||||||| ||||||| ||| |||||||||| | ||| |||||||| ||||||||||| |||||||| ||||||| |||||| || |||    
T  36150975 agttgtttt-gtattttaagtcattaatgtaccaaataagatccaaaaagcattatgccattaaccactaaataatatccaaaagacattgagtcaataa 36150877  T
Q  752 cactcaaaatacaaaacaactaatagagtcggggaccactctga-annnnnnngac-aaagacatgaaccattttaagttattaacagagtcatggacca 849  Q
    ||||| ||||||||||| |||||||||| | | ||| | ||||| |       ||| |||||||||||||||||| ||||||| | ||||| | ||||||    
T  36150876 cactc-aaatacaaaac-actaatagagccagtgacaaatctgagaaacatttgacaaaagacatgaaccattttgagttattcatagagttagggacca 36150779  T
Q  850 atttaagaatttggtaca 867  Q
    |||| ||||||| |||||    
T  36150778 atttgagaatttagtaca 36150761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 658 - 894
Target Start/End: Original strand, 13932689 - 13932926
Alignment:
Q  658 ttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagccattaacactca 757  Q
    ||||||||||||| |||||| |||| |||||||||||| |||   |||||| ||||||||||| |||| |||| ||||||||||||||||||||||||||    
T  13932689 ttttgtattttaagtcattatcgtaccaaataagattcaaaatatattatgtcattaaccactaaatagtattaaaaagatattgagccattaacactca 13932788  T
Q  758 aaatacaaaacaactaatagagtcggggaccactctga-annnnnnngacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaag 856  Q
    |||||||||| |||||||||||||| ||| || ||||| |       |||||||||||  |||||||| ||||||||| ||||||  | | |||||| ||    
T  13932789 aaatacaaaataactaatagagtcgtggatcaatctgagaaacgtttgacaaagacattgaccattttgagttattaatagagtcgagaatcaatttgag 13932888  T
Q  857 aatttggtacaaaaacatggactaatttaatgatttac 894  Q
    ||||| ||||||||| | |||| ||||| ||| |||||    
T  13932889 aatttagtacaaaaatagggaccaatttgatggtttac 13932926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 644 - 777
Target Start/End: Complemental strand, 20730585 - 20730450
Alignment:
Q  644 actctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaa---aagatat 740  Q
    |||||||||||| |||| |||||||||  ||||||||||| ||||||||| |  || |||||||| ||||||||||| |||||||| |||   |||| ||    
T  20730585 actctattagttgtttt-gtattttaagccattaacgtattaaataagatccataatgcattatgtcattaaccactaaataatatccaaaagaagacat 20730487  T
Q  741 tgagccattaacactcaaaatacaaaacaactaatag 777  Q
    ||| ||||| |||||||||||||||||||| ||||||    
T  20730486 tgaaccattgacactcaaaatacaaaacaattaatag 20730450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 528 - 660
Target Start/End: Complemental strand, 13932927 - 13932795
Alignment:
Q  528 agtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacattt 626  Q
    |||||| ||| ||||| |||  ||| ||||||| |||||||||||||| |||| ||||||||||||||||| ||| ||||  | |||||||||||| |||    
T  13932927 agtaaaccatcaaattggtccctatttttgtactaaattctcaaattgattctcgactctattaataactcaaaatggtcaatgtctttgtcaaacgttt 13932828  T
Q  627 -tcagattgattcccccgactctattagttatttt 660  Q
     ||||||||||  || |||||||||||||||||||    
T  13932827 ctcagattgat--ccacgactctattagttatttt 13932795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 645 - 786
Target Start/End: Original strand, 8999644 - 8999787
Alignment:
Q  645 ctctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgag 744  Q
    ||||||||||| |||| |||||| ||||||||| |||| ||||||| || | ||||| ||||| |||||||||| | |||||||| ||||||| |||||     
T  8999644 ctctattagttgtttt-gtatttcaaatcattaccgtaccaaataaaatccaaaaggtattataacattaaccattaaataatatccaaaagacattgaa 8999742  T
Q  745 ccattaacactcaaaatacaaaaca---actaatagagtcgggga 786  Q
    ||||||||  || ||||| ||||||   |||||||||||| ||||    
T  8999743 ccattaacgttcgaaatataaaacaacaactaatagagtcaggga 8999787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 817 - 892
