View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_low_118 (Length: 323)

Name: NF1137_low_118
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_low_118
NF1137_low_118
[»] chr4 (7 HSPs)
chr4 (1-313)||(18727833-18728146)
chr4 (1-310)||(18720400-18720710)
chr4 (1-313)||(18651814-18652122)
chr4 (1-313)||(18675867-18676180)
chr4 (1-217)||(18686004-18686220)
chr4 (22-217)||(18693531-18693729)
chr4 (20-106)||(18076774-18076860)
[»] chr6 (19 HSPs)
chr6 (1-209)||(27657104-27657310)
chr6 (6-125)||(27607613-27607732)
chr6 (1-124)||(28782735-28782855)
chr6 (4-170)||(28789941-28790096)
chr6 (1-79)||(26659547-26659625)
chr6 (1-79)||(26765518-26765596)
chr6 (5-124)||(26638998-26639116)
chr6 (5-124)||(26744964-26745082)
chr6 (1-70)||(27600863-27600932)
chr6 (27-143)||(26953282-26953394)
chr6 (14-76)||(26659623-26659685)
chr6 (14-76)||(26765594-26765656)
chr6 (20-106)||(27424695-27424781)
chr6 (18-112)||(26650148-26650238)
chr6 (18-112)||(26756116-26756206)
chr6 (234-312)||(27656978-27657063)
chr6 (27-125)||(26626820-26626914)
chr6 (27-125)||(26732797-26732891)
chr6 (1-73)||(27600677-27600752)
[»] scaffold0419 (1 HSPs)
scaffold0419 (4-124)||(11085-11202)
[»] scaffold0277 (2 HSPs)
scaffold0277 (1-170)||(970-1130)
scaffold0277 (4-170)||(10103-10258)
[»] scaffold0003 (1 HSPs)
scaffold0003 (20-106)||(62582-62668)
[»] chr1 (1 HSPs)
chr1 (27-87)||(26139691-26139751)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 18728146 - 18727833
Alignment:
Q  1 tttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  18728146 tttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaaaagaaaaggaacaccatggatagatatattccttggtc 18728047  T
Q  101 caggtacatcattatcatcattatctttataaatcaattaattgtttctacctggaagagtttttcaaataacgagacatgatataagattctgtcgaaa 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  18728046 caggtacatcattatcattattatctttataaatcaattaattgtttctacctggaagagtttttcaaatgacgagacatgatataagattctgtccaaa 18727947  T
Q  201 atgctttgtagacacacacttcttatctaaggcatccaataccgacacatgtgattttcgcaaattactattggtgttgac-aatcaatgtcgagtccgg 299  Q
    ||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||| ||||||||||||||  ||    
T  18727946 atgctttgtagacacacacttctgatcgaaggcatccaataccaacacaggtgattttctcaaattactattggtgttgacaaatcaatgtcgagtttgg 18727847  T
Q  300 tgtccgtgtctgtg 313  Q
    ||||||||||||||    
T  18727846 tgtccgtgtctgtg 18727833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 18720710 - 18720400
Alignment:
Q  1 tttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtc 100  Q
    |||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18720710 tttgcagcagcaacatctagttttattgccaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtc 18720611  T
Q  101 caggtacatcattatcatcattatctttataaatcaattaattgtttctacctggaagagtttttcaaataacgagacatgatataagattctgtcgaaa 200  Q
    |||||||||||||||||| |||||||| |||||||||||||||| |||||||| |||||||||||||||| | ||||||||||||||||||||||||| |    
T  18720610 caggtacatcattatcattattatcttaataaatcaattaattgcttctacctagaagagtttttcaaatgatgagacatgatataagattctgtcgata 18720511  T
Q  201 atgctttgtagacacacacttcttatctaaggcatccaataccgacacatgtgattttcgcaaattactattggtgttgac-aatcaatgtcgagtccgg 299  Q
    ||||||||||||||||||||||  ||| ||||||||||||||||||| ||||||||||| |||||||| ||| |||||||| ||||| ||||||||| ||    
T  18720510 atgctttgtagacacacacttcagatcgaaggcatccaataccgacatatgtgattttctcaaattaccattagtgttgacaaatcagtgtcgagtctgg 18720411  T
Q  300 tgtccgtgtct 310  Q
    |||||||||||    
T  18720410 tgtccgtgtct 18720400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 18652122 - 18651814
Alignment:
Q  1 tttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18652122 tttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtc 18652023  T
Q  101 caggtacatcattatcatcattatctttataaatcaattaattgtttctacctggaagagtttttcaaataacgagacatgatataagattctgtcgaaa 200  Q
    ||||||||||||| |||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||| | |||||||||| ||||||||||||||||    
T  18652022 caggtacatcattgtcattattatctttataaaccaattaattgtctctacctgaaagagtttttcaaatgatgagacatgatttaagattctgtcgaaa 18651923  T
Q  201 atgctttgtagacacacacttcttatctaaggcatccaataccgacacatgtgattttcgcaaattactattggtgttgac-aatcaatgtcgagtccgg 299  Q
