View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_low_115 (Length: 327)

Name: NF1137_low_115
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_low_115
NF1137_low_115
[»] chr3 (14 HSPs)
chr3 (1-112)||(21399855-21399968)
chr3 (1-112)||(21035305-21035415)
chr3 (1-112)||(15845655-15845765)
chr3 (1-112)||(13330210-13330320)
chr3 (1-90)||(25977875-25977966)
chr3 (1-112)||(28089189-28089301)
chr3 (177-230)||(10662039-10662092)
chr3 (8-112)||(15316312-15316416)
chr3 (177-226)||(10511279-10511328)
chr3 (177-230)||(10514603-10514656)
chr3 (6-90)||(12332262-12332348)
chr3 (6-90)||(55428088-55428174)
chr3 (180-226)||(7131526-7131573)
chr3 (110-153)||(10661961-10662004)
[»] scaffold0686 (1 HSPs)
scaffold0686 (1-113)||(7644-7755)
[»] chr8 (17 HSPs)
chr8 (1-112)||(8370384-8370494)
chr8 (1-112)||(26242096-26242206)
chr8 (1-91)||(21970389-21970478)
chr8 (1-90)||(22658662-22658752)
chr8 (6-88)||(6431887-6431970)
chr8 (1-67)||(2962101-2962167)
chr8 (1-90)||(26652435-26652525)
chr8 (6-89)||(27006673-27006755)
chr8 (6-89)||(27013816-27013898)
chr8 (6-90)||(45533425-45533511)
chr8 (1-48)||(25612262-25612309)
chr8 (6-90)||(21917738-21917824)
chr8 (6-90)||(29561912-29561998)
chr8 (191-230)||(30779719-30779758)
chr8 (6-90)||(22646819-22646905)
chr8 (180-223)||(28183737-28183781)
chr8 (179-226)||(32778555-32778603)
[»] chr5 (15 HSPs)
chr5 (1-112)||(31097870-31097980)
chr5 (1-106)||(25804516-25804620)
chr5 (1-112)||(20942095-20942206)
chr5 (1-112)||(9810870-9810982)
chr5 (1-112)||(12703111-12703223)
chr5 (1-112)||(12764126-12764238)
chr5 (1-112)||(7864572-7864683)
chr5 (1-55)||(22942284-22942338)
chr5 (1-116)||(39428479-39428594)
chr5 (6-90)||(24932458-24932544)
chr5 (6-91)||(32962-33050)
chr5 (179-226)||(6525896-6525944)
chr5 (6-91)||(12788813-12788900)
chr5 (181-226)||(22792133-22792179)
chr5 (6-90)||(23546986-23547072)
[»] chr1 (17 HSPs)
chr1 (1-112)||(22613545-22613655)
chr1 (1-112)||(43801496-43801606)
chr1 (1-112)||(28133847-28133958)
chr1 (1-112)||(19705605-19705715)
chr1 (1-112)||(28145331-28145442)
chr1 (1-112)||(47666617-47666729)
chr1 (1-110)||(35936379-35936486)
chr1 (6-89)||(22669411-22669496)
chr1 (6-90)||(14482954-14483040)
chr1 (6-90)||(33262849-33262935)
chr1 (6-90)||(33283008-33283094)
chr1 (1-67)||(8728694-8728760)
chr1 (6-90)||(20390393-20390479)
chr1 (6-91)||(20778796-20778884)
chr1 (180-226)||(8793198-8793245)
chr1 (6-90)||(22239877-22239963)
chr1 (180-224)||(7204533-7204578)
[»] chr6 (12 HSPs)
chr6 (1-112)||(18018953-18019063)
chr6 (1-112)||(5754155-5754266)
chr6 (1-112)||(8613968-8614080)
chr6 (1-112)||(33317920-33318032)
chr6 (5-112)||(14075553-14075660)
chr6 (6-89)||(22859044-22859126)
chr6 (6-90)||(1585258-1585344)
chr6 (185-226)||(9297821-9297862)
chr6 (6-90)||(11250622-11250709)
chr6 (6-92)||(16790126-16790214)
chr6 (6-92)||(27507498-27507586)
chr6 (1-67)||(21996844-21996909)
[»] scaffold0112 (1 HSPs)
scaffold0112 (1-112)||(1251-1362)
[»] chr4 (21 HSPs)
chr4 (1-112)||(15462574-15462684)
chr4 (1-112)||(28916900-28917011)
chr4 (1-111)||(34976582-34976690)
chr4 (1-114)||(11482935-11483049)
chr4 (2-112)||(4547123-4547233)
chr4 (1-67)||(15651578-15651644)
chr4 (1-55)||(9488595-9488649)
chr4 (6-86)||(38817701-38817782)
chr4 (6-90)||(18164226-18164312)
chr4 (6-92)||(18110193-18110281)
chr4 (6-90)||(4675102-4675188)
chr4 (6-90)||(17299107-17299193)
chr4 (6-90)||(20245002-20245088)
chr4 (1-67)||(30039707-30039773)
chr4 (6-91)||(2678076-2678164)
chr4 (6-91)||(26532677-26532765)
chr4 (185-226)||(32057747-32057788)
chr4 (6-92)||(5871481-5871569)
chr4 (181-226)||(37759488-37759534)
chr4 (179-230)||(3084262-3084313)
chr4 (183-226)||(24870658-24870702)
[»] scaffold0037 (1 HSPs)
scaffold0037 (2-112)||(38702-38811)
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-117)||(73322-73438)
[»] chr7 (17 HSPs)
chr7 (1-112)||(8466059-8466169)
chr7 (1-112)||(34129635-34129747)
chr7 (1-119)||(19231931-19232050)
chr7 (9-90)||(18258280-18258363)
chr7 (1-90)||(41680204-41680295)
chr7 (1-67)||(47166041-47166107)
chr7 (8-67)||(28131599-28131658)
chr7 (1-112)||(10666192-10666304)
chr7 (1-55)||(42148524-42148578)
chr7 (6-90)||(15730817-15730903)
chr7 (6-90)||(48807668-48807754)
chr7 (6-91)||(12188766-12188854)
chr7 (6-91)||(19860181-19860269)
chr7 (6-86)||(30255203-30255284)
chr7 (1-55)||(19392644-19392698)
chr7 (182-226)||(6328197-6328242)
chr7 (183-226)||(9506865-9506909)
[»] scaffold0069 (1 HSPs)
scaffold0069 (1-113)||(278-389)
[»] scaffold0389 (1 HSPs)
scaffold0389 (6-112)||(1227-1333)
[»] scaffold0017 (1 HSPs)
scaffold0017 (1-112)||(128553-128663)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-112)||(137827-137937)
[»] chr2 (11 HSPs)
chr2 (6-90)||(24228378-24228463)
chr2 (1-64)||(19617466-19617529)
chr2 (1-67)||(24761929-24761995)
chr2 (2-67)||(32739194-32739259)
chr2 (6-91)||(24249183-24249271)
chr2 (180-226)||(22999133-22999180)
chr2 (180-224)||(13491084-13491129)
chr2 (179-226)||(22382356-22382404)
chr2 (179-226)||(22914382-22914430)
chr2 (183-226)||(32517841-32517885)
chr2 (179-230)||(36685423-36685474)
[»] scaffold0466 (1 HSPs)
scaffold0466 (1-52)||(10096-10147)
[»] scaffold0160 (1 HSPs)
scaffold0160 (179-226)||(22139-22187)
[»] scaffold0193 (1 HSPs)
scaffold0193 (6-90)||(32305-32391)
[»] scaffold1849 (1 HSPs)
scaffold1849 (6-91)||(176-264)
[»] scaffold0264 (1 HSPs)
scaffold0264 (6-92)||(2826-2915)


Alignment Details
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 21399855 - 21399968
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgtatt--aaaaa 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||  |||||    
T  21399855 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaattattttccgctgcttattctgtattaaaaaaa 21399954  T
Q  99 tcgattttccttca 112  Q
    ||||||||||||||    
T  21399955 tcgattttccttca 21399968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 21035305 - 21035415
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgtattaaaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||    
T  21035305 cttcgaggtaacaatcgaatcactgattcatgtgtaattcataatgatccaaggaaagaaaatcgaattattttccgctgcttattctgtatt-aaaatc 21035403  T
Q  101 gattttccttca 112  Q
    ||||||||||||    
T  21035404 gattttccttca 21035415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 15845765 - 15845655
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgtattaaaaatc 100  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||| ||||||||||||||||||||||| |  |||||    
T  15845765 cttcgaagtaacaatcgaatcactgattcatgtgcaattcgtaatgatccaaggaaagaaaatcgaaatattttccgctgcttattctgtaat-gaaatc 15845667  T
Q  101 gattttccttca 112  Q
    ||||||||||||    
T  15845666 gattttccttca 15845655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 13330210 - 13330320
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgtattaaaaat 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||| ||||||| ||||||||||||  || || ||    
T  13330210 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaataattttcccctgcttattctg--tttaagat 13330307  T
Q  100 cgattttccttca 112  Q
    |||||||||||||    
T  13330308 cgattttccttca 13330320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 25977966 - 25977875