Target Start/End: Original strand, 20730617 - 20730692
Alignment:
Q  817 accattttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatgattt 892  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||| ||| ||| |||| || || |||||||    
T  20730617 accattttaagttattaatagagtcatggaccaatttaagtatttggtataaagacagggaccaaattgatgattt 20730692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 804 - 841
Target Start/End: Original strand, 22843906 - 22843943
Alignment:
Q  804 gacaaagacatgaaccattttaagttattaacagagtc 841  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  22843906 gacaaagacatggaccattttaagttattaatagagtc 22843943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 3e-39; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 552 - 781
Target Start/End: Original strand, 4872571 - 4872797
Alignment:
Q  552 tctttgtaccaaattctcaaattggttcttgactctattaataactctaaagg-tccctctctttgtcaaacattttcagattgattcccccgactctat 650  Q
    ||||||||||||||||| |||||| |   | |||||||||||||||| ||| | || || |||||||||||| |||  ||||||||  ||| ||||||||    
T  4872571 tctttgtaccaaattcttaaattgatctctaactctattaataactcaaaatgatctctgtctttgtcaaacgtttctagattgat--ccctgactctat 4872668  T
Q  651 tagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagccatta 750  Q
    ||||| |||| | || |||| |||||||||||  ||||||||||| |||| |||| || ||||| ||||| |||||||| ||||||| ||||||||||||    
T  4872669 tagttgtttt-gcatattaagtcattaacgtactaaataagattcaaaagacatt-tgccattagccactaaataatatacaaaagacattgagccatta 4872766  T
Q  751 acactcaaaatacaaaacaactaatagagtc 781  Q
    |||| ||||||||||||||||||||||||||    
T  4872767 acacccaaaatacaaaacaactaatagagtc 4872797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 527 - 778
Target Start/End: Original strand, 51103364 - 51103614
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacatt 625  Q
    |||||||||| |||||| |||| | |||||||||||||||||||||||||| | ||||||||||||||| || ||| ||||  |  ||||||||||  ||    
T  51103364 gagtaaatcactaaattggtctctgtctttgtaccaaattctcaaattggtccctgactctattaataattcaaaatggtcattgcctttgtcaaaagtt 51103463  T
Q  626 t-tcagattgattcccccgactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaat 724  Q
    | || ||||| |  |  | |||||||||||| |||| ||||||||| |||||| |||| |||||||||  | |||||||||||  | | ||||||| |||    
T  51103464 tctcggattggt--cttcaactctattagttctttt-gtattttaagtcattagcgtaccaaataagacccaaaaggcattatatcctcaaccactaaat 51103560  T
Q  725 aatattcaaaagatattgagccattaacactcaaaatacaaaacaactaataga 778  Q
    ||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  51103561 aatatccaaaagacattgaaccattaacactcaaaatacaaaacaactaataga 51103614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 644 - 781
Target Start/End: Original strand, 34932173 - 34932309
Alignment:
Q  644 actctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattga 743  Q
    |||||||||||| |||| ||||||||| ||||||| |||||||||||||| | |||||||||||  ||||||||||| |||||||||||||||| |||||    
T  34932173 actctattagttctttt-gtattttaactcattaatgtatcaaataagatccaaaaggcattatatcattaaccactaaataatattcaaaagacattga 34932271  T
Q  744 gccattaacactcaaaatacaaaacaactaatagagtc 781  Q
    ||||||||||||||||||| |||  |||||||||||||    
T  34932272 gccattaacactcaaaatataaagtaactaatagagtc 34932309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 550 - 894
Target Start/End: Complemental strand, 22886766 - 22886419
Alignment:
Q  550 tatctttgtaccaaattctcaaattggttcttgactctattaataactctaaag-gtccctctctttgtcaaacattttc-agattgattcccccgactc 647  Q
    |||||||||| |||||| | ||||||||  |||||||||||||||| || |||  ||  || |||||||||||| ||||  |||||| |  |  ||||||    
