View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_114 (Length: 331)
Name: NF1137_low_114
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_114 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 6394146 - 6394381
Alignment:
| Q |
16 |
atgtcaggtaccagttaaaatatagaataataggtataagagtagtccaagtagttaggacttaggaggttgagctatgaattgagtagaaacttgaagg |
115 |
Q |
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| T |
6394146 |
atgtcaggtaccagttaaaatatagaataataggtataagagtagtccaagtagttaggacttaggaggttgagctatgaattgagtagaaacttgaagg |
6394245 |
T |
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| Q |
116 |
agagcttcactcttactatttattattttcttaattcaattggagaagcaattgtccaaggtcaaaacagaacactcagagcagacatgcagaagcaagt |
215 |
Q |
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| T |
6394246 |
agagcttcactcttactatttcttattttcttaattcaattggagaagcaattgtccaaggtcaaaacagaacactcagagcagacatgcagaagcaagt |
6394345 |
T |
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| Q |
216 |
acgaaacacaggtacacatattatcaagttaaacat |
251 |
Q |
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| T |
6394346 |
acgaaacacaggtacacatattatcaagttaaacat |
6394381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 6425794 - 6425843
Alignment:
| Q |
142 |
tttcttaattcaattggagaagcaattgtccaaggtcaaaacagaacact |
191 |
Q |
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| T |
6425794 |
tttcttaattcaattggagaagcaattgtccaaggtcaaaacaaaacact |
6425843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 14819886 - 14819943
Alignment:
| Q |
156 |
tggagaagcaattgtccaaggtcaaaacagaacactcagagcagacatgcagaagcaa |
213 |
Q |
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| T |
14819886 |
tggagaagcaataacctaaggtcaaaacagaacactcagggtagacatgcagacgcaa |
14819943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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