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattatttt--ccgctgcttattctgt 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||  |||||  | ||||||||||||||    
T  25977966 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatctaaggaaagaaaatcgaaaaattttacctgctgcttattctgt 25977875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 28089189 - 28089301
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattt--tccgctgcttattctgtattaaaaa 98  Q
    |||||||||||||||| ||  ||| ||||||||||||||||||||||||||||||  ||||||||||  ||||  ||||||||||||||||| ||  ||     
T  28089189 cttcgaggtaacaatcaaagaactaattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgt-tttgaat 28089287  T
Q  99 tcgattttccttca 112  Q
    ||||||||||||||    
T  28089288 tcgattttccttca 28089301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 10662039 - 10662092
Alignment:
Q  177 ggtcggggttcgaacccgatacctccactttgcgtgtgtgagtttatgataact 230  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10662039 ggtcggggttcgaacccgatacctccactttacgtgtgtgagtttatgataact 10662092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 15316416 - 15316312
Alignment:
Q  8 gtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgtattaaaaatcgatttt 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||  |||||| | || | || |||| |||||||||||| ||  || ||||||||    
T  15316416 gtaacaatcggatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaattgaaaatcttatccgttgcttattctgt-tttgaattcgatttt 15316318  T
Q  107 ccttca 112  Q
    ||||||    
T  15316317 ccttca 15316312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 10511279 - 10511328
Alignment:
Q  177 ggtcggggttcgaacccgatacctccactttgcgtgtgtgagtttatgat 226  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  10511279 ggtcagggttcgaacccgatacctccactttgcgtgtgtgaatttatgat 10511328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 10514603 - 10514656
Alignment:
Q  177 ggtcggggttcgaacccgatacctccactttgcgtgtgtgagtttatgataact 230  Q
    ||||||||||| || ||||||||| |||||||||||||||||||||||||||||    
T  10514603 ggtcggggttcaaatccgatacctacactttgcgtgtgtgagtttatgataact 10514656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 12332262 - 12332348
Alignment:
Q  6 aggtaacaatcgaatcactgattcatg-tgtaattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgt 90  Q
    |||||||||||||||||||| |||| | |  ||||||||||||||||||||  | |||||| |||| | ||||||||||||||||||    
T  12332262 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgt 12332348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 55428088 - 55428174
Alignment:
Q  6 aggtaacaatcgaatcactgattcatg-tgtaattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgt 90  Q
    |||||||||||||||||||| |||| | |  ||||||||||||||||||||  | |||||| |||| | ||||||||||||||||||    
T  55428088 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgt 55428174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 7131573 - 7131526
Alignment:
Q  180 cggggttcgaacc-cgatacctccactttgcgtgtgtgagtttatgat 226  Q
    ||||||||||||  |||||||||||||||| |||||||||||||||||    
T  7131573 cggggttcgaacttcgatacctccactttgtgtgtgtgagtttatgat 7131526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 153
Target Start/End: Original strand, 10661961 - 10662004
Alignment:
Q  110 tcacttttatcccaaaaatcatcccataagtcctagttcaactg 153  Q
    ||||||||||||||  |||||||||||||||| |||||||||||    
T  10661961 tcacttttatcccagtaatcatcccataagtcatagttcaactg 10662004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 7755 - 7644
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgtattaaaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||| ||||||    
T  7755 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaattattttccgctgcttattctatatt-aaaatc 7657  T
Q  101 gattttccttcac 113  Q
    |||||||||||||    
T  7656 gattttccttcac 7644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 8370494 - 8370384
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgtattaaaaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||| ||||||    
T  8370494 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaagaaaagaaaatcgaattattttccgctgcttattctgtatt-aaaatc 8370396  T
Q  101 gattttccttca 112  Q
    ||||||||||||    
T  8370395 gattttccttca 8370384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 26242096 - 26242206
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgtattaaaaatc 100  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||  ||||||||||| |||||| ||||||||||||||||| ||||||    
T  26242096 cttcgaggtaacagtcgagtcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaataattttctgctgcttattctgtatt-aaaatc 26242194  T
Q  101 gattttccttca 112  Q
    ||||||||||||    
T  26242195 gattttccttca 26242206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 21970389 - 21970478
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgta 91  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||| | |||||||||||||||| ||||    
T  21970389 cttcgaggtaacaatcgaatcactgattcatgtgtagttcgtaatgatccaaggaaagaaaatcgaaat-ttttccgctgcttattttgta 21970478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 22658752 - 22658662
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgt 90  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||| || | || |||||||||||||||||    
T  22658752 cttcgaggtaacaatcgaatcactcattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaattttatccgctgcttattctgt 22658662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 6431887 - 6431970
Alignment:
Q  6 aggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattct 88  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||| || | || |||||||||||||||    
T  6431887 aggtaacaatcggatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaattttatccgctgcttattct 6431970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 2962167 - 2962101
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaa 67  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||  ||||||||||    
T  2962167 cttcgaggtaacaatcggatcactgattcatgtataattcgtaatgatccaaggaaagaaaatcgaa 2962101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 26652525 - 26652435
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgt 90  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||| |||||   ||||||| ||| |||||| ||||||||||||||    
T  26652525 cttcgaagtaacaatcaaatcactgattcatgtgtaattcgtaatgatctaaggaaaaaaaatcgaaataattttctgctgcttattctgt 26652435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 27006755 - 27006673
Alignment:
Q  6 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctg 89  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||  | |||||||||  |||||||||||||||||||    
T  27006755 aggtaacaatcgaatcactggttcaagtttcaattcgtaatgatccaaggaaagtaaatcgaat--ttttccgctgcttattctg 27006673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 27013898 - 27013816
Alignment:
Q  6 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctg 89  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||  | |||||||||  |||||||||||||||||||    
T  27013898 aggtaacaatcgaatcactggttcaagttttaattcgtaatgatccaaggaaagtaaatcgaat--ttttccgctgcttattctg 27013816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 45533511 - 45533425