T  22886766 tatctttgtatcaaatttttaaattggtctttgactctattaataattcaaaatagtttctatctttgtcaaacgttttttagattggt--cttcgactc 22886669  T
Q  648 tattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagcca 747  Q
    ||||| || |||| ||||||||| ||||||||||| |||||||||| | |||  ||||||  ||||||||||| |||||||||||||||| |||||||||    
T  22886668 tattacttgtttt-gtattttaagtcattaacgtaacaaataagatccaaaacacattatatcattaaccactaaataatattcaaaagacattgagcca 22886570  T
Q  748 ttaacactcaaaatacaaaacaactaatagagtcggggaccactctga-annnnnnngacaaagacatgaaccattttaag---ttattaacagagtcat 843  Q
    | |||||| |||||||||||||||||||||| |  | ||| | ||||| |       |||||||||| | || ||||| ||   ||||||| | |||||     
T  22886569 tgaacactaaaaatacaaaacaactaatagaattagagactaatctgagaaacatttgacaaagacaagtactattttgagttattattaataaagtcag 22886470  T
Q  844 ggaccaatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    | |||||||||||||||||||||||| ||||| || ||||| |||||||||    
T  22886469 gaaccaatttaagaatttggtacaaatacatgaaccaatttgatgatttac 22886419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 550 - 894
Target Start/End: Complemental strand, 22938430 - 22938083
Alignment:
Q  550 tatctttgtaccaaattctcaaattggttcttgactctattaataactctaaag-gtccctctctttgtcaaacattttc-agattgattcccccgactc 647  Q
    |||||||||| |||||| | ||||||||  |||||||||||||||| || |||  ||  || |||||||||||| ||||  |||||| |  |  ||||||    
T  22938430 tatctttgtatcaaatttttaaattggtctttgactctattaataattcaaaatagtttctatctttgtcaaacgttttttagattggt--cttcgactc 22938333  T
Q  648 tattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagcca 747  Q
    ||||| || |||| ||||||||| ||||||||||| |||||||||| | |||  ||||||  ||||||||||| |||||||||||||||| |||||||||    
T  22938332 tattacttgtttt-gtattttaagtcattaacgtaacaaataagatccaaaacacattatatcattaaccactaaataatattcaaaagacattgagcca 22938234  T
Q  748 ttaacactcaaaatacaaaacaactaatagagtcggggaccactctga-annnnnnngacaaagacatgaaccattttaag---ttattaacagagtcat 843  Q
    | |||||| |||||||||||||||||||||| |  | ||| | ||||| |       |||||||||| | || ||||| ||   ||||||| | |||||     
T  22938233 tgaacactaaaaatacaaaacaactaatagaattagagactaatctgagaaacatttgacaaagacaagtactattttgagttattattaataaagtcag 22938134  T
Q  844 ggaccaatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    | |||||||||||||||||||||||| ||||| || ||||| |||||||||    
T  22938133 gaaccaatttaagaatttggtacaaatacatgaaccaatttgatgatttac 22938083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 7e-37
Query Start/End: Original strand, 611 - 780
Target Start/End: Complemental strand, 45302607 - 45302440
Alignment:
Q  611 tctttgtcaaacatttt-cagattgattcccccgactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatga 709  Q
    ||||||||||||||||| || |||| |  ||| ||||||||||||| |||| | ||||||| |||||||| ||||||||||||||| ||| |||||||||    
T  45302607 tctttgtcaaacatttttcatattggt--ccctgactctattagttgtttt-gcattttaagtcattaacatatcaaataagattcaaaatgcattatga 45302511  T
Q  710 cattaaccactgaataatattcaaaagatattgagccattaacactcaaaatacaaaacaactaatagagt 780  Q
    |||||||||||||||||||| ||||||| | ||  | |||||| |||||||||||||||||||||||||||    
T  45302510 cattaaccactgaataatatccaaaagacactggactattaacgctcaaaatacaaaacaactaatagagt 45302440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 536 - 884
Target Start/End: Original strand, 35251394 - 35251742
Alignment:
Q  536 attaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacattttc-agatt 633  Q
    |||||||| |||  || |||||||| ||||| | |||||||||   || |||||||||||||| ||| |||   | ||||||||||| |||||  |||||    
