View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_110 (Length: 336)
Name: NF1137_low_110
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_110 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 30 - 321
Target Start/End: Original strand, 35203997 - 35204288
Alignment:
| Q |
30 |
tttagttcatgcaaagtgtattgctattattttgttattatctactttagacaagatcacgttaaagagtagtactaccaagcatatagatcctgaaatg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35203997 |
tttagttcatgcaaagtgtattgctattattttgttattatctactttagacaagatcacgttaaagagtagtactaccaagcatatagatcctgaaatg |
35204096 |
T |
|
| Q |
130 |
gtgtggaactgtatgtgggctatgatagtctggctcaaaactgttacacacaataggaattaaactgcaagactcaaacttatatgttgtcatttagtgg |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35204097 |
gtgtggaactgtatgtgggctatgatagtctggctcaaaactgttacacacaataggaattaagctgcaagactcaaacttatatgttgtcatttagtgg |
35204196 |
T |
|
| Q |
230 |
cagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtgcatgacaggttttatcaacaaacactcatatat |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35204197 |
cagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtgcatgacaggttttatcaacaaacactcatatat |
35204288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 30 - 288
Target Start/End: Complemental strand, 55859629 - 55859371
Alignment:
| Q |
30 |
tttagttcatgcaaagtgtattgctattattttgttattatctactttagacaagatcacgttaaagagtagtactaccaagcatatagatcctgaaatg |
129 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
55859629 |
tttagttcatgcaaagtgtattgctattgttttattattatctactttagacaagatcacgttagagagtagtactaccaagcatatagatcctgaaatg |
55859530 |
T |
|
| Q |
130 |
gtgtggaactgtatgtgggctatgatagtctggctcaaaactgttacacacaataggaattaaactgcaagactcaaacttatatgttgtcatttagtgg |
229 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
55859529 |
gtgtggaactgtatgtgggctatggtagtctggctcaaaactgttacacacaataagaattaagctgcaagactcaaacttatatgttgtcatttagtgg |
55859430 |
T |
|
| Q |
230 |
cagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtg |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
55859429 |
cagggaacatttcatcatctatattcaattcaggtgcctagaaaccatagtgctaggtg |
55859371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 30 - 288
Target Start/End: Original strand, 29274969 - 29275227
Alignment:
| Q |
30 |
tttagttcatgcaaagtgtattgctattattttgttattatctactttagacaagatcacgttaaagagtagtactaccaagcatatagatcctgaaatg |
129 |
Q |
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|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29274969 |
tttagttcatgcaaagtgtattgctattgttttattattatctactttagacaagatcacgttagagagtagtactaccaagcatatagatcctgaaatg |
29275068 |
T |
|
| Q |
130 |
gtgtggaactgtatgtgggctatgatagtctggctcaaaactgttacacacaataggaattaaactgcaagactcaaacttatatgttgtcatttagtgg |
229 |
Q |
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|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29275069 |
gtgtggaactgtatgtgggctatggtagtctggctcaaaactgttacacacaataggaattaagctgcaagactcaaacttatatgttgtcatttagtgg |
29275168 |
T |
|
| Q |
230 |
cagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtg |
288 |
Q |
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|| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
29275169 |
caaggaacatttcatcatctatattcaattcaggtgactagaaaccatagtgctaggtg |
29275227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 30 - 288
Target Start/End: Original strand, 3822400 - 3822656
Alignment:
| Q |
30 |
tttagttcatgcaaagtgtattgctattattttgttattatctactttagacaagatcacgttaaagagtagtactaccaagcatatagatcctgaaatg |
129 |
Q |
| |
|
||||||||||||||| ||||||||| |||||| ||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
3822400 |
tttagttcatgcaaa----attgctattgttttgtgattatctactttagacaagctcacgttagagagtagtactgccaagcatatagatcctgaaatg |
3822495 |
T |
|
| Q |
130 |
gtgtggaa-ctgtatgtgggctatgatagtctggctcaaaactgttacacacaatagg-aattaaactgcaagactcaaacttatatgttgtcatttagt |
227 |
Q |
| |
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|||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||| |
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| T |
3822496 |
gtgtggaaactgtatgtgggctatggtagtctggctcaaaactattacacacaatagggaattaagctgcatgactcaaacttatatgctgtcatttagt |
3822595 |
T |
|
| Q |
228 |
ggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtg |
288 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
3822596 |
ggcagggaacatattatcatctatattcaattcaggtgcctagaaactatagtgctaggtg |
3822656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 118 - 288
Target Start/End: Complemental strand, 46267515 - 46267346
Alignment:
| Q |
118 |
gatcctgaaatggtgtggaactgtatgtgggctatgatagtctggctcaaaactgttacacacaataggaattaaactgcaagactcaaacttatatgtt |
217 |
Q |
| |
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||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
46267515 |
gatcctgaaatggtgtggaactgtacgtggactatgatagtctggctcaaa-ctgttacacacaataggaattaagctgcaagactcaaacttatatgtt |
46267417 |
T |
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| Q |
218 |
gtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtg |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
46267416 |
gtcatttagtggcagggaacatttcatcatctatattcaatgcaggtgcctagaaaccatagtgctaggtg |
46267346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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