Alignment:
Q  6 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgt 90  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||  | |||||| |||| | ||||||||||||||||||    
T  45533511 aggtaacaatcgaatcactggttcaagtttcaattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgt 45533425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 25612262 - 25612309
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgat 48  Q
    |||||||||||||||||||||||| |||| ||| ||||||||||||||    
T  25612262 cttcgaggtaacaatcgaatcactaattcgtgtctaattcgtaatgat 25612309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 21917738 - 21917824
Alignment:
Q  6 aggtaacaatcgaatcactgattcatg-tgtaattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgt 90  Q
    |||||||||||||||||||| |||| | |  ||||||||||||||||||||  | |||||| |||| | ||||||||||||||||||    
T  21917738 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgt 21917824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 29561912 - 29561998
Alignment:
Q  6 aggtaacaatcgaatcactgattcatg-tgtaattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgt 90  Q
    |||||||||||||||||||| |||| | |  ||||||||||||||||||||  | |||||| |||| | ||||||||||||||||||    
T  29561912 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgt 29561998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 30779719 - 30779758
Alignment:
Q  191 cccgatacctccactttgcgtgtgtgagtttatgataact 230  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  30779719 cccgatacctccactttgtgtgtttgagtttatgataact 30779758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 22646819 - 22646905
Alignment:
Q  6 aggtaacaatcgaatcactgattcatg-tgtaattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgt 90  Q
    |||||||||||||||||||| |||| | |  ||||||||||||||||||||  | |||||| |||| | ||||||||||| ||||||    
T  22646819 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgctttttctgt 22646905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 28183781 - 28183737
Alignment:
Q  180 cggggttcgaaccc-gatacctccactttgcgtgtgtgagtttat 223  Q
    |||||||||||||| || |||||||||||| ||||||||||||||    
T  28183781 cggggttcgaaccccgacacctccactttgtgtgtgtgagtttat 28183737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 32778555 - 32778603
Alignment:
Q  179 tcggggttcgaac-ccgatacctccactttgcgtgtgtgagtttatgat 226  Q
    |||||||| |||| ||||||||||||||||| ||||||| |||||||||    
T  32778555 tcggggtttgaactccgatacctccactttgtgtgtgtgggtttatgat 32778603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 31097870 - 31097980
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgtattaaaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||| ||||||    
T  31097870 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaataattttccgctgcttattctgtatt-aaaatc 31097968  T
Q  101 gattttccttca 112  Q
    ||||||||||||    
T  31097969 gattttccttca 31097980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 25804620 - 25804516
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgtattaaaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| | ||||||||||||||||||||| |  |||||    
T  25804620 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaat-ttttccgctgcttattctgtaatgcaaatc 25804522  T
Q  101 gatttt 106  Q
    ||||||    
T  25804521 gatttt 25804516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 20942095 - 20942206
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattat-tttccgctgcttattctgtattaaaaat 99  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||| |||||| || |||||||||||| |||||    
T  20942095 cttcgtggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaagaaagaaaatcgaattatatttccgttgtttattctgtatt-aaaat 20942193  T
Q  100 cgattttccttca 112  Q
    |||||||||||||    
T  20942194 cgattttccttca 20942206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 9810982 - 9810870
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcg--aattattttccgctgcttattctgtattaaaaa 98  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||  |||| || ||||||||||||||||| ||  ||     
T  9810982 cttcgaggtaacaatcggatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaatttttatccgctgcttattctgt-tttgaat 9810884  T
Q  99 tcgattttccttca 112  Q
    ||||||||||||||    
T  9810883 tcgattttccttca 9810870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 12703223 - 12703111
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcg--aattattttccgctgcttattctgtattaaaaa 98  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||| |  |||| || ||||||||||||||||| ||  ||     
T  12703223 cttcgaggtaacaatcggatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaattgaaaatttttatccgctgcttattctgt-tttgaat 12703125  T
Q  99 tcgattttccttca 112  Q
    ||||||||||||||    
T  12703124 tcgattttccttca 12703111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 12764238 - 12764126
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcg--aattattttccgctgcttattctgtattaaaaa 98  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||  ||||||||  |||| || ||||||||||||||||| ||  ||     
T  12764238 cttcgaggtaacaatcagatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaatttttatccgctgcttattctgt-tttgaat 12764140  T
Q  99 tcgattttccttca 112  Q
    ||||||||||||||    
T  12764139 tcgattttccttca 12764126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 7864683 - 7864572
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgtattaaaaat 99  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||  |||||||| || | || ||||||||||||||||| ||  || |    
T  7864683 cttcgaggtaacaatcggatcacttattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaattttatccgctgcttattctgt-tttgaatt 7864585  T
Q  100 cgattttccttca 112  Q
    |||||||||||||    
T  7864584 cgattttccttca 7864572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 22942284 - 22942338
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaagga 55  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22942284 cttcgaggtaacaatcaaatcactgattcatgtgtaattcgtaatgatccaagga 22942338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 39428479 - 39428594
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcg-aattattttccgctgc-ttattctgtattaaaaa 98  Q
    ||||||||||||||  ||||||||||| | |||||||||||||||||||||||||  |||||||| || | || |||||||| ||||||||  ||| ||     
T  39428479 cttcgaggtaacaactgaatcactgatacttgtgtaattcgtaatgatccaaggaaagaaaatcgaaaattttatccgctgctttattctg--ttacaat 39428576  T
Q  99 tcgattttccttcacttt 116  Q
    ||||||||||||||||||    
T  39428577 tcgattttccttcacttt 39428594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 24932544 - 24932458
Alignment:
Q  6 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgt 90  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||  | |||||| |||| | ||||||||||||||||||    
T  24932544 aggtaacaatcgaatcactggttcaagtttcaattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgt 24932458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 32962 - 33050
Alignment:
Q  6 aggtaacaatcgaatcactgattcatg-tgtaattcgtaatgatccaaggattgaaaatcg--aattattttccgctgcttattctgta 91  Q
