View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_103 (Length: 349)
Name: NF1137_low_103
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_103 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 30 - 309
Target Start/End: Original strand, 55075094 - 55075373
Alignment:
| Q |
30 |
ggttcatcacactttgcttccgctttgtgaaattgcatagattcacaccaattttctttatttatttctcgataatcgcattcgtgatgataaacaataa |
129 |
Q |
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| T |
55075094 |
ggttcatcacactttgcttccgctttgtgaaattgcatagattcacaccaattttctttcgttatttctcgataatcgcattcgtgatgataaacaataa |
55075193 |
T |
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| Q |
130 |
acggttcaaattcaaacaattaaaatcaagatcagagtcgtatactatgttcatccttcttaaagccttaccacaatgtgtgcggcaccgcattaatcga |
229 |
Q |
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| T |
55075194 |
acggttcaaattcaaacaattaaaatcaagatcagagtagtatactatgttcatccttcttaaagccttaccacaatgtgtgcggcaccacattaatcga |
55075293 |
T |
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| Q |
230 |
agtagggggtttgaactcggccaggacattagatagactaatcacacggcaggccaaaacacaatggaccaccataaata |
309 |
Q |
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| T |
55075294 |
agtagggggtttgaactcggccaggacattagatagactaatcacacggcaggccaaaacacaacggaccaccataaata |
55075373 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 19182390 - 19182426
Alignment:
| Q |
302 |
cataaatattagggttaatgaagtttttgatccctat |
338 |
Q |
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| T |
19182390 |
cataaatattagggttaattaagtttttggtccctat |
19182426 |
T |
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