    ||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||     |  |||||||||||||| ||||| ||||||||| ||    
T  18651922 atgctttgtagacacacacttctgatccagggcatccaataccgacacatgtgattttc-----tcgctattggtgttgacaaatcagtgtcgagtctgg 18651828  T
Q  300 tgtccgtgtctgtg 313  Q
    ||||||||||||||    
T  18651827 tgtccgtgtctgtg 18651814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 18676180 - 18675867
Alignment:
Q  1 tttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtc 100  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18676180 tttgcagcagcaacatctagttttattgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatatttcttggtc 18676081  T
Q  101 caggtacatcattatcatcattatctttataaatcaattaattgtttctacctggaagagtttttcaaataacgagacatgatataagattctgtcgaaa 200  Q
    |||||||||||||||||| |||||||| |||| ||||||||||| |||||||| |||||||||||||||| | ||||||||||||||||||||||||| |    
T  18676080 caggtacatcattatcattattatcttaataactcaattaattgcttctacctagaagagtttttcaaatgatgagacatgatataagattctgtcgata 18675981  T
Q  201 atgctttgtagacacacacttcttatctaaggcatccaataccgacacatgtgattttcgcaaattactattggtgttgac-aatcaatgtcgagtccgg 299  Q
    ||||||||||||||||||||||  ||| ||||||||||||||||||| ||||||||||| |||||||| ||| |||||||| ||||| ||||||||| ||    
T  18675980 atgctttgtagacacacacttcagatcgaaggcatccaataccgacatatgtgattttctcaaattaccattagtgttgacaaatcagtgtcgagtctgg 18675881  T
Q  300 tgtccgtgtctgtg 313  Q
    ||||||||||||||    
T  18675880 tgtccgtgtctgtg 18675867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 18686220 - 18686004
Alignment:
Q  1 tttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||    
T  18686220 tttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttaatgaaacaatagaaaaggaacaccatggatagatatattccttgatc 18686121  T
Q  101 caggtacatcattatcatcattatctttataaatcaattaattgtttctacctggaagagtttttcaaataacgagacatgatataagattctgtcgaaa 200  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18686120 caggtacatcattatcattattatctttataaaccaattaattgtttctatctggaagagtttttcaaatgacgagacatgatataagattctgtcgaaa 18686021  T
Q  201 atgctttgtagacacac 217  Q
    |||||||||||||||||    
T  18686020 atgctttgtagacacac 18686004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 18693729 - 18693531
Alignment:
Q  22 tttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtccaggtacatcattatcatcat 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18693729 tttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtccaggtacatcattatcattat 18693630  T
Q  122 t---atctttataaatcaattaattgtttctacctggaagagtttttcaaataacgagacatgatataagattctgtcgaaaatgctttgtagacacac 217  Q
    |   ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18693629 tatcatctttataaaccaattaattgtttctacctggaagagtttttcaaatgacgagacatgatataagattctgtcgaaaatgctttgtagacacac 18693531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 18076774 - 18076860
Alignment:
Q  20 gctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtccaggta 106  Q
    |||||||||||||||||||  ||||| |||||||||||||||| |||||||||||||| | | |||||| ||||| ||||| |||||    
T  18076774 gctttagtgtcaggcatgccaaacttcgtgcttactgaaacaaaagaaaaggaacaccgttgatagatagattccatggtcaaggta 18076860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 27657310 - 27657104
Alignment:
Q  1 tttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtc 100  Q
    ||||||||| |||||||||||||||||||||| ||||| ||||||||| |||| ||||||||  ||| |||||||||||||||||||| |||||||||||    
T  27657310 tttgcagcaacaacatctagctttagtgtcagtcatgcagaacttggttcttaatgaaacaa--gaataggaacaccatggctagatagattccttggtc 27657213  T
Q  101 caggtacatcattatcatcattatctttataaatcaattaattgtttctacctggaagagtttttcaaataacgagacatgatataagattctgtcgaaa 200  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||| ||||| |||||| | ||||||| || |||||| |||| ||      
T  27657212 caggtacatcattatcattattatctttataaatcaattaattatttctaccttgaatagtttatcaaatgatgagacattatgtaagatactgtggagg 27657113  T
Q  201 atgctttgt 209  Q
    |||||||||    
T  27657112 atgctttgt 27657104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 27607732 - 27607613
Alignment:
Q  6 agcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtccaggt 105  Q
    |||| |||||||||||||||||||||| ||||||||||||||| |||| |||||||| ||||  ||||||||||||||||||  |||||||| |||||||    
T  27607732 agcaacaacatctagctttagtgtcagccatgcggaacttggttcttaatgaaacaaaagaattggaacaccatggctagattgattccttgctccaggt 27607633  T