    |||||||||||||||||||| |||| | |  ||||||||||||||||||||  | ||||||  |||| | |||||||||||||||||||    
T  32962 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaaattttattccgctgcttattctgta 33050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 6525896 - 6525944
Alignment:
Q  179 tcggggttcgaacccga-tacctccactttgcgtgtgtgagtttatgat 226  Q
    ||||||||||||||| | ||||||||||||| |||||||||||||||||    
T  6525896 tcggggttcgaaccccaatacctccactttgtgtgtgtgagtttatgat 6525944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 12788900 - 12788813
Alignment:
Q  6 aggtaacaatcgaatcactgattcatg-tgtaattcgtaatgatccaaggattgaaaatcga-attattttccgctgcttattctgta 91  Q
    |||||||||||||||||||| |||| | |  ||||||||||||||||||||  | ||||||| ||| | ||| |||||||||||||||    
T  12788900 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgagattttattctgctgcttattctgta 12788813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 22792179 - 22792133
Alignment:
Q  181 ggggttcgaaccc-gatacctccactttgcgtgtgtgagtttatgat 226  Q
    ||||||||||||| || |||||||||||| |||||||||||||||||    
T  22792179 ggggttcgaaccccgacacctccactttgtgtgtgtgagtttatgat 22792133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 23546986 - 23547072
Alignment:
Q  6 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgt 90  Q
    ||||||| |||||||||||| |||| ||   ||||||||||||||||||||  | |||||| |||| | ||||||||||||||||||    
T  23546986 aggtaactatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgt 23547072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 22613545 - 22613655
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgtattaaaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||| |||||||||    
T  22613545 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaatta-tttccgctgcttattctgttttaaaaatc 22613643  T
Q  101 gattttccttca 112  Q
    ||||||||||||    
T  22613644 gattttccttca 22613655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 43801606 - 43801496
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgtattaaaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| | ||||||    
T  43801606 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaattattttccgctgcttattctgta-tgaaaatc 43801508  T
Q  101 gattttccttca 112  Q
    ||||||||||||    
T  43801507 gattttccttca 43801496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 28133958 - 28133847
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgtattaaaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| | ||||||||||||||||||||| |  |||||    
T  28133958 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaattttttccgctgcttattctgtaatgtaaatc 28133859  T
Q  101 gattttccttca 112  Q
    ||||||||||||    
T  28133858 gattttccttca 28133847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 19705715 - 19705605
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgtattaaaaatc 100  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||| | ||||||||||||||||||||| |  |||||    
T  19705715 cttcgagataacaatcgaatcactgattcatgtgtaatttgtaatgatccaaggaaagaaaatcgaaat-ttttccgctgcttattctgtaatgtaaatc 19705617  T
Q  101 gattttccttca 112  Q
    ||||||||||||    
T  19705616 gattttccttca 19705605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 28145442 - 28145331
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgtattaaaaatc 100  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||  |||||||||| | |||| |||||||||||||||| |  |||||    
T  28145442 cttcgaggtaacaatcaaatcactgatttatgtgtaattcgtaatgatccaaggaaagaaaatcgaaattttttgcgctgcttattctgtaatgtaaatc 28145343  T
Q  101 gattttccttca 112  Q
    ||||||||||||    
T  28145342 gattttccttca 28145331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 47666729 - 47666617
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattc-atgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgta--ttaaaa 97  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||  |||||||||||  |||||||||||||||||||||  || |||    
T  47666729 cttcgaggtaacaatcgaatcactgattcaatgtgtagttcgtaatgatccaaggaaagaaaatcgaat--ttttccgctgcttattctgtaatttgaaa 47666632  T
Q  98 atcgattttccttca 112  Q
    |||||||||||||||    
T  47666631 atcgattttccttca 47666617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 35936379 - 35936486
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgtattaaaaatc 100  Q
    |||||| || ||||| |||||||||||||||||||||||||||||||||||||||   |||||||||   || ||||||| ||||||  ||||| ||||     
T  35936379 cttcgaagtcacaattgaatcactgattcatgtgtaattcgtaatgatccaaggaaaaaaaatcgaaaatttatccgctggttattc--tattacaaatt 35936476  T
Q  101 gattttcctt 110  Q
    ||||||||||    
T  35936477 gattttcctt 35936486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 22669496 - 22669411
Alignment:
Q  6 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggattgaaaatcgaa-ttattttccgctgcttattctg 89  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||  | |||||||| || |||||||||||||||||||    
T  22669496 aggtaacaatcgaatcactggttcaagtcttaattcgtaatgatccaaggaaagtaaatcgaattttttttccgctgcttattctg 22669411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 14482954 - 14483040
Alignment:
Q  6 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgt 90  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||  | |||||| |||| | ||||||||||||||||||    
T  14482954 aggtaacaatcgaatcactggttcaagtttcaattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgt 14483040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 33262935 - 33262849
Alignment:
Q  6 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggattgaaaatcgaattatt-ttccgctgcttattctgt 90  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||  | |||||||| | || ||||||||||||||||||    
T  33262935 aggtaacaatcgaatcactggttcaagtttcaattcgtaatgatccaaggaaagtaaatcgaaatgttattccgctgcttattctgt 33262849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 33283094 - 33283008
Alignment:
Q  6 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggattgaaaatcgaattatt-ttccgctgcttattctgt 90  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||  | |||||||| | || ||||||||||||||||||    
T  33283094 aggtaacaatcgaatcactggttcaagtttcaattcgtaatgatccaaggaaagtaaatcgaaatgttattccgctgcttattctgt 33283008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 8728694 - 8728760
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaa 67  Q
    ||||||||||||||| |||| ||||||||||||| ||||| | |||||||||||   ||||||||||    
T  8728694 cttcgaggtaacaattgaattactgattcatgtgaaattcttgatgatccaagggaagaaaatcgaa 8728760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 20390479 - 20390393
Alignment:
Q  6 aggtaacaatcgaatcactgattcatg-tgtaattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgt 90  Q
    |||||||||||||||||||| |||| | |  ||||||||||||||||||||  | |||||| |||| | ||||||||||||||||||    
T  20390479 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgt 20390393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 20778884 - 20778796
Alignment:
Q  6 aggtaacaatcgaatcactgattcatg-tgtaattcgtaatgatccaaggattgaaaatc--gaattattttccgctgcttattctgta 91  Q
    |||||||||||||||||||| |||| | |  ||||||||||||||||||||  | |||||  ||||| | |||||||||||||||||||    
