View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_105 (Length: 349)
Name: NF1137_low_105
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_105 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 23915257 - 23915593
Alignment:
| Q |
1 |
acaatacggtaaagcaaccgacaaaaccgatgtttttagcttcggagtcgttgttcttgaagttgcttgtggtagaaggccaattgagaaagaaggtcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23915257 |
acaatacggtaaagcaaccgacaaaaccgatgtttttagcttcggagtcgttgttcttgaagttgcttgtggtagaaggccaattgagaaagaaggtcaa |
23915356 |
T |
|
| Q |
101 |
gaaatggtgaatttggttgattttgtttggggactttattctcaagggaagttaattgaggctgttgataaaagattgaatggtgaatttgatgaagatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
23915357 |
gaaatggtgaatttggttgattttgtttggggactttattctcaagggaagttaattgaggctgttgataagagattgaatggtgaatttgatgaagttg |
23915456 |
T |
|
| Q |
201 |
aaatgaagaagatgttactattagggttaagttgtgcaaatccaaatagtgatgaaaggccttctatgagaagagttttgcaaattcttaacaatgaagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23915457 |
aaatgaagaagatgttactattagggttaagttgtgcaaatccaaatagtgatgaaaggccttctatgagaagagttttgcaaattcttaacaatgaagc |
23915556 |
T |
|
| Q |
301 |
tttgcctcttgttgtgcctaaagtgaaaccttgcctt |
337 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
23915557 |
tttgcctcttgttgtgcctaaagtgaaaccttgcctt |
23915593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 2 - 301
Target Start/End: Original strand, 1225411 - 1225710
Alignment:
| Q |
2 |
caatacggtaaagcaaccgacaaaaccgatgtttttagcttcggagtcgttgttcttgaagttgcttgtggtagaaggccaattgagaaagaaggtcaag |
101 |
Q |
| |
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||||| |||||||| || || || || |||||||| ||||| || || ||||| |||||||| |||||||| | |||||| ||||| | ||| |||| | |
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| T |
1225411 |
caatatggtaaagctactgataagactgatgttttcagctttggtgtggttgtgcttgaagtggcttgtgggaaaaggcctattgaaagagagggtccaa |
1225510 |
T |
|
| Q |
102 |
aaatggtgaatttggttgattttgtttggggactttattctcaagggaagttaattgaggctgttgataaaagattgaatggtgaatttgatgaagatga |
201 |
Q |
| |
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| ||| | |||||||| |||| |||||||| | |||| | |||||||| ||||||||||||||||||| || |||||||||||||| || ||||| || |
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| T |
1225511 |
agatgattaatttggtggattgggtttgggggttgtattatgaagggaagataattgaggctgttgataagaggttgaatggtgaattcgaggaagagga |
1225610 |
T |
|
| Q |
202 |
aatgaagaagatgttactattagggttaagttgtgcaaatccaaatagtgatgaaaggccttctatgagaagagttttgcaaattcttaacaatgaagct |
301 |
Q |
| |
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||||| |||| | || | |||||||| || ||||| ||||| |||||| || ||||||| | |||||| | |||||||| ||||| |||||||||||| |
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| T |
1225611 |
aatgaggaagcttttgttgttagggttgagctgtgctaatcctgatagtgctgcaaggcctacaatgagatgggttttgcagattctcaacaatgaagct |
1225710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 2 - 301
Target Start/End: Original strand, 41963976 - 41964275
Alignment:
| Q |
2 |
caatacggtaaagcaaccgacaaaaccgatgtttttagcttcggagtcgttgttcttgaagttgcttgtggtagaaggccaattgagaaagaaggtcaag |
101 |
Q |
| |
|
||||| |||||||| || || || || |||||||| ||||| || || ||||| |||||||| |||||||| | |||||| ||||| | ||| |||| | |
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| T |
41963976 |
caatatggtaaagctactgataagactgatgttttcagctttggtgtggttgtgcttgaagtggcttgtgggaaaaggcctattgaaagagagggtccaa |
41964075 |
T |
|
| Q |
102 |
aaatggtgaatttggttgattttgtttggggactttattctcaagggaagttaattgaggctgttgataaaagattgaatggtgaatttgatgaagatga |
201 |
Q |
| |
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| ||| | |||||||| |||| |||||||| | |||||| |||||||| ||||||||||||||||||| || |||||||||||||| || ||||| || |
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| T |
41964076 |
agatgattaatttggtggattgggtttgggggttgtattctgaagggaagataattgaggctgttgataagaggttgaatggtgaattcgaggaagagga |
41964175 |
T |
|
| Q |
202 |
aatgaagaagatgttactattagggttaagttgtgcaaatccaaatagtgatgaaaggccttctatgagaagagttttgcaaattcttaacaatgaagct |
301 |
Q |
| |
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||||| |||| | || | |||||||| || ||||| ||||| |||||| || ||||||| | |||||||| |||||||| ||||| |||||||||||| |
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| T |
41964176 |
aatgacgaagcttttgttgttagggttgagctgtgctaatcctgatagtgctgcaaggcctacaatgagaagggttttgcagattctcaacaatgaagct |
41964275 |
T |
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