T  35251394 attaaattggtccctacctttgtactaaatttttaaattggtttaggattctattaataactcaaaatggtttatgtctttgtcaaatattttttagatt 35251493  T
Q  634 gattcccccgactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaa 733  Q
    |||  | | ||| |||||||||||||| | ||||||| |||||||  || |||||||||| | |||| ||||| | ||||||||||| |||||||| |||    
T  35251494 gat--ctctgacgctattagttatttt-gcattttaagtcattaagataccaaataagatccaaaagacattacgtcattaaccactaaataatatccaa 35251590  T
Q  734 aagatattgagccattaacactcaaaatacaaaacaactaatagagtcggggaccactctga-annnnnnngacaaagacatgaaccattttaagttatt 832  Q
    |||| ||||||  |||||||||||||||| |||||||||||||||||| | ||||| ||||| |       || |||||||   |||||| |||||||||    
T  35251591 aagacattgagttattaacactcaaaataaaaaacaactaatagagtcagagaccaatctgagaaacatttgagaaagacaaagaccattataagttatt 35251690  T
Q  833 aacagagtcatggaccaatttaagaatttggtacaaaaacatggactaattt 884  Q
    || ||||| | ||||||| || ||||||||||||||| ||| |||| |||||    
T  35251691 aatagagttagggaccaaattgagaatttggtacaaagacagggaccaattt 35251742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 585 - 781
Target Start/End: Original strand, 43049156 - 43049351
Alignment:
Q  585 tctattaataactctaaa-ggtccctctctttgtcaaacatttt-cagattgattcccccgactctattagttatttttgtattttaaatcattaacgta 682  Q
    |||||||||||||| ||| ||||||| |||||||||| | |||| || |||| | |||  |||||||||| || |||| ||||||||| ||||||| |||    
T  43049156 tctattaataactcaaaatggtccctatctttgtcaagcttttttcaaattggtgccc--gactctattaattgtttt-gtattttaagtcattaatgta 43049252  T
Q  683 tcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattgagccattaacactcaaaatacaaaacaactaatagagtc 781  Q
    |||||||||||   |||||||||||| ||||||||||| |||||||| ||||||| ||||| | ||||||| | |||||||||||||||||||||||||    
T  43049253 tcaaataagatctaaaaggcattatgtcattaaccactaaataatatccaaaagacattgaactattaacattaaaaatacaaaacaactaatagagtc 43049351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 539 - 795
Target Start/End: Original strand, 4892397 - 4892650
Alignment:
Q  539 aaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacattt-tcagattgat 636  Q
    ||||| |||| | ||||||||||||||||| ||||| ||    ||||||||||||||||| ||| |||  || |||||||||||||||| | |||||| |    
T  4892397 aaattggtctctgtctttgtaccaaattcttaaattagtctccgactctattaataactcaaaatggttactgtctttgtcaaacatttcttagattggt 4892496  T
Q  637 tcccccgactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaag 736  Q
      ||| ||||||||||||| |||| | |||||||  || ||||||| |||||||||| | |||  ||||  | |||||| |||| |||||||| ||||||    
T  4892497 --ccctgactctattagttgtttt-gcattttaagccactaacgtaccaaataagatccaaaaaacatt--gccattaaacactaaataatatccaaaag 4892591  T
Q  737 atattgagccattaacactcaaaatacaaaacaactaatagagtcggggaccactctga 795  Q
    | | ||| |||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  4892592 acagtgaaccattaacactcaaaatacaaaacaactaatagagtcgtggaccaatctga 4892650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 641 - 886
Target Start/End: Original strand, 54511429 - 54511671
Alignment:
Q  641 ccgactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatat 740  Q
    ||||||||||||||| |||| |||||||||||||||||||||||| ||||||| | ||||  |||||  ||||||| ||| |||||||| |||||||  |    
T  54511429 ccgactctattagttctttt-gtattttaaatcattaacgtatcagataagatccaaaagatattatatcattaacgactaaataatatccaaaagacgt 54511527  T
Q  741 tgagccattaacactcaaaatacaaaacaactaatagagtcggggaccactct-gaannnnnnngacaaagacatgaaccattttaagttattaacagag 839  Q
    |||   | ||| ||||||||||||||||| ||||||||||| ||||||| | |  ||       ||| |||| ||  |||||||| | ||||||| |||     