T  20778884 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgagaattttattccgctgcttattctgta 20778796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 8793245 - 8793198
Alignment:
Q  180 cggggttcgaaccc-gatacctccactttgcgtgtgtgagtttatgat 226  Q
    |||||||||||||| | ||||||||||||| |||||||||||||||||    
T  8793245 cggggttcgaaccccggtacctccactttgtgtgtgtgagtttatgat 8793198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 22239963 - 22239877
Alignment:
Q  6 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgt 90  Q
    ||||||| |||||||||||| |||| ||   ||||||||||||||||||||  | |||||| |||| | ||||||||||||||||||    
T  22239963 aggtaacgatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgt 22239877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 7204578 - 7204533
Alignment:
Q  180 cggggttcgaaccc-gatacctccactttgcgtgtgtgagtttatg 224  Q
    |||||||||||||| ||||||||||||||| || ||||||||||||    
T  7204578 cggggttcgaaccccgatacctccactttgtgtatgtgagtttatg 7204533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 7e-40; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 18019063 - 18018953
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgtattaaaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||| |  |||||    
T  18019063 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaatt-ttttccgctgcttattctgtaatgtaaatc 18018965  T
Q  101 gattttccttca 112  Q
    ||||||||||||    
T  18018964 gattttccttca 18018953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 5754266 - 5754155
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgtattaaaaat 99  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||| | |||| || ||||||||||||||||| ||  || |    
T  5754266 cttcgaggtaacaatcggatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaattgaaatttttatccgctgcttattctgt-tttgaatt 5754168  T
Q  100 cgattttccttca 112  Q
    |||||||||||||    
T  5754167 cgattttccttca 5754155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 8613968 - 8614080
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcg--aattattttccgctgcttattctgtattaaaaa 98  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||  ||||||||  |||| || ||||||||||||||||| ||  ||     
T  8613968 cttcgaggtaacaatcggatcacttattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaatttttatccgctgcttattctgt-tttgaat 8614066  T
Q  99 tcgattttccttca 112  Q
    ||||||||||||||    
T  8614067 tcgattttccttca 8614080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 33317920 - 33318032
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcg--aattattttccgctgcttattctgtattaaaaa 98  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||  ||||||||  |||| || ||||||||||||||||| ||  ||     
T  33317920 cttcgaggtaacaatcagatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaatttttatccgctgcttattctgt-tttgaat 33318018  T
Q  99 tcgattttccttca 112  Q
    ||||||||||||||    
T  33318019 tcgattttccttca 33318032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 14075553 - 14075660
Alignment:
Q  5 gaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatc-gaattattttccgctgcttattctgtattaaaaatcgat 103  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||  || | || ||||||||||||||||| ||  || |||||    
T  14075553 gaggtaacaatcgaatcactgattcatttgtaattcgtaatgatccaaggaaagaaaatctaaaattttatccgctgcttattctgt-tttgaattcgat 14075651  T
Q  104 tttccttca 112  Q
    |||||||||    
T  14075652 tttccttca 14075660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 22859126 - 22859044
Alignment:
Q  6 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctg 89  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||  | |||||||||  |||||||||||||||||||    
T  22859126 aggtaacaatcgaatcactggttcaagttttaattcgtaatgatccaaggaaagtaaatcgaat--ttttccgctgcttattctg 22859044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 1585344 - 1585258
Alignment:
Q  6 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgt 90  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||  | |||||| |||| | ||| ||||||||||||||    
T  1585344 aggtaacaatcgaatcactggttcaagtttcaattcgtaatgatccaaggaaagtaaatcgaaattttattctgctgcttattctgt 1585258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 9297821 - 9297862
Alignment:
Q  185 ttcgaacccgatacctccactttgcgtgtgtgagtttatgat 226  Q
    |||||||||| ||||||||||||| |||||||||||||||||    
T  9297821 ttcgaacccggtacctccactttgtgtgtgtgagtttatgat 9297862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 11250622 - 11250709
Alignment:
Q  6 aggtaacaatcgaatcactgattcatg-tgtaattcgtaatgatccaaggattgaaaatcgaa--ttattttccgctgcttattctgt 90  Q
    |||||||||||||||||||| |||| | |  ||||||||||||||||||||  | ||||||||  || | ||||||||||||||||||    
T  11250622 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaatttttattccgctgcttattctgt 11250709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 16790126 - 16790214
Alignment:
Q  6 aggtaacaatcgaatcactgattcatg-tgtaattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgtat 92  Q
    |||||||||||||||||||| |||| | |  ||||||||||||||||||||  | |||||| |||| | ||| ||||||||||||||||    
T  16790126 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaattttattctgctgcttattctgtat 16790214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 27507586 - 27507498
Alignment:
Q  6 aggtaacaatcgaatcactgattcatg-tgtaattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgtat 92  Q
    |||||||||||||||||||| |||| | |  ||||||||||||||||||||  | |||||| |||| |  |||||||||||||||||||    
T  27507586 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaattttaatccgctgcttattctgtat 27507498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 21996844 - 21996909
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaa 67  Q
    ||||||||||||| || | ||||| ||||||||  ||||| |||||||||||||| |||||||||||    
T  21996844 cttcgaggtaacattc-attcactaattcatgtcaaattcataatgatccaaggaatgaaaatcgaa 21996909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 1251 - 1362
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgtatt-aaaaat 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||| ||  |||||    
T  1251 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaatta-tttccgctgcttattctgttttgtaaaat 1349  T
Q  100 cgattttccttca 112  Q
    |||||||||||||    
T  1350 cgattttccttca 1362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 15462574 - 15462684
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgtattaaaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||||||||| |   ||||    
T  15462574 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaaaaaaatcgaaatattttccgctgcttattctgtaat-tgaatc 15462672  T
Q  101 gattttccttca 112  Q
    ||||||||||||    
T  15462673 gattttccttca 15462684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 28917011 - 28916900
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgt-attaaaaat 99  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||| | |||||||||||||||||||| |||| |||     
T  28917011 cttcgaggtaacaatcgaatcactgattcatgtgtagttcgtaatgatccaaggaaagaaaatcgaaat-ttttccgctgcttattctgtaattagaaac 28916913  T
Q  100 cgattttccttca 112  Q
    |||||||||||||    
T  28916912 cgattttccttca 28916900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 34976582 - 34976690