Q  106 acatcattatcatcattatc 125  Q
    ||||||||||||| ||||||    
T  27607632 acatcattatcattattatc 27607613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 28782735 - 28782855
Alignment:
Q  1 tttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtc 100  Q
    ||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||   |  ||||||| | | |||||||| ||||||| |||    
T  28782735 tttgcagcaacaacatctagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaa---atgaggaacatctttgctagatagattcctttgtc 28782831  T
Q  101 caggtacatcattatcatcattat 124  Q
    |||||||||||||||||| |||||    
T  28782832 caggtacatcattatcattattat 28782855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 28789941 - 28790096
Alignment:
Q  4 gcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtccag 103  Q
    |||||||||||||||| |||||| |||||||||||  |||||||| |||||||||||||   || |||  |||||| |||||||| ||||||| ||||||    
T  28789941 gcagcagcaacatctatctttagagtcaggcatgcaaaacttggttcttactgaaacaa---aagagg--caccattgctagatagattccttcgtccag 28790035  T
Q  104 gtacatcattatcatcattatctttataaatcaattaattgtttctacctggaagagtttttcaaat 170  Q
    ||||||||||||||| |      |||||||  ||||||||||||||||||| |  ||||||||||||    
T  28790036 gtacatcattatcatta------ttataaactaattaattgtttctacctgcataagtttttcaaat 28790096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 26659547 - 26659625
Alignment:
Q  1 tttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccat 79  Q
    ||||||||| ||  |||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  26659547 tttgcagcaacagtatctagctttagtgtcagacatgcagaacttggtgcttactgaaacaaaagaaaaggaacaccat 26659625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 26765518 - 26765596
Alignment:
Q  1 tttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccat 79  Q
    ||||||||| ||  |||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  26765518 tttgcagcaacagtatctagctttagtgtcagacatgcagaacttggtgcttactgaaacaaaagaaaaggaacaccat 26765596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 26638998 - 26639116
Alignment:
Q  5 cagcagcaacatctag---ctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtcc 101  Q
    ||||||||||||||||   ||||| ||||||||||||||||| ||||||| |||||||||| | ||||| ||||||| |||    || ||||||||||||    
T  26638998 cagcagcaacatctagaagctttactgtcaggcatgcggaacatggtgctaactgaaacaaaataaaagtaacaccaaggc----taaattccttggtcc 26639093  T
Q  102 aggtacatcattatcatcattat 124  Q
    |||||||| |||||||| |||||    
T  26639094 aggtacattattatcataattat 26639116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 26744964 - 26745082
Alignment:
Q  5 cagcagcaacatctag---ctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtcc 101  Q
    ||||||||||||||||   ||||| ||||||||||||||||| ||||||| |||||||||| | ||||| ||||||| |||    || ||||||||||||    
T  26744964 cagcagcaacatctagaagctttactgtcaggcatgcggaacatggtgctaactgaaacaaaataaaagtaacaccaaggc----taaattccttggtcc 26745059  T
Q  102 aggtacatcattatcatcattat 124  Q
    |||||||| |||||||| |||||    
T  26745060 aggtacattattatcataattat 26745082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 27600932 - 27600863
Alignment:
Q  1 tttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaag 70  Q
    ||||||||||||  |||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||    
T  27600932 tttgcagcagcagtatctagctgtagtgtccggcatgcggaacttggtgcttactgaaacaaaagaaaag 27600863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 26953282 - 26953394
Alignment:
Q  27 tgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtccaggtacatcattatcatcattatct 126  Q
    ||||||||||| |||  ||| ||||||||||||||| ||||||||||||| ||| ||||    ||||||| ||| | ||||||||||||||| |||| ||    
T  26953282 tgtcaggcatgtggagtttgatgcttactgaaacaaaagaaaaggaacacaatgactag----attccttagtcaaagtacatcattatcattattaact 26953377  T
Q  127 ttataaatcaattaatt 143  Q
    ||||||| |||||||||    
T  26953378 ttataaaccaattaatt 26953394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 26659623 - 26659685
Alignment:
Q  14 catctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacac 76  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||| |||||||||||||    
T  26659623 catctagctttagtgtcaggcatgcacaacttggtgcttattgaaacaaaagaaaaggaacac 26659685  T