T  54511528 tga---actaatactcaaaatacaaaacagctaatagagtcagggaccaatttaaaaaacgtttgactaagatatagaccattttgaattattaatagat 54511624  T
Q  840 tcatggaccaatttaagaatttggtacaaaaacatggactaatttaa 886  Q
    || ||||||||||||||||||||||||||||| |  |||||||||||    
T  54511625 tcgtggaccaatttaagaatttggtacaaaaataccgactaatttaa 54511671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 639 - 767
Target Start/End: Complemental strand, 40681693 - 40681566
Alignment:
Q  639 ccccgactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagat 738  Q
    |||||||| ||||||||||||| ||||||||| ||||||| ||||||| |||||||| |||| ||||||| || | |||| | |||||||| || ||||     
T  40681693 ccccgactgtattagttatttt-gtattttaagtcattaatgtatcaattaagattcaaaagacattatgtcactgaccattaaataatatccataagac 40681595  T
Q  739 attgagccattaacactcaaaatacaaaa 767  Q
    ||||||| |||||||||||||||||||||    
T  40681594 attgagctattaacactcaaaatacaaaa 40681566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 642 - 784
Target Start/End: Complemental strand, 42077276 - 42077134
Alignment:
Q  642 cgactctattagttatttttgtattttaaa-tcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatat 740  Q
    |||||||||||||| |||| ||||||| || ||||||| |||  |||||||||   ||| ||||||||  ||||| |||| |||||||||||||| | ||    
T  42077276 cgactctattagttgtttt-gtattttgaagtcattaatgtactaaataagatcgaaaatgcattatgctattaatcactaaataatattcaaaaaacat 42077178  T
Q  741 tgagccattaacactcaaaatacaaaacaactaatagagtcggg 784  Q
    |||||||||| ||||||||||||||||||||||||||| |||||    
T  42077177 tgagccattatcactcaaaatacaaaacaactaatagaatcggg 42077134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 527 - 622
Target Start/End: Original strand, 39864090 - 39864186
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaac 622  Q
    ||||||||||||||||| |||| | ||||||||||||||| | |||||||| |  ||||||||||||||||| ||| | ||||| ||||||||||||    
T  39864090 gagtaaatcattaaattggtctctgtctttgtaccaaatttttaaattggtccccgactctattaataactcaaaatgatccctgtctttgtcaaac 39864186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 804 - 894
Target Start/End: Complemental strand, 39864182 - 39864092
Alignment:
Q  804 gacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    |||||||||| | | |||||| ||||||||| ||||||  |||||||||||| ||||||||||||| |||  ||| |||||||||||||||    
T  39864182 gacaaagacagggatcattttgagttattaatagagtcggggaccaatttaaaaatttggtacaaagacagagaccaatttaatgatttac 39864092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 817 - 887
Target Start/End: Original strand, 33611234 - 33611304
Alignment:
Q  817 accattttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaat 887  Q
    |||||||||||||| ||| ||||| || |||||| |||| ||||||||||||||| |||||| ||||||||    
T  33611234 accattttaagttaataatagagttatagaccaaattaaaaatttggtacaaaaaaatggaccaatttaat 33611304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 817 - 894
Target Start/End: Complemental strand, 51103443 - 51103366
Alignment:
Q  817 accattttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    |||||||| | ||||||| ||||||| |||||||||| ||||||||||||||| |||  ||| |||||| ||||||||    
T  51103443 accattttgaattattaatagagtcagggaccaatttgagaatttggtacaaagacagagaccaatttagtgatttac 51103366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 757 - 869
Target Start/End: Complemental strand, 4892525 - 4892412
Alignment:
Q  757 aaaatacaaaacaactaatagagtcggggaccactctga-annnnnnngacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaa 855  Q
    ||||| ||||||||||||||||||| ||||||| ||| | |       ||||||||||  ||||||||| ||||||||| ||||||   ||| |||||||    