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgtattaaaaatc 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||  ||||| |||||||||||||  ||| |||||    
T  34976582 cttcgagataacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaggaaaatcaaatatttttctgctgcttattctg--ttataaatc 34976679  T
Q  101 gattttccttc 111  Q
    |||||||||||    
T  34976680 gattttccttc 34976690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 11483049 - 11482935
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattc-atgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgt--attaaaa 97  Q
    ||||||||||||||||||||||||||||| || |||| ||||||||||||||||||  |||||||||||  ||||||||||||||||||||   || |||    
T  11483049 cttcgaggtaacaatcgaatcactgattcaatttgtagttcgtaatgatccaaggaaagaaaatcgaat--ttttccgctgcttattctgttatttgaaa 11482952  T
Q  98 atcgattttccttcact 114  Q
    |||||||||||||||||    
T  11482951 atcgattttccttcact 11482935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 4547123 - 4547233
Alignment:
Q  2 ttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaa--ttattttccgctgcttattctgtattaaaaat 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||| |||  || || | ||||||||||||  |||||  | |    
T  4547123 ttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatcaaaggaaagaaaattgaaattttttattcgctgcttattc--tattatgatt 4547220  T
Q  100 cgattttccttca 112  Q
    |||||||||||||    
T  4547221 cgattttccttca 4547233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 15651644 - 15651578
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaa 67  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||  ||||||||||    
T  15651644 cttcgaggtaacaatcggatcactgattcatgtataattcgtaatgatccaaggaaagaaaatcgaa 15651578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 9488595 - 9488649
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaagga 55  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  9488595 cttcgaggtaacaattgaatcactgattcatatgtaattcgtaatgatccaagga 9488649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 38817701 - 38817782
Alignment:
Q  6 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttatt 86  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||  | |||||||||| ||||||||||||||||    
T  38817701 aggtaacaatcgaatcactggttcaagttttaattcgtaatgatccaaggaaagtaaatcgaatttttttccgctgcttatt 38817782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 18164226 - 18164312
Alignment:
Q  6 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgt 90  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||  | |||||| |||| | ||||||||||||||||||    
T  18164226 aggtaacaatcgaatcactggttcaagtttcaattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgt 18164312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 18110281 - 18110193
Alignment:
Q  6 aggtaacaatcgaatcactgattcatg-tgtaattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgtat 92  Q
    |||||||||||||||||||| |||| | |  ||||||||||||||||||||  | |||||| |||| | ||||||||||||||||||||    
T  18110281 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgtat 18110193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 4675188 - 4675102
Alignment:
Q  6 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgt 90  Q
    |||||||||| ||||||||| |||| || | ||||||||||||||||||||  | |||||| |||| | ||||||||||||||||||    
T  4675188 aggtaacaattgaatcactggttcaagtttcaattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgt 4675102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 17299193 - 17299107
Alignment:
Q  6 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggattgaaaatcgaattatt-ttccgctgcttattctgt 90  Q
    |||||||||||||||||||| |||| ||   ||||||||||||||||||||  | |||||||||| || || |||||||||||||||    
T  17299193 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaatttttatttcgctgcttattctgt 17299107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 20245002 - 20245088
Alignment:
Q  6 aggtaacaatcgaatcactgattcatg-tgtaattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgt 90  Q
    |||||||||||||||||||| |||| | |  ||||||||||||||||||||  | |||||| |||| | ||||||||||||||||||    
T  20245002 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgt 20245088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 30039773 - 30039707
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaa 67  Q
    ||||||||||||||||||||||||||||| |||  ||||| |||| ||| |||||  ||||||||||    
T  30039773 cttcgaggtaacaatcgaatcactgattcttgtcaaattcataataatcaaaggaaagaaaatcgaa 30039707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 2678076 - 2678164
Alignment:
Q  6 aggtaacaatcgaatcactgattcatg-tgtaattcgtaatgatccaaggattgaaaatcg--aattattttccgctgcttattctgta 91  Q
    |||||||||||||||||||| |||| | |  ||||||||||||||||||||  | ||||||  |||| | |||||||||||||||||||    
T  2678076 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaaattttattccgctgcttattctgta 2678164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 26532677 - 26532765
Alignment:
Q  6 aggtaacaatcgaatcactgattcatg-tgtaattcgtaatgatccaaggattgaaaatcg--aattattttccgctgcttattctgta 91  Q
    |||||||||||||||||||| |||| | |  ||||||||||||||||||||  | ||||||  |||| | |||||||||||||||||||    
T  26532677 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaaattttattccgctgcttattctgta 26532765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 32057788 - 32057747
Alignment:
Q  185 ttcgaacccgatacctccactttgcgtgtgtgagtttatgat 226  Q
    |||||||||| ||||||||||||| |||||||||||||||||    
T  32057788 ttcgaacccggtacctccactttgtgtgtgtgagtttatgat 32057747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 5871481 - 5871569
Alignment:
Q  6 aggtaacaatcgaatcactgattcatg-tgtaattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgtat 92  Q
    |||||||||||||||||||| |||| | |  ||||||||||||||||||||  | |||||| |||| | ||||||||||| ||||||||    
T  5871481 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttgttctgtat 5871569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 37759488 - 37759534
Alignment:
Q  181 ggggttcgaacc-cgatacctccactttgcgtgtgtgagtttatgat 226  Q
    |||||||||||| |||| ||||||||||| |||||||||||||||||    
T  37759488 ggggttcgaacctcgattcctccactttgtgtgtgtgagtttatgat 37759534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 3084313 - 3084262
Alignment:
Q  179 tcggggttcgaa-cccgatacctccactttgcgtgtgtgagtttatgataact 230  Q
    |||||||||||| |||||||||||||||| | |||||||||||||| ||||||    
T  3084313 tcggggttcgaatcccgatacctccactt-gtgtgtgtgagtttataataact 3084262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 24870658 - 24870702
Alignment:
Q  183 ggttcgaacc-cgatacctccactttgcgtgtgtgagtttatgat 226  Q
    |||||||||| || |||||||||||| ||||||||||||||||||    
T  24870658 ggttcgaacctcggtacctccactttacgtgtgtgagtttatgat 24870702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 38811 - 38702
Alignment:
Q  2 ttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgtattaaaaatcg 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||   ||||||||||||||||||||| |  ||||||    
T  38811 ttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaatttttccgctgcttattctgtaat-gaaatcg 38713  T
Q  102 attttccttca 112  Q