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Target: chr6; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 26765594 - 26765656
Alignment:
Q  14 catctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacac 76  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||| |||||||||||||    
T  26765594 catctagctttagtgtcaggcatgcacaacttggtgcttattgaaacaaaagaaaaggaacac 26765656  T

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Target: chr6; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 27424781 - 27424695
Alignment:
Q  20 gctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtccaggta 106  Q
    |||||||||||||||||||  ||||| |||||||||||||||| |||||||||||||| | | |||||| ||||| ||||| |||||    
T  27424781 gctttagtgtcaggcatgccaaacttcgtgcttactgaaacaaaagaaaaggaacaccgttgatagatagattccatggtcaaggta 27424695  T

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Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 26650148 - 26650238
Alignment:
Q  18 tagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtccaggtacatcat 112  Q
    ||||||||||||||| ||||||| | ||||| || |||||||||| | |||||||||| |||||||||     |||||||||| |||||||||||    
T  26650148 tagctttagtgtcagacatgcgggatttggtcctcactgaaacaaaacaaaaggaacatcatggctag----tttccttggtcaaggtacatcat 26650238  T

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Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 26756116 - 26756206
Alignment:
Q  18 tagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtccaggtacatcat 112  Q
    ||||||||||||||| ||||||| | ||||| || |||||||||| | |||||||||| |||||||||     |||||||||| |||||||||||    
T  26756116 tagctttagtgtcagacatgcgggatttggtcctcactgaaacaaaacaaaaggaacatcatggctag----tttccttggtcaaggtacatcat 26756206  T

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Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 27657063 - 27656978
Alignment:
Q  234 atccaataccgacacatgtgattttcgcaaattactattggtgttgac-aatcaa------tgtcgagtccggtgtccgtgtctgt 312  Q
    ||||||||| ||||||| ||||||||  |||||||||||||||||||| ||||||      ||||||||||||| |||||||||||    
T  27657063 atccaatactgacacatctgattttcttaaattactattggtgttgacaaatcaatgtaagtgtcgagtccggtatccgtgtctgt 27656978  T

