View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_low_11 (Length: 719)

Name: NF1137_low_11
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_low_11
NF1137_low_11
[»] chr3 (1 HSPs)
chr3 (36-719)||(54478530-54479211)


Alignment Details
Target: chr3 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 36 - 719
Target Start/End: Original strand, 54478530 - 54479211
Alignment:
Q  36 ttcaatataaagcttcatcataatatttggaatttgtttccaattaactacaatctattgcaggtccacaagttttgcataagtacgtgtatctagtttt 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||    
T  54478530 ttcaatataaagcttcatcataatatttggaatttgtttccaattaactacaatctattgcaggtccacaagttttgcataagt----gtatctagtttt 54478625  T
Q  136 gacaaaccttttagtcgtccaatgagcaaattagtcattattttattttctataatgtacgatactacatcaatattaaagaaaaactgttcttaaagca 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54478626 gacaaaccttttagtcgtccaatgagcaaattagtcattattttattttctataatgtacgatactacatcaatattaaagaaaaactgttcttaaagca 54478725  T
Q  236 tgaaaataatgcaaatatatattaattatannnnnnnnnnggaggcagtgataattcaatgaagaaagctttttgtaacatatt---ttaaattcattga 332  Q
    ||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  54478726 tgaaaataatgcaaatatatattaattata-tatttttttggaggcagtgataattcaatgaagaaagctttttgtaacatattttattaaattcattga 54478824  T
Q  333 agaaatcttttttgtaaaatattttaaagtataaatatttgtatttgagcattgctttaaataatatgcatacaataagttgatcacttcaaagttaaag 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54478825 agaaatcttttttgtaaaatattttaaagtataaatatttgtatttgagcattgctttaaataatatgcatacaataagttgatcacttcaaagttaaag 54478924  T
Q  433 atcaaagtcttttttcattctctttcccattaaatttcctcacattgctcactcacactcacatcagaacannnnnnnnnnnnnnnnnnnnnnnnattaa 532  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||                        |||||    
T  54478925 atcaaagtctgttttcattctctttcccattaaatttcctcacattgctcactcacactcgcatcagaacattcttttctttttcttttctctctattaa 54479024  T
Q  533 ctcactccctcttattctttcaacacatcgatggatcccttcagagaaatcatgaatggctttgaggtaactcgagatggaaaaagtgtagtcatccctg 632  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  54479025 ctcactccctcttattctttcaacacatcgatggatcccttcagagatatcatgaatggctttgaagtaactcgagatggaaaaagtgtagtcatccctg 54479124  T
Q  633 ccccttttgtatggccgctgattgcagagcaaccgttcacagctacaaatatctcttgcaaaatagaatagttaatatcaccggagc 719  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54479125 ccccttttgtatggccgctgattgcagagcaaccgttcacagctacaaatatctcttgcaaaatagaatagttaatatcaccggagc 54479211  T

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