    |||||||||||    
T  38712 attttccttca 38702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 73438 - 73322
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattca-tgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgt-attaaaaa 98  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||  ||||||||| |||||||||| |||  |||    
T  73438 cttcgaggtaacaatcgaatcactgattcaatgtgtagttcgtaatgatccaaggaatgaaaatcgaat--ttttccgctacttattctgtaatttgaaa 73341  T
Q  99 tcgattttccttcactttt 117  Q
    |||||||||||||||||||    
T  73340 tcgattttccttcactttt 73322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 8466059 - 8466169
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgtattaaaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||| ||| | ||||||||||||||||||||| |  |||||    
T  8466059 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgattcaaggaaagaaaattgaaat-ttttccgctgcttattctgtaatgtaaatc 8466157  T
Q  101 gattttccttca 112  Q
    ||||||||||||    
T  8466158 gattttccttca 8466169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 34129635 - 34129747
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattt--tccgctgcttattctgtattaaaaa 98  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||  ||||||||||  ||||  ||||||||||||||||| ||  ||     
T  34129635 cttcgaggtaacaatcagatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgt-tttgaat 34129733  T
Q  99 tcgattttccttca 112  Q
    ||||||||||||||    
T  34129734 tcgattttccttca 34129747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 19231931 - 19232050
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattt--tccgctgcttattctgtattaaaaa 98  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||  ||||||||||  ||||  |||||||||||||||| ||   ||     
T  19231931 cttcgaggtaacaattgaatcagtgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctg-atctgaat 19232029  T
Q  99 tcgattttccttcacttttat 119  Q
    |||||||||||||||| ||||    
T  19232030 tcgattttccttcactgttat 19232050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 18258363 - 18258280
Alignment:
Q  9 taacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattt--tccgctgcttattctgt 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||  ||||  |||||||||||||||||    
T  18258363 taacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgt 18258280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 41680295 - 41680204
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattt--tccgctgcttattctgt 90  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||  ||||||||||  ||||  |||||||||||||||||    
T  41680295 cttcgaggtaagaatcgaatcacggattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgt 41680204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 47166107 - 47166041
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaa 67  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||    
T  47166107 cttcgaggtaacaatcggatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaa 47166041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 28131599 - 28131658
Alignment:
Q  8 gtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaa 67  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||    
T  28131599 gtaacaatcgaatcattgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaa 28131658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 10666304 - 10666192
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaa--ttattttccgctgcttattctgtattaaaaa 98  Q
    |||||||||||||||| ||| | ||||||||||||||||||||||||||||||||  ||||||| ||  || || | ||||||||||||||| ||  ||     
T  10666304 cttcgaggtaacaatcaaataattgattcatgtgtaattcgtaatgatccaaggaaagaaaatcaaaattttttattcgctgcttattctgt-tttgaat 10666206  T
Q  99 tcgattttccttca 112  Q
    ||||||||||||||    
T  10666205 tcgattttccttca 10666192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 42148578 - 42148524
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaagga 55  Q
    |||||||||||||||||||||| |||||| |||  ||||||||||||||||||||    
T  42148578 cttcgaggtaacaatcgaatcattgattcttgtcaaattcgtaatgatccaagga 42148524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 15730817 - 15730903
Alignment:
Q  6 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgt 90  Q
    |||||||||||||||||||| |||| || | ||||||||||||||||||||  | |||||| |||| | ||| ||||||||||||||    
T  15730817 aggtaacaatcgaatcactggttcaagtttcaattcgtaatgatccaaggaaagtaaatcgaaattttattctgctgcttattctgt 15730903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 48807754 - 48807668
Alignment:
Q  6 aggtaacaatcgaatcactgattcatg-tgtaattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgt 90  Q
    |||||||||||||||||||| |||| | |  ||||||||||||||||||||  | |||||| |||| | ||||||||||||||||||    
T  48807754 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgt 48807668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 12188854 - 12188766
Alignment:
Q  6 aggtaacaatcgaatcactgattcatg-tgtaattcgtaatgatccaaggattgaaaatcg--aattattttccgctgcttattctgta 91  Q
    |||||||||||||||||||| |||| | |  ||||||||||||||||||||  | ||||||  |||| | |||||||||||||||||||    
T  12188854 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaaattttattccgctgcttattctgta 12188766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 19860181 - 19860269
Alignment:
Q  6 aggtaacaatcgaatcactgattcatg-tgtaattcgtaatgatccaaggattgaaaatcga--attattttccgctgcttattctgta 91  Q
    |||||||||||||||||||| |||| | |  ||||||||||||||||||||  | |||||||  ||| | |||||||||||||||||||    
T  19860181 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaatattttattccgctgcttattctgta 19860269  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 30255203 - 30255284
Alignment:
Q  6 aggtaacaatcgaatcactgattcatgtgt-aattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttatt 86  Q
    ||||||||||| |||||||| |||| ||   ||||||||||||||||||||  | |||||||||| | ||||||||||||||    
T  30255203 aggtaacaatctaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaattttattccgctgcttatt 30255284  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 19392698 - 19392644
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaagga 55  Q
    ||||||||| |||||| |||||||||||||| |  ||||||||| ||||||||||    
T  19392698 cttcgaggtcacaatcaaatcactgattcatatcaaattcgtaaagatccaagga 19392644  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 6328242 - 6328197
Alignment:
Q  182 gggttcgaaccc-gatacctccactttgcgtgtgtgagtttatgat 226  Q
    |||||||||||| ||||||||||||||  |||||||||||||||||    
T  6328242 gggttcgaaccccgatacctccactttatgtgtgtgagtttatgat 6328197  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 9506909 - 9506865
Alignment:
Q  183 ggttcgaac-ccgatacctccactttgcgtgtgtgagtttatgat 226  Q
    ||||||||| ||| ||||||||||||| |||||||||||||||||    
T  9506909 ggttcgaactccggtacctccactttgtgtgtgtgagtttatgat 9506865  T

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Target: scaffold0069 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 278 - 389
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgt-attaaaaat 99  Q
    ||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||  ||||||||||  ||||| ||||||||||||||| |||| ||||    