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Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 26626820 - 26626914
Alignment:
Q  27 tgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtccaggtacatcattatcatcattatc 125  Q
    ||||||||||| |||| |||||||| | |||||||| |||||||||||| |||| || |    ||||||| ||| ||||||||||||||| | ||||||    
T  26626820 tgtcaggcatgtggaatttggtgctgaatgaaacaaaagaaaaggaacaacatgactgg----attccttagtcaaggtacatcattatcgttattatc 26626914  T

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Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 26732797 - 26732891
Alignment:
Q  27 tgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtccaggtacatcattatcatcattatc 125  Q
    ||||||||||| |||| |||||||| | |||||||| |||||||||||| |||| || |    ||||||| ||| ||||||||||||||| | ||||||    
T  26732797 tgtcaggcatgtggaatttggtgctgaatgaaacaaaagaaaaggaacaacatgactgg----attccttagtcaaggtacatcattatcgttattatc 26732891  T

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Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 27600752 - 27600677
Alignment:
Q  1 tttgcagcagcaacatctagctttagtg---tcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaa 73  Q
    ||||||||||||| ||||||||||| ||   |||||||||| |||| |||||||||| || | || ||||||||||    
T  27600752 tttgcagcagcaagatctagctttattgtcatcaggcatgcagaacatggtgcttacagacaaaaaagaaaaggaa 27600677  T

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Target: scaffold0419 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 11085 - 11202
Alignment:
Q  4 gcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtccag 103  Q
    |||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||   || ||||||||||| |||||||| ||||||| ||||||    
T  11085 gcagcagcaatatctagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaa---aagaggaacaccattgctagatagattccttcgtccag 11181  T
Q  104 gtacatcattatcatcattat 124  Q
    ||||||||||||||| |||||    
T  11182 gtacatcattatcattattat 11202  T

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Target: scaffold0277 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 1130 - 970
Alignment:
Q  1 tttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtc 100  Q
    ||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||   |  ||||||| | | |||||||| ||||||| |||    
T  1130 tttgcagcaacaacatctagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaa---atgaggaacatctttgctagatagattccttcgtc 1034  T
Q  101 caggtacatcattatcatcattatctttataaatcaattaattgtttctacctggaagagtttttcaaat 170  Q
    |||||||||||||||||| |      |||||||  ||||||||||||||||||| |  ||||||||||||    
T  1033 caggtacatcattatcatta------ttataaactaattaattgtttctacctgcataagtttttcaaat 970  T

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Target: scaffold0277; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 10258 - 10103
Alignment:
Q  4 gcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtccag 103  Q
    |||||||||||||||| |||||| |||||||||||  |||||||| |||||||||||||   || |||  |||||| |||||||| ||||||| ||||||    
T  10258 gcagcagcaacatctatctttagagtcaggcatgcaaaacttggttcttactgaaacaa---aagagg--caccattgctagatagattccttcgtccag 10164  T
Q  104 gtacatcattatcatcattatctttataaatcaattaattgtttctacctggaagagtttttcaaat 170  Q
    ||||||||||||||| |      |||||||  ||||||||||||||||||| |  ||||||||||||    
T  10163 gtacatcattatcatta------ttataaactaattaattgtttctacctgcataagtttttcaaat 10103  T

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Target: scaffold0003 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 62582 - 62668
Alignment:
Q  20 gctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtccaggta 106  Q
    |||||||||||||||||||  ||||| |||||||||||||||| |||||||||||||| | | |||||| ||||| ||||| |||||    
T  62582 gctttagtgtcaggcatgccaaacttcgtgcttactgaaacaaaagaaaaggaacaccgttgatagatagattccatggtcaaggta 62668  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 26139691 - 26139751
Alignment:
Q  27 tgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagat 87  Q
    ||||| ||||| ||||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  26139691 tgtcacgcatgtggaacttggtgcttaatgaaacaaaagaaaaggaacaccaaggctagat 26139751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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