T  4892525 aaaatgcaaaacaactaatagagtcagggaccaatctaagaaatgtttgacaaagacagtaaccattttgagttattaatagagtcggagactaatttaa 4892426  T
Q  856 gaatttggtacaaa 869  Q
    ||||||||||||||    
T  4892425 gaatttggtacaaa 4892412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 527 - 626
Target Start/End: Complemental strand, 51103733 - 51103633
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacatt 625  Q
    ||||||| ||| ||||| |||  ||||||||||||||||| ||||||||||   |||||||||||||||||| |||  ||| || ||||| |||||||||    
T  51103733 gagtaaaccatcaaattggtccctatctttgtaccaaattttcaaattggtcactgactctattaataactcaaaatagtctctgtctttatcaaacatt 51103634  T
Q  626 t 626  Q
    |    
T  51103633 t 51103633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 817 - 884
Target Start/End: Original strand, 40681721 - 40681788
Alignment:
Q  817 accattttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaattt 884  Q
    |||||||||||||||||| ||| ||| |||||||||| |||||| |||||||| ||||| || |||||    
T  40681721 accattttaagttattaatagaatcagggaccaatttgagaattcggtacaaagacatgaaccaattt 40681788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 552 - 598
Target Start/End: Original strand, 35004497 - 35004543
Alignment:
Q  552 tctttgtaccaaattctcaaattggttcttgactctattaataactc 598  Q
    ||||||||||||||||||| |||||| | ||||||||||||||||||    
T  35004497 tctttgtaccaaattctcatattggtccctgactctattaataactc 35004543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 527 - 595
Target Start/End: Original strand, 22886417 - 22886485
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataa 595  Q
    ||||||||||| ||||| ||  || | ||||||||||||||| |||||||||| ||||| |||||||||    
T  22886417 gagtaaatcatcaaattggttcatgtatttgtaccaaattcttaaattggttcctgactttattaataa 22886485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 527 - 595
Target Start/End: Original strand, 22938081 - 22938149
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctattaataa 595  Q
    ||||||||||| ||||| ||  || | ||||||||||||||| |||||||||| ||||| |||||||||    
T  22938081 gagtaaatcatcaaattggttcatgtatttgtaccaaattcttaaattggttcctgactttattaataa 22938149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 558 - 598
Target Start/End: Original strand, 42077056 - 42077096
Alignment:
Q  558 taccaaattctcaaattggttcttgactctattaataactc 598  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  42077056 taccaaattctcaaattggtccttgactttattaataactc 42077096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 527 - 590
Target Start/End: Complemental strand, 4892752 - 4892689
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggttcttgactctatt 590  Q
    ||||||| ||| |||||||| | |||||||||||||||||||||| ||||| |  |||||||||    
T  4892752 gagtaaaccatcaaatttgtttctatctttgtaccaaattctcaatttggtcccagactctatt 4892689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 527 - 577
Target Start/End: Complemental strand, 5808296 - 5808246
Alignment:
Q  527 gagtaaatcattaaatttgtctatatctttgtaccaaattctcaaattggt 577  Q
    |||||||| | |||||| |||  ||||||||||||||||||||||||||||    
T  5808296 gagtaaattactaaattggtccctatctttgtaccaaattctcaaattggt 5808246  T

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Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 820 - 894
Target Start/End: Complemental strand, 35004548 - 35004474
Alignment:
Q  820 attttaagttattaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaatttaatgatttac 894  Q
    ||||| ||||||||| ||||||| |||||||| | ||||||||||||||| ||| ||| ||| ||  ||||||||    
T  35004548 attttgagttattaatagagtcagggaccaatatgagaatttggtacaaagacagggattaaattggtgatttac 35004474  T