T  278 cttcgaggtaacaatcggatcactgattcacgtgtagttcgtaatgatccaaggaaagaaaatcgaa--atttttcgctgcttattctgtaattagaaat 375  T
Q  100 cgattttccttcac 113  Q
    ||||||||||||||    
T  376 cgattttccttcac 389  T

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Target: scaffold0389 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 1227 - 1333
Alignment:
Q  6 aggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgtattaaaaatcgatt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||| ||||||||||||||||||||||||| || |||  || ||    
T  1227 aggtaacaatcgaatcactgattcatgtgtaattcgtaatgatcc-aggaaggaaaatcgaaattattttccgctgcttattctgtttttaaatgcggtt 1325  T
Q  105 ttccttca 112  Q
    ||||||||    
T  1326 ttccttca 1333  T

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Target: scaffold0017 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 128553 - 128663
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgtattaaaaatc 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||| | || | ||||||||||||||| |  ||| ||    
T  128553 cttcgaggtaacaatcgaatcactgattcatgtctaattcgtaatgatccaaggagagaaaatcgaaattttattcgctgcttattctgt-tgtaaactc 128651  T
Q  101 gattttccttca 112  Q
    ||||||||||||    
T  128652 gattttccttca 128663  T

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Target: scaffold0001 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 137937 - 137827
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaattattttccgctgcttattctgtattaaaaatc 100  Q
    ||||||||||||||||||| ||||||||| ||||||||||   ||||||||||||  |||||||||| |||||||||||||||||||| || |  |||||    
T  137937 cttcgaggtaacaatcgaaccactgattcttgtgtaattcaatatgatccaaggaaagaaaatcgaaatattttccgctgcttattctataat-gaaatc 137839  T
Q  101 gattttccttca 112  Q
    ||||||||||||    
T  137838 gattttccttca 137827  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 24228463 - 24228378
Alignment:
Q  6 aggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgt 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| || | || |||||||||||||||||    
T  24228463 aggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaattttatccgctgcttattctgt 24228378  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 19617466 - 19617529
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatc 64  Q
    |||||||||||| ||||||||| ||||||||||  ||||||||||||||||||||  |||||||    
T  19617466 cttcgaggtaacgatcgaatcattgattcatgtcaaattcgtaatgatccaaggaaagaaaatc 19617529  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 24761995 - 24761929
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaa 67  Q
    ||||| |||||||||| ||||||||| ||||||  ||||||||||||||||||||  ||||||||||    
T  24761995 cttcgcggtaacaatcaaatcactgagtcatgtcaaattcgtaatgatccaaggaaagaaaatcgaa 24761929  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 32739259 - 32739194
Alignment:
Q  2 ttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaaggattgaaaatcgaa 67  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||||  |||||  ||||||||||    
T  32739259 ttcgaggtaacaatcgaatcactaattcttgtgtaattcgtgatgatttaaggaaagaaaatcgaa 32739194  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 24249271 - 24249183
Alignment:
Q  6 aggtaacaatcgaatcactgattcatg-tgtaattcgtaatgatccaaggattgaaaatcg--aattattttccgctgcttattctgta 91  Q
    |||||||||||||||||||| |||| | |  ||||||||||||||||||||  | ||||||  |||| | |||||||||||||||||||    
T  24249271 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaaattttattccgctgcttattctgta 24249183  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 22999133 - 22999180
Alignment:
Q  180 cggggttcgaaccc-gatacctccactttgcgtgtgtgagtttatgat 226  Q
    |||||||||||||| || |||||||||||| |||||||||||||||||    
T  22999133 cggggttcgaaccccgacacctccactttgtgtgtgtgagtttatgat 22999180  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 13491084 - 13491129
Alignment:
Q  180 cggggttcgaacc-cgatacctccactttgcgtgtgtgagtttatg 224  Q
    ||||||||||||| | |||||||||||||| |||||||||||||||    
T  13491084 cggggttcgaacctcaatacctccactttgtgtgtgtgagtttatg 13491129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 22382404 - 22382356
Alignment:
Q  179 tcggggttcgaaccc-gatacctccactttgcgtgtgtgagtttatgat 226  Q
    ||||||||||||||| || |||||||||||| || ||||||||||||||    
T  22382404 tcggggttcgaaccccgacacctccactttgtgtatgtgagtttatgat 22382356  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 22914430 - 22914382
Alignment:
Q  179 tcggggttcgaaccc-gatacctccactttgcgtgtgtgagtttatgat 226  Q
    ||||||||||||||| || |||||||||||| || ||||||||||||||    
T  22914430 tcggggttcgaaccccgacacctccactttgtgtatgtgagtttatgat 22914382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 32517885 - 32517841
Alignment:
Q  183 ggttcgaaccc-gatacctccactttgcgtgtgtgagtttatgat 226  Q
    ||||||||||| | ||||||||||||| |||||||||||||||||    
T  32517885 ggttcgaaccccggtacctccactttgtgtgtgtgagtttatgat 32517841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 36685474 - 36685423
Alignment:
Q  179 tcggggttcgaaccc-gatacctccactttgcgtgtgtgagtttatgataact 230  Q
    ||||||||||||||| ||||||||||||| | |||||||||||||| ||||||    
T  36685474 tcggggttcgaaccctgatacctccactt-gtgtgtgtgagtttataataact 36685423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 10147 - 10096
Alignment:
Q  1 cttcgaggtaacaatcgaatcactgattcatgtgtaattcgtaatgatccaa 52  Q
    ||||||||||||||||||||||||||||| |||  |||||||||||||||||    
T  10147 cttcgaggtaacaatcgaatcactgattcttgtcaaattcgtaatgatccaa 10096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 22139 - 22187
Alignment:
Q  179 tcggggttcgaaccc-gatacctccactttgcgtgtgtgagtttatgat 226  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  22139 tcggggttcgaaccccgatacctccactttgtgtgtgtgagtttatgat 22187  T

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Target: scaffold0193 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 32391 - 32305
Alignment:
Q  6 aggtaacaatcgaatcactgattcatg-tgtaattcgtaatgatccaaggattgaaaatcg-aattattttccgctgcttattctgt 90  Q
    |||||||||||||||||||| |||| | |  ||||||||||||||||||||  | |||||| |||| | ||||||||||||||||||    
T  32391 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgt 32305  T

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Target: scaffold1849 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1849
Description:

Target: scaffold1849; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 176 - 264
Alignment:
Q  6 aggtaacaatcgaatcactgattcatg-tgtaattcgtaatgatccaaggattgaaaatcg--aattattttccgctgcttattctgta 91  Q
    |||||||||||||||||||| |||| | |  ||||||||||||||||||||  | ||||||  |||| | |||||||||||||||||||    
T  176 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaaattttattccgctgcttattctgta 264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 2915 - 2826
Alignment:
Q  6 aggtaacaatcgaatcactgattcatg-tgtaattcgtaatgatccaaggattgaaaatcg--aattattttccgctgcttattctgtat 92  Q
    |||||||||||||||||||| |||| | |  ||||||||||||||||||||  | ||||||  |||| | ||| ||||||||||||||||    
T  2915 aggtaacaatcgaatcactggttcaagttccaattcgtaatgatccaaggaaagtaaatcgaaaattttattctgctgcttattctgtat 2826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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