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Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 804 - 869
Target Start/End: Complemental strand, 35251477 - 35251412
Alignment:
Q  804 gacaaagacatgaaccattttaagttattaacagagtcatggaccaatttaagaatttggtacaaa 869  Q
    ||||||||||| ||||||||| ||||||||| ||| || |  |||||||||| ||||| |||||||    
T  35251477 gacaaagacataaaccattttgagttattaatagaatcctaaaccaatttaaaaatttagtacaaa 35251412  T

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Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 552 - 597
Target Start/End: Complemental strand, 35251729 - 35251684
Alignment:
Q  552 tctttgtaccaaattctcaaattggttcttgactctattaataact 597  Q
    |||||||||||||||||||| ||||| | | |||||||||||||||    
T  35251729 tctttgtaccaaattctcaatttggtccctaactctattaataact 35251684  T

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Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 552 - 597
Target Start/End: Complemental strand, 40681775 - 40681730
Alignment:
Q  552 tctttgtaccaaattctcaaattggttcttgactctattaataact 597  Q
    |||||||||| ||||||||||||||| | ||| |||||||||||||    
T  40681775 tctttgtaccgaattctcaaattggtccctgattctattaataact 40681730  T

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Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 755 - 796
Target Start/End: Original strand, 42077249 - 42077290
Alignment:
Q  755 tcaaaatacaaaacaactaatagagtcggggaccactctgaa 796  Q
    ||||||||||||||||||||||||||||  ||||| ||||||    
T  42077249 tcaaaatacaaaacaactaatagagtcgatgaccaatctgaa 42077290  T

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Target: scaffold0024 (Bit Score: 63; Significance: 9e-27; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 731 - 885
Target Start/End: Original strand, 70765 - 70920
Alignment:
Q  731 caaaagatattgagccattaacactcaaaatacaaaacaactaatagagtcggggaccactctga-annnnnnngacaaagacatgaaccattttaagtt 829  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||| | ||||| ||||| |       |||||||||||| |||||||| || |    
T  70765 caaaagacattgagtcattaacactcaaaatacaaaacaactaatagagtcagagaccaatctgagaaacgtttgacaaagacatggaccattttgagct 70864  T
Q  830 attaacagagtcatggaccaatttaagaatttggtacaaaaacatggactaattta 885  Q
    ||||| |||||||  ||||||||| ||||||| ||||||| ||| |||| ||||||    
T  70865 attaatagagtcagagaccaatttgagaatttagtacaaagacagggaccaattta 70920  T

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Target: scaffold0024; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 552 - 634
Target Start/End: Complemental strand, 70906 - 70822
Alignment:
Q  552 tctttgtaccaaattctcaaattggttcttgactctattaataactctaaa-ggtccctctctttgtcaaacattt-tcagattg 634  Q
    ||||||||| ||||||||||||||||   |||||||||||||| ||| ||| ||||| | |||||||||||| ||| ||||||||    
T  70906 tctttgtactaaattctcaaattggtctctgactctattaatagctcaaaatggtccatgtctttgtcaaacgtttctcagattg 70822  T

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Target: scaffold0081 (Bit Score: 38; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 643 - 744
Target Start/End: Original strand, 8565 - 8665
Alignment:
Q  643 gactctattagttatttttgtattttaaatcattaacgtatcaaataagattctaaaggcattatgacattaaccactgaataatattcaaaagatattg 742  Q
    ||||||||||||| ||||  |||||||||||||||| | | ||||||| || | ||||  |||||| ||||||||||| |||||||| ||||||| ||||    
T  8565 gactctattagttgtttta-tattttaaatcattaaggcaccaaataatatccaaaagatattatgtcattaaccactaaataatatccaaaagacattg 8663  T
Q  743 ag 744  Q
    ||    
T  8664 ag 8665  T

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